Wall clock time and date at job start Mon Mar 30 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.33084 * 2 1 4 4 C 1.54799 * 110.31172 * 237.59110 * 2 1 3 5 5 C 1.54507 * 103.91036 * 217.11945 * 4 2 1 6 6 H 1.09003 * 110.50928 * 118.81679 * 5 4 2 7 7 N 1.46506 * 110.50985 * 241.38480 * 5 4 2 8 8 C 1.39675 * 119.99827 * 202.82324 * 7 5 4 9 9 C 1.38909 * 120.07843 * 359.72442 * 8 7 5 10 10 C 1.38098 * 119.92379 * 179.77115 * 9 8 7 11 11 C 1.38282 * 120.07766 * 0.50681 * 10 9 8 12 12 C 1.50702 * 119.92750 * 179.76773 * 11 10 9 13 13 C 1.50701 * 109.46956 * 269.97869 * 12 11 10 14 14 H 1.07993 * 120.00517 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99563 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00244 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99862 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46942 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47102 * 120.00075 * 17 15 13 20 20 H 1.48493 * 109.47259 * 240.00190 * 17 15 13 21 21 C 1.38290 * 120.14765 * 359.74672 * 11 10 9 22 22 C 1.38100 * 120.07606 * 0.02562 * 21 11 10 23 23 C 1.54477 * 104.18979 * 0.10093 * 5 4 2 24 24 O 1.44431 * 104.80191 * 23.90897 * 23 5 4 25 25 H 1.09002 * 109.47353 * 299.20684 * 1 2 3 26 26 H 1.08999 * 109.47213 * 59.20853 * 1 2 3 27 27 H 1.09006 * 109.47136 * 179.20718 * 1 2 3 28 28 H 1.08997 * 110.55508 * 98.53733 * 4 2 1 29 29 H 1.08995 * 110.60777 * 335.72754 * 4 2 1 30 30 H 0.97005 * 119.99811 * 23.10049 * 7 5 4 31 31 H 1.08002 * 120.03229 * 0.02562 * 9 8 7 32 32 H 1.08001 * 119.96359 * 180.25108 * 10 9 8 33 33 H 1.08998 * 109.46885 * 29.98083 * 12 11 10 34 34 H 1.09000 * 109.46771 * 149.97828 * 12 11 10 35 35 H 0.97002 * 119.99925 * 179.97438 * 16 15 13 36 36 H 1.08004 * 119.96085 * 179.97438 * 21 11 10 37 37 H 1.07996 * 120.04178 * 179.97438 * 22 21 11 38 38 H 1.09001 * 110.37373 * 142.73796 * 23 5 4 39 39 H 1.08998 * 110.37491 * 264.97278 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0673 -0.7781 -1.2256 5 6 3.3177 -1.5064 -0.6842 6 1 3.1979 -2.5864 -0.7703 7 7 4.5182 -1.0658 -1.3991 8 6 5.6496 -1.8840 -1.4346 9 6 5.6404 -3.1133 -0.7878 10 6 6.7592 -3.9218 -0.8290 11 6 7.8914 -3.5044 -1.5042 12 6 9.1122 -4.3872 -1.5426 13 6 10.0009 -4.0667 -0.3684 14 1 9.7110 -3.3002 0.3349 15 6 11.1842 -4.7521 -0.1922 16 7 11.5376 -5.6852 -1.0490 17 14 12.2862 -4.3544 1.2628 18 1 11.6672 -3.2736 2.0716 19 1 12.4533 -5.5672 2.1033 20 1 13.6136 -3.9066 0.7706 21 6 7.9059 -2.2789 -2.1448 22 6 6.7889 -1.4674 -2.1116 23 6 3.3873 -1.0863 0.8008 24 8 2.0327 -0.7224 1.1452 25 1 -0.3634 0.5015 0.8970 26 1 -0.3633 0.5261 -0.8828 27 1 -0.3634 -1.0276 -0.0142 28 1 2.3422 -0.0902 -2.0251 29 1 1.3283 -1.4980 -1.5771 30 1 4.5286 -0.2040 -1.8444 31 1 4.7577 -3.4381 -0.2569 32 1 6.7513 -4.8795 -0.3298 33 1 8.8066 -5.4322 -1.4924 34 1 9.6580 -4.2123 -2.4697 35 1 12.3702 -6.1672 -0.9252 36 1 8.7920 -1.9557 -2.6709 37 1 6.8009 -0.5103 -2.6117 38 1 3.7241 -1.9208 1.4158 39 1 4.0539 -0.2326 0.9228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903294349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:25 Heat of formation + Delta-G solvation = -48.834796 kcal Electronic energy + Delta-G solvation = -18809.397156 eV Core-core repulsion = 15908.343371 eV Total energy + Delta-G solvation = -2901.053785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.95487 -39.87728 -36.71245 -35.02574 -33.15660 -32.48836 -31.65353 -30.35062 -27.69940 -26.93038 -24.81630 -23.89367 -22.60425 -21.88125 -21.29343 -18.54599 -18.39946 -17.55225 -16.78007 -16.56437 -16.42970 -16.08516 -15.68192 -15.07678 -14.73256 -14.56347 -14.16621 -14.14002 -13.88954 -13.53796 -13.20379 -13.15119 -13.03631 -12.80409 -12.57362 -12.51099 -12.40092 -12.07149 -11.77104 -11.59000 -11.52683 -11.34083 -10.85914 -10.58836 -10.53535 -9.69138 -8.32058 -7.98466 -6.30420 0.66529 0.86594 1.39611 1.39888 1.53781 2.40954 2.41675 3.04015 3.12477 3.14068 3.54249 3.73665 3.95522 4.08213 4.18057 4.22664 4.25370 4.44720 4.50792 4.64390 4.67236 4.73740 4.77981 4.83829 4.85657 4.99248 5.07016 5.12043 5.19892 5.29068 5.36773 5.39850 5.54346 5.69939 5.80058 5.83724 6.03231 6.23099 6.24505 6.54807 6.83377 6.93127 7.38039 8.91858 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038028 B = 0.003549 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.128882 B = 7888.570098 C = 8233.651628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.075 0.925 4 C -0.147 4.147 5 C 0.123 3.877 6 H 0.089 0.911 7 N -0.731 5.731 8 C 0.196 3.804 9 C -0.193 4.193 10 C -0.091 4.091 11 C -0.121 4.121 12 C 0.062 3.938 13 C -0.524 4.524 14 H 0.052 0.948 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.090 4.090 22 C -0.186 4.186 23 C 0.029 3.971 24 O -0.393 6.393 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.408 0.592 31 H 0.133 0.867 32 H 0.108 0.892 33 H -0.003 1.003 34 H -0.002 1.002 35 H 0.265 0.735 36 H 0.111 0.889 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.580 13.014 -0.636 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.005 3.995 3 H 0.093 0.907 4 C -0.185 4.185 5 C 0.016 3.984 6 H 0.107 0.893 7 N -0.365 5.365 8 C 0.095 3.905 9 C -0.215 4.215 10 C -0.109 4.109 11 C -0.122 4.122 12 C 0.025 3.975 13 C -0.563 4.563 14 H 0.071 0.929 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.109 4.109 22 C -0.208 4.208 23 C -0.050 4.050 24 O -0.312 6.312 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.245 0.755 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.015 0.985 34 H 0.017 0.983 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.159 0.841 38 H 0.107 0.893 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.731 12.764 -0.377 25.206 hybrid contribution 1.325 -0.051 0.345 1.370 sum -20.407 12.713 -0.031 24.043 Atomic orbital electron populations 1.21831 0.91936 1.03131 1.03329 1.23255 0.96386 0.95542 0.84326 0.90709 1.23287 0.96196 1.00453 0.98610 1.22209 0.85107 1.00265 0.90782 0.89301 1.44461 1.10509 1.21100 1.60383 1.17665 0.87527 0.90673 0.94676 1.20690 0.99214 0.95136 1.06500 1.20834 0.92683 0.99476 0.97957 1.20150 0.95772 0.96824 0.99483 1.17994 0.90716 0.93049 0.95707 1.21480 1.04889 1.19756 1.10127 0.92931 1.25953 0.99391 0.94832 0.99469 1.70097 1.24156 1.24965 1.38080 0.85397 0.78383 0.78323 0.78947 1.18997 1.20182 1.20111 1.20850 0.97889 0.93510 0.98620 1.20671 0.92551 1.01673 1.05934 1.23985 0.84170 1.00409 0.96398 1.89150 1.27324 1.75095 1.39618 0.92155 0.89067 0.91969 0.88178 0.88621 0.75549 0.84936 0.87341 0.98460 0.98343 0.92658 0.87052 0.84084 0.89346 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.53 71.98 0.69 -0.91 16 2 C 0.06 0.89 3.93 31.21 0.12 1.02 16 3 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.15 -1.85 6.41 31.72 0.20 -1.65 16 5 C 0.12 2.21 3.11 46.00 0.14 2.35 16 6 H 0.09 1.72 6.53 -2.39 -0.02 1.71 16 7 N -0.73 -14.70 5.28 -314.15 -1.66 -16.36 16 8 C 0.20 5.62 6.65 38.22 0.25 5.88 16 9 C -0.19 -6.23 9.22 22.40 0.21 -6.02 16 10 C -0.09 -3.66 9.69 22.25 0.22 -3.45 16 11 C -0.12 -5.51 5.07 -19.84 -0.10 -5.62 16 12 C 0.06 3.47 5.10 29.10 0.15 3.62 16 13 C -0.52 -30.95 9.09 25.60 0.23 -30.71 16 14 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 15 C 0.00 0.06 5.46 84.65 0.46 0.53 16 16 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 17 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 C -0.09 -3.57 9.69 22.25 0.22 -3.35 16 22 C -0.19 -5.79 9.90 22.40 0.22 -5.57 16 23 C 0.03 0.59 7.35 72.48 0.53 1.13 16 24 O -0.39 -8.39 11.34 -148.98 -1.69 -10.08 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 28 H 0.10 0.94 7.68 -2.39 -0.02 0.92 16 29 H 0.10 1.06 7.87 -2.39 -0.02 1.04 16 30 H 0.41 6.37 8.36 -92.70 -0.77 5.59 16 31 H 0.13 3.59 6.26 -2.91 -0.02 3.57 16 32 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 34 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 Total: -1.00 -68.63 322.80 2.76 -65.87 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.26 Total: 13.23 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 3.54 Total: -42.76 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.37 Total: -73.64 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.69 Total: -10.08 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.63 2.76 -65.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.035 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds