Wall clock time and date at job start Mon Mar 30 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 110.28052 * 2 1 4 4 C 1.55210 * 110.45535 * 238.03411 * 2 1 3 5 5 C 1.55302 * 100.82961 * 204.75952 * 4 2 1 6 6 H 1.08996 * 110.84670 * 275.59853 * 5 4 2 7 7 N 1.46498 * 110.84593 * 152.18086 * 5 4 2 8 8 C 1.39678 * 119.99677 * 157.77334 * 7 5 4 9 9 C 1.38915 * 120.06984 * 180.02562 * 8 7 5 10 10 C 1.38104 * 119.92359 * 179.97438 * 9 8 7 11 11 C 1.38288 * 120.07208 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.92272 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47072 * 269.99941 * 12 11 10 14 14 H 1.07997 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99911 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00008 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99866 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46929 * 59.99929 * 17 15 13 19 19 H 1.48494 * 109.46715 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47070 * 299.99821 * 17 15 13 21 21 C 1.38290 * 120.15288 * 0.02562 * 11 10 9 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 11 10 23 23 C 1.54378 * 102.43856 * 33.88793 * 5 4 2 24 24 O 1.43240 * 107.58741 * 338.74756 * 23 5 4 25 25 H 1.09000 * 109.46887 * 299.36966 * 1 2 3 26 26 H 1.08999 * 109.46917 * 59.36210 * 1 2 3 27 27 H 1.08997 * 109.47255 * 179.36873 * 1 2 3 28 28 H 1.09001 * 111.29757 * 86.82533 * 4 2 1 29 29 H 1.09001 * 111.05042 * 322.59034 * 4 2 1 30 30 H 0.96998 * 120.00114 * 337.76737 * 7 5 4 31 31 H 1.07998 * 120.03739 * 359.69591 * 9 8 7 32 32 H 1.08001 * 119.96576 * 179.97438 * 10 9 8 33 33 H 1.08996 * 109.47616 * 29.99912 * 12 11 10 34 34 H 1.09001 * 109.46889 * 150.00715 * 12 11 10 35 35 H 0.96998 * 120.00104 * 179.97438 * 16 15 13 36 36 H 1.07997 * 119.96313 * 180.02562 * 21 11 10 37 37 H 1.08007 * 120.03349 * 179.97438 * 22 21 11 38 38 H 1.09006 * 109.83097 * 98.25478 * 23 5 4 39 39 H 1.09000 * 109.83283 * 219.13818 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0724 -0.7699 -1.2337 5 6 3.4721 -1.2003 -0.7168 6 1 4.2013 -0.4034 -0.8624 7 7 3.9134 -2.4338 -1.3724 8 6 5.2732 -2.7483 -1.4260 9 6 5.6934 -3.9173 -2.0478 10 6 7.0387 -4.2250 -2.0995 11 6 7.9672 -3.3706 -1.5336 12 6 9.4344 -3.7093 -1.5925 13 6 9.8123 -4.5184 -0.3785 14 1 9.0647 -4.7632 0.3614 15 6 11.1123 -4.9470 -0.2130 16 7 12.0226 -4.6494 -1.1142 17 14 11.5805 -5.9505 1.2915 18 1 10.7835 -7.2031 1.3185 19 1 13.0263 -6.2842 1.2335 20 1 11.3040 -5.1612 2.5186 21 6 7.5524 -2.2060 -0.9139 22 6 6.2086 -1.8923 -0.8586 23 6 3.2125 -1.4395 0.7861 24 8 2.0285 -0.7158 1.1413 25 1 -0.3633 0.5040 0.8956 26 1 -0.3633 0.5237 -0.8842 27 1 -0.3633 -1.0276 -0.0113 28 1 2.1580 -0.1164 -2.1019 29 1 1.4521 -1.6379 -1.4573 30 1 3.2612 -3.0322 -1.7693 31 1 4.9684 -4.5870 -2.4864 32 1 7.3660 -5.1339 -2.5824 33 1 9.6378 -4.2888 -2.4930 34 1 10.0191 -2.7896 -1.6125 35 1 12.9372 -4.9506 -0.9976 36 1 8.2801 -1.5407 -0.4733 37 1 5.8853 -0.9828 -0.3741 38 1 3.0649 -2.5035 0.9711 39 1 4.0585 -1.0767 1.3699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903294351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:29 Heat of formation + Delta-G solvation = -49.516734 kcal Electronic energy + Delta-G solvation = -18792.868359 eV Core-core repulsion = 15891.785003 eV Total energy + Delta-G solvation = -2901.083356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95241 -39.90165 -36.74192 -35.03217 -33.17968 -32.51672 -31.66422 -30.40631 -27.72914 -26.97367 -24.83400 -23.92455 -22.22936 -22.15140 -21.21497 -18.56808 -18.42253 -17.58723 -17.24953 -16.75102 -16.31434 -15.77765 -15.47747 -15.00056 -14.67860 -14.52492 -14.30171 -14.10405 -14.04012 -13.59797 -13.35477 -13.19267 -13.09656 -12.72576 -12.54119 -12.52895 -12.40026 -12.14111 -11.81179 -11.61043 -11.58280 -11.34826 -10.63399 -10.57897 -10.50047 -9.69968 -8.32526 -7.99549 -6.30394 0.65690 0.85402 1.39748 1.42659 1.50953 2.35978 2.41376 2.93298 3.12368 3.12599 3.46353 3.82066 3.90065 4.02911 4.14690 4.22918 4.25450 4.43299 4.50381 4.61793 4.69718 4.74629 4.77219 4.82197 4.87596 4.95785 5.05297 5.16671 5.19635 5.30791 5.36497 5.39242 5.53632 5.69288 5.80593 6.00086 6.04350 6.22464 6.24091 6.52700 6.82931 6.90545 7.37945 8.91684 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.037855 B = 0.003538 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.487132 B = 7913.160211 C = 8258.091820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 H 0.080 0.920 4 C -0.146 4.146 5 C 0.124 3.876 6 H 0.096 0.904 7 N -0.730 5.730 8 C 0.196 3.804 9 C -0.186 4.186 10 C -0.090 4.090 11 C -0.120 4.120 12 C 0.063 3.937 13 C -0.527 4.527 14 H 0.052 0.948 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.268 1.268 21 C -0.090 4.090 22 C -0.193 4.193 23 C 0.034 3.966 24 O -0.401 6.401 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.408 0.592 31 H 0.141 0.859 32 H 0.111 0.889 33 H -0.002 1.002 34 H -0.003 1.003 35 H 0.265 0.735 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.065 0.935 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.531 8.681 -0.696 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 H 0.098 0.902 4 C -0.184 4.184 5 C 0.017 3.983 6 H 0.113 0.887 7 N -0.363 5.363 8 C 0.094 3.906 9 C -0.208 4.208 10 C -0.109 4.109 11 C -0.122 4.122 12 C 0.026 3.974 13 C -0.565 4.565 14 H 0.071 0.929 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.193 1.193 21 C -0.109 4.109 22 C -0.215 4.215 23 C -0.044 4.044 24 O -0.321 6.321 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.245 0.755 31 H 0.159 0.841 32 H 0.130 0.870 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.083 0.917 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.478 8.836 -0.450 25.090 hybrid contribution 0.957 -0.854 0.394 1.342 sum -22.521 7.982 -0.056 23.894 Atomic orbital electron populations 1.21886 0.92354 1.02934 1.03341 1.23183 0.96029 0.95800 0.83923 0.90186 1.23569 0.93881 1.01942 0.99014 1.22386 0.97376 0.87780 0.90777 0.88660 1.44289 1.02946 1.24668 1.64352 1.17660 0.84699 0.93331 0.94878 1.20672 0.95381 0.98203 1.06538 1.20850 0.92852 0.98411 0.98738 1.20157 0.96450 0.95687 0.99870 1.17984 0.88710 0.94995 0.95712 1.21430 0.94608 1.33537 1.06965 0.92929 1.25947 0.96432 0.97440 0.99740 1.70079 1.03003 1.47455 1.36705 0.85514 0.77177 0.79133 0.79322 1.19268 1.20517 1.19346 1.20835 0.95764 0.96316 0.98002 1.20686 0.91897 1.01578 1.07320 1.23678 0.87574 0.96718 0.96476 1.88430 1.42677 1.65455 1.35500 0.92137 0.89070 0.92265 0.87456 0.89001 0.75499 0.84112 0.87044 0.98343 0.98435 0.92637 0.87285 0.84887 0.91657 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.63 71.98 0.69 -0.94 16 2 C 0.07 0.97 4.07 31.35 0.13 1.10 16 3 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.15 -1.78 6.23 32.14 0.20 -1.58 16 5 C 0.12 2.18 2.99 46.25 0.14 2.32 16 6 H 0.10 1.73 6.53 -2.39 -0.02 1.71 16 7 N -0.73 -14.82 5.30 -313.04 -1.66 -16.48 16 8 C 0.20 5.62 6.65 38.21 0.25 5.87 16 9 C -0.19 -5.80 9.90 22.40 0.22 -5.58 16 10 C -0.09 -3.56 9.69 22.25 0.22 -3.35 16 11 C -0.12 -5.48 5.07 -19.84 -0.10 -5.58 16 12 C 0.06 3.50 5.10 29.10 0.15 3.65 16 13 C -0.53 -31.11 9.09 25.60 0.23 -30.88 16 14 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 15 C 0.00 0.13 5.46 84.66 0.46 0.59 16 16 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 17 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.09 -3.63 9.69 22.25 0.22 -3.42 16 22 C -0.19 -6.17 9.22 22.40 0.21 -5.97 16 23 C 0.03 0.71 7.56 72.45 0.55 1.26 16 24 O -0.40 -8.66 11.04 -148.98 -1.65 -10.30 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 28 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 0.99 7.91 -2.39 -0.02 0.98 16 30 H 0.41 6.61 8.55 -92.71 -0.79 5.82 16 31 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 34 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 35 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.13 3.55 6.25 -2.91 -0.02 3.53 16 38 H 0.07 1.48 8.02 -2.38 -0.02 1.46 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -68.61 323.35 2.81 -65.81 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.24 Total: 13.39 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 3.56 Total: -42.49 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.37 Total: -73.74 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -1.65 Total: -10.30 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.61 2.81 -65.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.289 kcal (2) G-P(sol) polarization free energy of solvation -68.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds