Wall clock time and date at job start Mon Mar 30 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.55081 * 2 1 4 4 C 1.55229 * 110.77568 * 122.85995 * 2 1 3 5 5 C 1.54812 * 101.98896 * 155.50206 * 4 2 1 6 6 H 1.08996 * 110.48564 * 98.00278 * 5 4 2 7 7 N 1.46497 * 110.49207 * 220.52007 * 5 4 2 8 8 C 1.39674 * 120.00142 * 203.15479 * 7 5 4 9 9 C 1.38914 * 120.07361 * 179.97438 * 8 7 5 10 10 C 1.38098 * 119.92458 * 180.02562 * 9 8 7 11 11 C 1.38286 * 120.07639 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.92681 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46817 * 89.99781 * 12 11 10 14 14 H 1.07995 * 120.00167 * 359.72198 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 C 1.38291 * 120.14745 * 0.27021 * 11 10 9 22 22 C 1.38105 * 120.07502 * 359.44997 * 21 11 10 23 23 C 1.54103 * 104.30479 * 339.26252 * 5 4 2 24 24 O 1.43746 * 107.29294 * 357.90090 * 23 5 4 25 25 H 1.09005 * 109.47222 * 181.42894 * 1 2 3 26 26 H 1.09000 * 109.47572 * 301.42806 * 1 2 3 27 27 H 1.09002 * 109.46960 * 61.43307 * 1 2 3 28 28 H 1.09005 * 110.89366 * 37.37036 * 4 2 1 29 29 H 1.09001 * 111.02442 * 273.69296 * 4 2 1 30 30 H 0.97004 * 119.99963 * 23.15084 * 7 5 4 31 31 H 1.08004 * 120.03664 * 0.04646 * 9 8 7 32 32 H 1.07999 * 119.96653 * 179.97438 * 10 9 8 33 33 H 1.09000 * 109.47247 * 329.99844 * 12 11 10 34 34 H 1.09001 * 109.47358 * 209.99270 * 12 11 10 35 35 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 36 36 H 1.08002 * 119.96182 * 179.71254 * 21 11 10 37 37 H 1.07995 * 120.03746 * 180.27364 * 22 21 11 38 38 H 1.08995 * 109.87876 * 117.32627 * 23 5 4 39 39 H 1.08997 * 109.87818 * 238.33055 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0806 -0.7875 1.2191 5 6 3.4831 -1.2129 0.7204 6 1 4.2449 -0.5296 1.0957 7 7 3.7796 -2.5866 1.1340 8 6 5.1052 -3.0150 1.2345 9 6 5.3882 -4.3171 1.6271 10 6 6.7000 -4.7373 1.7259 11 6 7.7314 -3.8633 1.4350 12 6 9.1616 -4.3251 1.5445 13 6 9.6079 -4.8953 0.2228 14 1 8.9229 -4.9247 -0.6116 15 6 10.8893 -5.3840 0.0803 16 7 11.7218 -5.3532 1.0980 17 14 11.4427 -6.0901 -1.5582 18 1 11.3386 -5.0451 -2.6080 19 1 12.8521 -6.5453 -1.4502 20 1 10.5773 -7.2418 -1.9186 21 6 7.4534 -2.5645 1.0498 22 6 6.1437 -2.1395 0.9434 23 6 3.3853 -1.1211 -0.8148 24 8 2.0385 -0.7338 -1.1348 25 1 -0.3634 -1.0274 0.0256 26 1 -0.3634 0.5358 0.8769 27 1 -0.3633 0.4914 -0.9026 28 1 1.4618 -1.6597 1.4302 29 1 2.1580 -0.1456 2.0967 30 1 3.0553 -3.1987 1.3382 31 1 4.5831 -5.0002 1.8545 32 1 6.9207 -5.7493 2.0315 33 1 9.2378 -5.0921 2.3153 34 1 9.7972 -3.4800 1.8088 35 1 12.6231 -5.6974 0.9978 36 1 8.2613 -1.8831 0.8278 37 1 5.9272 -1.1264 0.6382 38 1 4.0846 -0.3723 -1.1866 39 1 3.6099 -2.0907 -1.2591 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903294352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:30 Heat of formation + Delta-G solvation = -48.830342 kcal Electronic energy + Delta-G solvation = -18809.864480 eV Core-core repulsion = 15908.810888 eV Total energy + Delta-G solvation = -2901.053592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94996 -39.87460 -36.70467 -35.02042 -33.14734 -32.49538 -31.65660 -30.38933 -27.72714 -26.99065 -24.83675 -23.86214 -22.37657 -21.99558 -21.23520 -18.51869 -18.35714 -17.51425 -17.21333 -16.72953 -16.48917 -15.81495 -15.58496 -14.92910 -14.65169 -14.57926 -14.22310 -14.10708 -13.97588 -13.48195 -13.25880 -13.17742 -13.09518 -12.67331 -12.53753 -12.49338 -12.40956 -12.14561 -11.81277 -11.63411 -11.56499 -11.33910 -10.82802 -10.57844 -10.45633 -9.69555 -8.31716 -7.98347 -6.30315 0.66160 0.86347 1.39746 1.42658 1.50955 2.41377 2.45208 2.92190 3.12632 3.13263 3.53574 3.80874 3.96181 4.04687 4.16156 4.23668 4.29138 4.44601 4.50890 4.56010 4.69837 4.74405 4.77471 4.85558 4.87833 4.99221 5.05026 5.13837 5.19282 5.29275 5.37182 5.39448 5.54261 5.69547 5.80670 5.93071 6.02926 6.22822 6.24599 6.54765 6.83007 6.90761 7.38015 8.91749 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038255 B = 0.003547 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.750750 B = 7891.103327 C = 8228.575113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 H 0.082 0.918 4 C -0.146 4.146 5 C 0.122 3.878 6 H 0.098 0.902 7 N -0.733 5.733 8 C 0.196 3.804 9 C -0.188 4.188 10 C -0.090 4.090 11 C -0.121 4.121 12 C 0.063 3.937 13 C -0.527 4.527 14 H 0.052 0.948 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.268 1.268 21 C -0.090 4.090 22 C -0.192 4.192 23 C 0.029 3.971 24 O -0.397 6.397 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.406 0.594 31 H 0.139 0.861 32 H 0.110 0.890 33 H -0.002 1.002 34 H -0.002 1.002 35 H 0.265 0.735 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.067 0.933 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.715 10.978 0.301 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.007 3.993 3 H 0.099 0.901 4 C -0.184 4.184 5 C 0.015 3.985 6 H 0.115 0.885 7 N -0.365 5.365 8 C 0.094 3.906 9 C -0.210 4.210 10 C -0.109 4.109 11 C -0.123 4.123 12 C 0.026 3.974 13 C -0.565 4.565 14 H 0.071 0.929 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.193 1.193 21 C -0.109 4.109 22 C -0.214 4.214 23 C -0.049 4.049 24 O -0.317 6.317 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.242 0.758 31 H 0.157 0.843 32 H 0.129 0.871 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.153 0.847 38 H 0.085 0.915 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.668 11.080 0.110 25.231 hybrid contribution 0.955 -0.810 -0.478 1.340 sum -21.713 10.270 -0.368 24.022 Atomic orbital electron populations 1.21785 0.91871 1.03008 1.03418 1.23381 0.96304 0.95610 0.84035 0.90056 1.23462 0.93936 1.01771 0.99240 1.22292 0.98698 0.84422 0.93060 0.88456 1.44498 1.03132 1.12426 1.76487 1.17676 0.85242 0.92560 0.95087 1.20665 0.96267 0.95429 1.08669 1.20837 0.92332 0.98760 0.98932 1.20151 0.96147 0.94612 1.01345 1.17982 0.89018 0.94619 0.95758 1.21431 0.97550 1.39944 0.97611 0.92944 1.25945 0.96743 0.96282 1.00587 1.70079 1.06844 1.47668 1.32651 0.85514 0.77278 0.78981 0.79369 1.19298 1.20506 1.19329 1.20846 0.96515 0.95180 0.98319 1.20692 0.91181 1.00171 1.09402 1.23782 0.84215 1.00615 0.96324 1.88890 1.28049 1.74291 1.40477 0.92251 0.88927 0.92049 0.89357 0.87560 0.75796 0.84341 0.87147 0.98416 0.98380 0.92637 0.87192 0.84669 0.91521 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.67 71.98 0.70 -0.86 16 2 C 0.06 0.90 3.97 31.36 0.12 1.02 16 3 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.15 -1.82 6.33 31.98 0.20 -1.62 16 5 C 0.12 2.15 3.05 45.98 0.14 2.29 16 6 H 0.10 1.68 6.50 -2.39 -0.02 1.67 16 7 N -0.73 -15.43 5.21 -314.29 -1.64 -17.07 16 8 C 0.20 5.70 6.65 38.21 0.25 5.96 16 9 C -0.19 -5.99 9.90 22.40 0.22 -5.77 16 10 C -0.09 -3.61 9.69 22.25 0.22 -3.39 16 11 C -0.12 -5.54 5.07 -19.84 -0.10 -5.64 16 12 C 0.06 3.52 5.10 29.10 0.15 3.67 16 13 C -0.53 -31.17 9.09 25.60 0.23 -30.93 16 14 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 15 C 0.00 0.13 5.46 84.66 0.46 0.59 16 16 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 17 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.09 -3.60 9.69 22.25 0.22 -3.39 16 22 C -0.19 -6.14 9.22 22.40 0.21 -5.93 16 23 C 0.03 0.60 7.50 72.36 0.54 1.15 16 24 O -0.40 -8.55 11.23 -148.98 -1.67 -10.23 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 1.04 7.68 -2.38 -0.02 1.02 16 29 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.41 7.14 8.39 -92.71 -0.78 6.37 16 31 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 32 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 33 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 34 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 35 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.14 3.52 6.25 -2.91 -0.02 3.50 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.79 7.93 -2.39 -0.02 1.77 16 Total: -1.00 -68.83 322.96 2.82 -66.02 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.25 Total: 14.06 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 3.56 Total: -42.86 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -1.35 Total: -74.38 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.67 Total: -10.23 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.83 2.82 -66.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.187 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds