Wall clock time and date at job start Mon Mar 30 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 110.28052 * 2 1 4 4 C 1.55210 * 110.45535 * 238.03411 * 2 1 3 5 5 C 1.55302 * 100.82961 * 204.75952 * 4 2 1 6 6 H 1.08996 * 110.84670 * 275.59853 * 5 4 2 7 7 N 1.46498 * 110.84593 * 152.18086 * 5 4 2 8 8 C 1.39678 * 119.99677 * 157.77334 * 7 5 4 9 9 C 1.38915 * 120.06984 * 180.02562 * 8 7 5 10 10 C 1.38104 * 119.92359 * 179.97438 * 9 8 7 11 11 C 1.38288 * 120.07208 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.92272 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47072 * 269.99941 * 12 11 10 14 14 H 1.07997 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99911 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00008 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99866 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46929 * 59.99929 * 17 15 13 19 19 H 1.48494 * 109.46715 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47070 * 299.99821 * 17 15 13 21 21 C 1.38290 * 120.15288 * 0.02562 * 11 10 9 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 11 10 23 23 C 1.54378 * 102.43856 * 33.88793 * 5 4 2 24 24 O 1.43240 * 107.58741 * 338.74756 * 23 5 4 25 25 H 1.09000 * 109.46887 * 299.36966 * 1 2 3 26 26 H 1.08999 * 109.46917 * 59.36210 * 1 2 3 27 27 H 1.08997 * 109.47255 * 179.36873 * 1 2 3 28 28 H 1.09001 * 111.29757 * 86.82533 * 4 2 1 29 29 H 1.09001 * 111.05042 * 322.59034 * 4 2 1 30 30 H 0.96998 * 120.00114 * 337.76737 * 7 5 4 31 31 H 1.07998 * 120.03739 * 359.69591 * 9 8 7 32 32 H 1.08001 * 119.96576 * 179.97438 * 10 9 8 33 33 H 1.08996 * 109.47616 * 29.99912 * 12 11 10 34 34 H 1.09001 * 109.46889 * 150.00715 * 12 11 10 35 35 H 0.96998 * 120.00104 * 179.97438 * 16 15 13 36 36 H 1.07997 * 119.96313 * 180.02562 * 21 11 10 37 37 H 1.08007 * 120.03349 * 179.97438 * 22 21 11 38 38 H 1.09006 * 109.83097 * 98.25478 * 23 5 4 39 39 H 1.09000 * 109.83283 * 219.13818 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0724 -0.7699 -1.2337 5 6 3.4721 -1.2003 -0.7168 6 1 4.2013 -0.4034 -0.8624 7 7 3.9134 -2.4338 -1.3724 8 6 5.2732 -2.7483 -1.4260 9 6 5.6934 -3.9173 -2.0478 10 6 7.0387 -4.2250 -2.0995 11 6 7.9672 -3.3706 -1.5336 12 6 9.4344 -3.7093 -1.5925 13 6 9.8123 -4.5184 -0.3785 14 1 9.0647 -4.7632 0.3614 15 6 11.1123 -4.9470 -0.2130 16 7 12.0226 -4.6494 -1.1142 17 14 11.5805 -5.9505 1.2915 18 1 10.7835 -7.2031 1.3185 19 1 13.0263 -6.2842 1.2335 20 1 11.3040 -5.1612 2.5186 21 6 7.5524 -2.2060 -0.9139 22 6 6.2086 -1.8923 -0.8586 23 6 3.2125 -1.4395 0.7861 24 8 2.0285 -0.7158 1.1413 25 1 -0.3633 0.5040 0.8956 26 1 -0.3633 0.5237 -0.8842 27 1 -0.3633 -1.0276 -0.0113 28 1 2.1580 -0.1164 -2.1019 29 1 1.4521 -1.6379 -1.4573 30 1 3.2612 -3.0322 -1.7693 31 1 4.9684 -4.5870 -2.4864 32 1 7.3660 -5.1339 -2.5824 33 1 9.6378 -4.2888 -2.4930 34 1 10.0191 -2.7896 -1.6125 35 1 12.9372 -4.9506 -0.9976 36 1 8.2801 -1.5407 -0.4733 37 1 5.8853 -0.9828 -0.3741 38 1 3.0649 -2.5035 0.9711 39 1 4.0585 -1.0767 1.3699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903294351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:29 Heat of formation + Delta-G solvation = -31.155663 kcal Electronic energy + Delta-G solvation = -18792.072164 eV Core-core repulsion = 15891.785003 eV Total energy + Delta-G solvation = -2900.287161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02740 -38.62126 -35.47362 -33.08540 -32.39896 -31.15967 -30.21271 -29.04698 -26.27083 -26.00734 -23.00000 -22.65531 -21.44232 -20.94935 -19.88254 -17.51461 -16.62281 -16.30975 -16.21456 -15.46342 -14.84853 -14.39560 -14.22383 -13.92447 -13.56812 -13.18567 -13.10522 -12.77473 -12.67376 -12.61145 -12.25236 -11.99326 -11.64120 -11.40536 -11.23123 -11.18336 -11.09499 -10.64151 -10.53287 -10.11331 -9.81295 -9.70528 -9.42518 -9.05252 -8.36988 -8.26246 -6.82759 -5.97388 -4.01896 2.09720 2.31870 3.32271 3.35217 3.39012 3.42618 3.72829 4.18533 4.43459 4.49791 4.61989 4.70959 4.85143 4.92297 5.02784 5.32167 5.35348 5.36978 5.45364 5.51369 5.52699 5.64528 5.66317 5.80037 5.85085 6.04259 6.11115 6.30178 6.41733 6.68803 6.77826 6.84160 7.28027 7.29386 7.38815 7.60485 7.78784 7.96918 7.97940 7.99371 8.40930 9.03739 9.61599 11.11151 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.037855 B = 0.003538 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.487132 B = 7913.160211 C = 8258.091820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.072 0.928 4 C -0.158 4.158 5 C 0.127 3.873 6 H 0.094 0.906 7 N -0.745 5.745 8 C 0.177 3.823 9 C -0.190 4.190 10 C -0.080 4.080 11 C -0.081 4.081 12 C 0.053 3.947 13 C -0.510 4.510 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.081 4.081 22 C -0.194 4.194 23 C 0.033 3.967 24 O -0.381 6.381 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.395 0.605 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.739 8.406 -1.111 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 H 0.090 0.910 4 C -0.197 4.197 5 C 0.020 3.980 6 H 0.112 0.888 7 N -0.379 5.379 8 C 0.078 3.922 9 C -0.212 4.212 10 C -0.099 4.099 11 C -0.082 4.082 12 C 0.016 3.984 13 C -0.548 4.548 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.099 4.099 22 C -0.216 4.216 23 C -0.046 4.046 24 O -0.300 6.300 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.230 0.770 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.630 8.549 -0.861 22.348 hybrid contribution 0.243 -0.853 0.541 1.039 sum -20.387 7.696 -0.320 21.793 Atomic orbital electron populations 1.21876 0.93625 1.02833 1.02432 1.22924 0.94969 0.95626 0.84637 0.90999 1.23593 0.95865 1.01392 0.98811 1.22261 0.95776 0.88644 0.91336 0.88807 1.44274 1.04351 1.23982 1.65254 1.17604 0.83155 0.94399 0.97009 1.20462 0.96309 0.97451 1.06974 1.20847 0.91616 0.98824 0.98588 1.20489 0.98607 0.93234 0.95915 1.18251 0.85544 0.97081 0.97524 1.21094 0.94283 1.33141 1.06281 0.92603 1.25018 0.96547 0.96334 0.96513 1.69948 1.02584 1.46323 1.34694 0.86625 0.77242 0.80670 0.83309 1.20218 1.21298 1.20210 1.20858 0.94238 0.97029 0.97796 1.20533 0.93140 1.00490 1.07475 1.23767 0.87607 0.97260 0.95919 1.88439 1.42698 1.65108 1.33736 0.91769 0.91229 0.91945 0.89348 0.89904 0.77007 0.87348 0.86495 0.95657 0.95663 0.92884 0.86551 0.87383 0.90699 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.63 37.15 0.36 -0.69 16 2 C 0.08 0.66 4.07 -25.56 -0.10 0.56 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.16 -1.27 6.23 -24.34 -0.15 -1.43 16 5 C 0.13 1.33 2.99 -65.99 -0.20 1.13 16 6 H 0.09 1.01 6.53 -51.93 -0.34 0.67 16 7 N -0.75 -8.91 5.30 -50.29 -0.27 -9.18 16 8 C 0.18 2.77 6.65 -83.78 -0.56 2.21 16 9 C -0.19 -3.16 9.90 -39.38 -0.39 -3.55 16 10 C -0.08 -1.58 9.69 -39.61 -0.38 -1.96 16 11 C -0.08 -1.78 5.07 -104.58 -0.53 -2.31 16 12 C 0.05 1.38 5.10 -29.03 -0.15 1.23 16 13 C -0.51 -14.49 9.09 -34.44 -0.31 -14.80 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 17 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C -0.08 -1.59 9.69 -39.61 -0.38 -1.97 16 22 C -0.19 -3.26 9.22 -39.38 -0.36 -3.63 16 23 C 0.03 0.38 7.56 37.88 0.29 0.67 16 24 O -0.38 -4.50 11.04 -35.23 -0.39 -4.88 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 30 H 0.40 4.06 8.55 -40.82 -0.35 3.71 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 36 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.11 1.57 6.25 -52.48 -0.33 1.24 16 38 H 0.07 0.92 8.02 -51.93 -0.42 0.51 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -30.80 323.35 -9.07 -39.87 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.03 Total: 1.59 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -2.98 Total: -23.01 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.47 Total: -35.24 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.39 Total: -4.88 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.80 -9.07 -39.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.715 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds