Wall clock time and date at job start Mon Mar 30 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.33149 * 2 1 4 4 C 1.54485 * 110.36992 * 122.24525 * 2 1 3 5 5 C 1.54509 * 104.05889 * 142.81219 * 4 2 1 6 6 H 1.09002 * 110.50994 * 241.21945 * 5 4 2 7 7 N 1.46500 * 110.51340 * 118.64557 * 5 4 2 8 8 C 1.39676 * 120.00062 * 156.89770 * 7 5 4 9 9 C 1.38906 * 120.07171 * 179.97438 * 8 7 5 10 10 C 1.38111 * 119.92343 * 179.97438 * 9 8 7 11 11 C 1.38288 * 120.07382 * 0.28047 * 10 9 8 12 12 C 1.50698 * 119.92407 * 179.69843 * 11 10 9 13 13 C 1.50695 * 109.47077 * 90.00107 * 12 11 10 14 14 H 1.08001 * 119.99903 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00403 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00151 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99599 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46983 * 90.00251 * 17 15 13 19 19 H 1.48500 * 109.46872 * 210.00176 * 17 15 13 20 20 H 1.48505 * 109.46970 * 330.00218 * 17 15 13 21 21 C 1.38286 * 120.14755 * 359.44532 * 11 10 9 22 22 C 1.38112 * 120.07587 * 0.55318 * 21 11 10 23 23 C 1.54485 * 104.18751 * 359.92729 * 5 4 2 24 24 O 1.44422 * 110.37282 * 237.62884 * 2 1 3 25 25 H 1.09004 * 109.47551 * 297.75506 * 1 2 3 26 26 H 1.08999 * 109.47089 * 57.75282 * 1 2 3 27 27 H 1.09002 * 109.47184 * 177.74997 * 1 2 3 28 28 H 1.08998 * 110.50912 * 24.16996 * 4 2 1 29 29 H 1.08999 * 110.51234 * 261.45399 * 4 2 1 30 30 H 0.96994 * 119.99675 * 336.90198 * 7 5 4 31 31 H 1.07999 * 120.03932 * 0.02562 * 9 8 7 32 32 H 1.08002 * 119.96028 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.46776 * 210.00059 * 12 11 10 34 34 H 1.09003 * 109.47041 * 330.00009 * 12 11 10 35 35 H 0.96999 * 119.99542 * 179.97438 * 16 15 13 36 36 H 1.08002 * 119.96005 * 180.25011 * 21 11 10 37 37 H 1.07998 * 120.03682 * 179.74419 * 22 21 11 38 38 H 1.09007 * 110.36522 * 94.92236 * 23 5 4 39 39 H 1.08993 * 110.37610 * 217.25986 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7727 1.2249 5 6 3.3177 -1.5049 0.6876 6 1 3.1965 -2.5843 0.7782 7 7 4.5181 -1.0628 1.4016 8 6 5.6465 -1.8847 1.4465 9 6 6.7857 -1.4668 2.1226 10 6 7.8995 -2.2822 2.1655 11 6 7.8835 -3.5111 1.5314 12 6 9.1031 -4.3952 1.5746 13 6 9.0269 -5.2977 2.7791 14 1 8.1797 -5.2373 3.4463 15 6 10.0380 -6.2012 3.0288 16 7 9.9716 -6.9884 4.0802 17 14 11.5022 -6.3070 1.8735 18 1 12.5618 -5.3725 2.3306 19 1 12.0324 -7.6942 1.8722 20 1 11.0762 -5.9386 0.4994 21 6 6.7491 -3.9326 0.8623 22 6 5.6318 -3.1222 0.8155 23 6 3.3890 -1.0913 -0.7991 24 8 2.0328 -0.7249 -1.1435 25 1 -0.3634 0.4786 0.9094 26 1 -0.3633 0.5483 -0.8691 27 1 -0.3633 -1.0269 -0.0403 28 1 1.3275 -1.4902 1.5788 29 1 2.3429 -0.0817 2.0217 30 1 4.5293 -0.1992 1.8431 31 1 6.8001 -0.5056 2.6148 32 1 8.7857 -1.9577 2.6906 33 1 9.1453 -5.0006 0.6691 34 1 9.9982 -3.7766 1.6402 35 1 10.6829 -7.6242 4.2556 36 1 6.7386 -4.8947 0.3716 37 1 4.7476 -3.4502 0.2892 38 1 4.0554 -0.2377 -0.9239 39 1 3.7252 -1.9287 -1.4103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903294350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:27 Heat of formation + Delta-G solvation = -46.154372 kcal Electronic energy + Delta-G solvation = -18810.936789 eV Core-core repulsion = 15909.999236 eV Total energy + Delta-G solvation = -2900.937553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.96021 -39.89083 -36.73312 -34.96727 -33.21251 -32.67622 -31.69844 -30.58514 -27.89015 -26.94353 -24.45117 -23.90865 -22.58318 -21.84136 -21.27551 -18.93081 -18.48888 -17.56725 -16.69345 -16.56228 -16.40851 -16.06420 -15.74530 -15.11293 -14.86128 -14.55463 -14.30955 -14.14614 -13.90235 -13.50148 -13.46653 -13.31367 -13.03113 -12.82080 -12.58604 -12.39697 -12.13662 -11.92658 -11.77581 -11.72201 -11.55256 -11.45302 -10.86264 -10.76446 -10.54132 -9.69877 -8.28515 -8.10595 -6.31634 0.65790 0.84868 1.37149 1.39097 1.51566 2.37363 2.40169 3.02721 3.06752 3.10460 3.53267 3.73459 3.94729 4.07183 4.17370 4.21878 4.24683 4.42820 4.45714 4.63336 4.65835 4.72296 4.75770 4.81244 4.84640 4.97632 5.02159 5.10519 5.12307 5.16499 5.28565 5.33510 5.50192 5.61144 5.68286 5.82428 6.03564 6.15440 6.31249 6.52983 6.75263 6.91531 7.31794 8.89254 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.049320 B = 0.003412 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.586130 B = 8205.104405 C = 8248.025169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.077 0.923 4 C -0.150 4.150 5 C 0.122 3.878 6 H 0.086 0.914 7 N -0.731 5.731 8 C 0.197 3.803 9 C -0.189 4.189 10 C -0.089 4.089 11 C -0.120 4.120 12 C 0.027 3.973 13 C -0.516 4.516 14 H 0.026 0.974 15 C 0.004 3.996 16 N -0.952 5.952 17 Si 0.952 3.048 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.247 1.247 21 C -0.089 4.089 22 C -0.197 4.197 23 C 0.032 3.968 24 O -0.393 6.393 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.407 0.593 31 H 0.141 0.859 32 H 0.116 0.884 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.267 0.733 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.065 0.935 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.568 16.947 -8.761 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.095 0.905 4 C -0.188 4.188 5 C 0.015 3.985 6 H 0.104 0.896 7 N -0.365 5.365 8 C 0.095 3.905 9 C -0.212 4.212 10 C -0.107 4.107 11 C -0.122 4.122 12 C -0.011 4.011 13 C -0.554 4.554 14 H 0.044 0.956 15 C -0.192 4.192 16 N -0.593 5.593 17 Si 0.775 3.225 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.170 1.170 21 C -0.108 4.108 22 C -0.219 4.219 23 C -0.047 4.047 24 O -0.312 6.312 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.244 0.756 31 H 0.158 0.842 32 H 0.134 0.866 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.083 0.917 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.765 16.688 -8.973 25.299 hybrid contribution 1.041 -0.382 0.349 1.162 sum -15.724 16.306 -8.624 24.238 Atomic orbital electron populations 1.21833 0.92022 1.03031 1.03399 1.23163 0.96313 0.95547 0.84247 0.90541 1.23248 0.96310 1.00476 0.98799 1.22212 0.85050 1.00105 0.91134 0.89627 1.44470 1.10701 1.20731 1.60557 1.17699 0.87518 0.90644 0.94595 1.20687 0.92733 1.01855 1.05879 1.20905 0.98570 0.93628 0.97640 1.19929 0.96852 0.95612 0.99827 1.18545 0.93026 0.93868 0.95626 1.21263 1.06079 1.18844 1.09262 0.95598 1.26017 1.01588 0.94670 0.96949 1.70069 1.35312 1.24201 1.29729 0.85634 0.78855 0.77622 0.80419 1.18959 1.20873 1.17030 1.20885 0.92688 0.98811 0.98433 1.20710 0.99259 0.94936 1.06975 1.24013 0.84145 1.00565 0.95959 1.89171 1.27515 1.74930 1.39601 0.89182 0.91955 0.92121 0.88946 0.88301 0.75563 0.84158 0.86560 0.95694 0.95680 0.92456 0.86906 0.84997 0.91725 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.52 71.98 0.68 -0.94 16 2 C 0.06 0.92 3.93 31.10 0.12 1.04 16 3 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.15 -1.98 6.39 31.61 0.20 -1.78 16 5 C 0.12 2.20 3.12 46.01 0.14 2.34 16 6 H 0.09 1.73 6.50 -2.39 -0.02 1.71 16 7 N -0.73 -14.69 5.28 -314.16 -1.66 -16.35 16 8 C 0.20 5.59 6.65 38.21 0.25 5.84 16 9 C -0.19 -5.78 9.90 22.40 0.22 -5.55 16 10 C -0.09 -3.37 9.69 22.25 0.22 -3.16 16 11 C -0.12 -5.21 5.07 -19.84 -0.10 -5.31 16 12 C 0.03 1.31 4.17 29.10 0.12 1.43 16 13 C -0.52 -30.84 9.65 25.60 0.25 -30.59 16 14 H 0.03 1.73 7.98 -2.91 -0.02 1.70 16 15 C 0.00 0.25 5.47 84.66 0.46 0.71 16 16 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 17 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 18 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 21 C -0.09 -3.47 9.69 22.25 0.22 -3.25 16 22 C -0.20 -6.22 9.22 22.40 0.21 -6.02 16 23 C 0.03 0.61 7.37 72.49 0.53 1.14 16 24 O -0.39 -8.07 11.35 -148.98 -1.69 -9.76 16 25 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 1.14 7.87 -2.39 -0.02 1.12 16 29 H 0.10 1.01 7.68 -2.39 -0.02 0.99 16 30 H 0.41 6.39 8.36 -92.71 -0.77 5.62 16 31 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.02 1.20 7.14 -2.39 -0.02 1.19 16 34 H 0.02 1.19 7.51 -2.39 -0.02 1.17 16 35 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 36 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.13 3.53 6.25 -2.91 -0.02 3.51 16 38 H 0.06 1.24 8.06 -2.38 -0.02 1.22 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.41 319.19 2.57 -67.84 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.20 Total: 16.16 kcal Atomic # 6 Polarization: -47.62 SS G_CDS: 3.53 Total: -44.09 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -1.36 Total: -76.97 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -1.69 Total: -9.76 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -70.41 2.57 -67.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.681 kcal (2) G-P(sol) polarization free energy of solvation -70.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds