Wall clock time and date at job start Mon Mar 30 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.33149 * 2 1 4 4 C 1.54485 * 110.36992 * 122.24525 * 2 1 3 5 5 C 1.54509 * 104.05889 * 142.81219 * 4 2 1 6 6 H 1.09002 * 110.50994 * 241.21945 * 5 4 2 7 7 N 1.46500 * 110.51340 * 118.64557 * 5 4 2 8 8 C 1.39676 * 120.00062 * 156.89770 * 7 5 4 9 9 C 1.38906 * 120.07171 * 179.97438 * 8 7 5 10 10 C 1.38111 * 119.92343 * 179.97438 * 9 8 7 11 11 C 1.38288 * 120.07382 * 0.28047 * 10 9 8 12 12 C 1.50698 * 119.92407 * 179.69843 * 11 10 9 13 13 C 1.50695 * 109.47077 * 90.00107 * 12 11 10 14 14 H 1.08001 * 119.99903 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00403 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00151 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99599 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46983 * 90.00251 * 17 15 13 19 19 H 1.48500 * 109.46872 * 210.00176 * 17 15 13 20 20 H 1.48505 * 109.46970 * 330.00218 * 17 15 13 21 21 C 1.38286 * 120.14755 * 359.44532 * 11 10 9 22 22 C 1.38112 * 120.07587 * 0.55318 * 21 11 10 23 23 C 1.54485 * 104.18751 * 359.92729 * 5 4 2 24 24 O 1.44422 * 110.37282 * 237.62884 * 2 1 3 25 25 H 1.09004 * 109.47551 * 297.75506 * 1 2 3 26 26 H 1.08999 * 109.47089 * 57.75282 * 1 2 3 27 27 H 1.09002 * 109.47184 * 177.74997 * 1 2 3 28 28 H 1.08998 * 110.50912 * 24.16996 * 4 2 1 29 29 H 1.08999 * 110.51234 * 261.45399 * 4 2 1 30 30 H 0.96994 * 119.99675 * 336.90198 * 7 5 4 31 31 H 1.07999 * 120.03932 * 0.02562 * 9 8 7 32 32 H 1.08002 * 119.96028 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.46776 * 210.00059 * 12 11 10 34 34 H 1.09003 * 109.47041 * 330.00009 * 12 11 10 35 35 H 0.96999 * 119.99542 * 179.97438 * 16 15 13 36 36 H 1.08002 * 119.96005 * 180.25011 * 21 11 10 37 37 H 1.07998 * 120.03682 * 179.74419 * 22 21 11 38 38 H 1.09007 * 110.36522 * 94.92236 * 23 5 4 39 39 H 1.08993 * 110.37610 * 217.25986 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7727 1.2249 5 6 3.3177 -1.5049 0.6876 6 1 3.1965 -2.5843 0.7782 7 7 4.5181 -1.0628 1.4016 8 6 5.6465 -1.8847 1.4465 9 6 6.7857 -1.4668 2.1226 10 6 7.8995 -2.2822 2.1655 11 6 7.8835 -3.5111 1.5314 12 6 9.1031 -4.3952 1.5746 13 6 9.0269 -5.2977 2.7791 14 1 8.1797 -5.2373 3.4463 15 6 10.0380 -6.2012 3.0288 16 7 9.9716 -6.9884 4.0802 17 14 11.5022 -6.3070 1.8735 18 1 12.5618 -5.3725 2.3306 19 1 12.0324 -7.6942 1.8722 20 1 11.0762 -5.9386 0.4994 21 6 6.7491 -3.9326 0.8623 22 6 5.6318 -3.1222 0.8155 23 6 3.3890 -1.0913 -0.7991 24 8 2.0328 -0.7249 -1.1435 25 1 -0.3634 0.4786 0.9094 26 1 -0.3633 0.5483 -0.8691 27 1 -0.3633 -1.0269 -0.0403 28 1 1.3275 -1.4902 1.5788 29 1 2.3429 -0.0817 2.0217 30 1 4.5293 -0.1992 1.8431 31 1 6.8001 -0.5056 2.6148 32 1 8.7857 -1.9577 2.6906 33 1 9.1453 -5.0006 0.6691 34 1 9.9982 -3.7766 1.6402 35 1 10.6829 -7.6242 4.2556 36 1 6.7386 -4.8947 0.3716 37 1 4.7476 -3.4502 0.2892 38 1 4.0554 -0.2377 -0.9239 39 1 3.7252 -1.9287 -1.4103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903294350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:27 Heat of formation + Delta-G solvation = -26.358202 kcal Electronic energy + Delta-G solvation = -18810.078363 eV Core-core repulsion = 15909.999236 eV Total energy + Delta-G solvation = -2900.079127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05673 -38.66682 -35.51111 -33.03703 -32.39248 -31.28143 -30.29507 -29.29295 -26.31544 -26.24438 -22.86202 -22.52331 -21.72670 -20.77759 -19.92859 -17.37467 -16.70944 -16.69778 -15.79718 -15.53855 -15.24871 -14.68585 -14.09258 -13.90609 -13.65930 -13.21113 -13.05007 -12.86773 -12.63571 -12.43039 -12.35787 -12.03868 -11.81680 -11.61946 -11.49111 -11.19084 -10.99604 -10.61292 -10.28407 -10.16789 -10.02606 -9.91608 -9.42943 -9.11792 -8.53814 -8.31309 -6.84161 -6.02789 -4.00891 2.04647 2.25970 3.31588 3.34761 3.39215 3.42789 3.80227 4.25824 4.38811 4.45678 4.54356 4.68992 4.89083 4.91172 5.07430 5.28699 5.29843 5.30778 5.45479 5.46332 5.50388 5.64766 5.67757 5.71025 5.81013 5.93973 6.04445 6.20907 6.31524 6.55614 6.61358 6.76581 7.05269 7.08631 7.16351 7.36368 7.70926 7.72249 7.78385 7.95144 8.56634 9.03835 9.58376 11.10412 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.049320 B = 0.003412 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.586130 B = 8205.104405 C = 8248.025169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.067 0.933 4 C -0.158 4.158 5 C 0.125 3.875 6 H 0.093 0.907 7 N -0.747 5.747 8 C 0.181 3.819 9 C -0.190 4.190 10 C -0.077 4.077 11 C -0.078 4.078 12 C 0.019 3.981 13 C -0.510 4.510 14 H 0.073 0.927 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C -0.077 4.077 22 C -0.194 4.194 23 C 0.029 3.971 24 O -0.373 6.373 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.394 0.606 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.024 0.976 34 H 0.020 0.980 35 H 0.263 0.737 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 14.895 -7.743 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.196 4.196 5 C 0.018 3.982 6 H 0.111 0.889 7 N -0.380 5.380 8 C 0.082 3.918 9 C -0.213 4.213 10 C -0.096 4.096 11 C -0.080 4.080 12 C -0.018 4.018 13 C -0.548 4.548 14 H 0.091 0.909 15 C -0.134 4.134 16 N -0.542 5.542 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.096 4.096 22 C -0.216 4.216 23 C -0.049 4.049 24 O -0.292 6.292 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.229 0.771 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.803 14.591 -7.948 22.931 hybrid contribution 0.961 0.167 -0.010 0.976 sum -14.842 14.758 -7.959 22.392 Atomic orbital electron populations 1.21811 0.93150 1.03089 1.02382 1.22952 0.95345 0.95392 0.85107 0.91457 1.23266 0.97509 1.00291 0.98556 1.22120 0.84801 1.00162 0.91088 0.88878 1.44454 1.11523 1.20824 1.61241 1.17624 0.86786 0.90904 0.96438 1.20451 0.93574 1.01129 1.06100 1.20814 0.97324 0.93781 0.97666 1.20068 0.97012 0.94493 0.96413 1.18712 0.90971 0.94113 0.98010 1.21014 1.07621 1.17775 1.08373 0.90910 1.25021 0.98061 0.95241 0.95114 1.69908 1.33825 1.23030 1.27414 0.86805 0.83178 0.77289 0.82232 1.20246 1.21360 1.18906 1.20829 0.92175 0.98378 0.98190 1.20541 0.99492 0.94761 1.06854 1.24081 0.84085 1.00677 0.96063 1.89178 1.27395 1.74444 1.38171 0.91148 0.91883 0.91615 0.89601 0.89917 0.77106 0.87240 0.86441 0.95740 0.96189 0.92712 0.86469 0.87157 0.91717 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.52 37.16 0.35 -0.65 16 2 C 0.07 0.59 3.93 -25.95 -0.10 0.49 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.16 -1.30 6.39 -25.16 -0.16 -1.46 16 5 C 0.13 1.30 3.12 -66.36 -0.21 1.09 16 6 H 0.09 1.05 6.50 -51.93 -0.34 0.71 16 7 N -0.75 -8.69 5.28 -50.65 -0.27 -8.96 16 8 C 0.18 2.78 6.65 -83.79 -0.56 2.22 16 9 C -0.19 -3.09 9.90 -39.38 -0.39 -3.48 16 10 C -0.08 -1.48 9.69 -39.61 -0.38 -1.86 16 11 C -0.08 -1.67 5.07 -104.59 -0.53 -2.20 16 12 C 0.02 0.46 4.17 -29.04 -0.12 0.34 16 13 C -0.51 -14.66 9.65 -34.44 -0.33 -14.99 16 14 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 17 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 21 C -0.08 -1.48 9.69 -39.61 -0.38 -1.87 16 22 C -0.19 -3.20 9.22 -39.38 -0.36 -3.56 16 23 C 0.03 0.31 7.37 37.94 0.28 0.59 16 24 O -0.37 -4.20 11.35 -35.23 -0.40 -4.60 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 29 H 0.08 0.59 7.68 -51.93 -0.40 0.19 16 30 H 0.39 3.88 8.36 -40.82 -0.34 3.54 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.02 0.59 7.14 -51.93 -0.37 0.22 16 34 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 37 H 0.11 1.57 6.25 -52.49 -0.33 1.24 16 38 H 0.06 0.70 8.06 -51.92 -0.42 0.28 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -31.61 319.19 -8.71 -40.32 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.96 Total: 2.14 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -3.00 Total: -23.47 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.51 Total: -36.15 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.40 Total: -4.60 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.61 -8.71 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.966 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds