Wall clock time and date at job start Mon Mar 30 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.99093 * 2 1 4 4 O 1.43736 * 109.87778 * 121.09018 * 2 1 3 5 5 C 1.44385 * 106.97237 * 145.93752 * 4 2 1 6 6 C 1.54993 * 103.48922 * 319.93526 * 5 4 2 7 7 C 1.54102 * 109.87376 * 238.92274 * 2 1 3 8 8 H 1.09003 * 110.48823 * 119.73797 * 7 2 1 9 9 N 1.46499 * 110.49050 * 357.22074 * 7 2 1 10 10 C 1.39671 * 119.99620 * 155.28166 * 9 7 2 11 11 C 1.38912 * 120.08022 * 359.44118 * 10 9 7 12 12 C 1.38098 * 119.92495 * 179.77180 * 11 10 9 13 13 C 1.38285 * 120.08000 * 0.51307 * 12 11 10 14 14 C 1.50689 * 119.92991 * 179.71972 * 13 12 11 15 15 C 1.50701 * 109.47698 * 270.02322 * 14 13 12 16 16 H 1.08003 * 119.99286 * 359.97438 * 15 14 13 17 17 C 1.37865 * 120.00250 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00295 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99995 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46910 * 89.99965 * 19 17 15 21 21 H 1.48493 * 109.47368 * 209.99862 * 19 17 15 22 22 H 1.48496 * 109.47009 * 330.00298 * 19 17 15 23 23 C 1.38293 * 120.14390 * 359.74118 * 13 12 11 24 24 C 1.38103 * 120.07544 * 0.02562 * 23 13 12 25 25 H 1.08997 * 109.47345 * 181.08060 * 1 2 3 26 26 H 1.08999 * 109.46974 * 301.07899 * 1 2 3 27 27 H 1.09003 * 109.47268 * 61.07759 * 1 2 3 28 28 H 1.08994 * 110.62122 * 78.44218 * 5 4 2 29 29 H 1.09009 * 110.61418 * 201.43442 * 5 4 2 30 30 H 1.08999 * 110.90767 * 278.82509 * 6 5 4 31 31 H 1.09006 * 110.90032 * 155.22714 * 6 5 4 32 32 H 0.97001 * 119.99790 * 334.99735 * 9 7 2 33 33 H 1.08005 * 120.03088 * 0.02562 * 11 10 9 34 34 H 1.08005 * 119.96252 * 180.25688 * 12 11 10 35 35 H 1.09007 * 109.47274 * 30.02491 * 14 13 12 36 36 H 1.09003 * 109.47687 * 150.01881 * 14 13 12 37 37 H 0.97001 * 119.99940 * 180.02562 * 18 17 15 38 38 H 1.08001 * 119.95818 * 180.02562 * 23 13 12 39 39 H 1.07999 * 120.03416 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6980 1.1576 5 6 3.2379 -1.3642 0.7645 6 6 2.9194 -1.8914 -0.6578 7 6 2.0539 -0.7481 -1.2412 8 1 2.6599 -0.0851 -1.8587 9 7 0.9391 -1.2946 -2.0190 10 6 1.0960 -1.5429 -3.3845 11 6 2.3044 -1.2615 -4.0091 12 6 2.4575 -1.5127 -5.3584 13 6 1.4061 -2.0339 -6.0900 14 6 1.5748 -2.3007 -7.5634 15 6 1.1811 -1.0737 -8.3447 16 1 0.8421 -0.1891 -7.8259 17 6 1.2526 -1.0806 -9.7214 18 7 1.6649 -2.1580 -10.3531 19 14 0.7639 0.4402 -10.6898 20 1 1.9531 1.3091 -10.8802 21 1 0.2309 0.0334 -12.0147 22 1 -0.2806 1.1873 -9.9442 23 6 0.2000 -2.3102 -5.4724 24 6 0.0416 -2.0659 -4.1224 25 1 -0.3634 -1.0274 0.0194 26 1 -0.3633 0.5305 0.8802 27 1 -0.3634 0.4970 -0.8995 28 1 4.0685 -0.6590 0.7354 29 1 3.4584 -2.1909 1.4399 30 1 2.3538 -2.8220 -0.6101 31 1 3.8331 -2.0224 -1.2377 32 1 0.0935 -1.4877 -1.5848 33 1 3.1246 -0.8505 -3.4391 34 1 3.3982 -1.2980 -5.8437 35 1 2.6166 -2.5452 -7.7715 36 1 0.9401 -3.1371 -7.8563 37 1 1.7156 -2.1627 -11.3218 38 1 -0.6190 -2.7176 -6.0466 39 1 -0.9007 -2.2817 -3.6410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903297661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:08 Heat of formation + Delta-G solvation = -22.083664 kcal Electronic energy + Delta-G solvation = -19047.119380 eV Core-core repulsion = 16147.225611 eV Total energy + Delta-G solvation = -2899.893769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.20281 -38.56089 -35.47733 -33.12504 -31.81557 -31.43719 -30.18197 -29.29403 -26.37947 -25.69465 -22.91255 -22.39269 -22.26221 -20.61956 -19.64372 -17.65887 -16.38635 -16.23428 -15.93626 -15.83235 -15.09522 -14.65426 -14.10849 -13.93663 -13.43932 -13.16378 -12.90215 -12.74222 -12.60124 -12.48180 -12.35678 -11.85131 -11.43565 -11.41865 -11.19108 -11.10248 -11.01991 -10.63349 -10.51794 -10.08743 -10.06156 -9.74584 -9.40817 -9.01724 -8.37325 -8.24248 -6.78545 -5.97410 -4.01959 2.11749 2.35083 3.32916 3.39063 3.43505 3.48682 3.62840 4.34712 4.45194 4.50773 4.68448 4.73952 4.87433 4.95625 5.11556 5.25636 5.35206 5.36041 5.49124 5.54459 5.57190 5.63245 5.70568 5.85066 5.88197 6.05699 6.13584 6.32251 6.44137 6.63026 6.71222 6.84684 7.29961 7.30702 7.42549 7.61606 7.82585 7.97956 7.98034 8.03269 8.41240 9.03940 9.61588 11.11020 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038327 B = 0.003697 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.388232 B = 7572.655259 C = 7711.015336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 H 0.076 0.924 4 O -0.375 6.375 5 C 0.046 3.954 6 C -0.172 4.172 7 C 0.128 3.872 8 H 0.093 0.907 9 N -0.748 5.748 10 C 0.179 3.821 11 C -0.195 4.195 12 C -0.081 4.081 13 C -0.083 4.083 14 C 0.053 3.947 15 C -0.508 4.508 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.080 4.080 24 C -0.192 4.192 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.397 0.603 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.116 0.884 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 1.966 20.728 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 H 0.094 0.906 4 O -0.295 6.295 5 C -0.031 4.031 6 C -0.212 4.212 7 C 0.021 3.979 8 H 0.111 0.889 9 N -0.383 5.383 10 C 0.081 3.919 11 C -0.217 4.217 12 C -0.100 4.100 13 C -0.085 4.085 14 C 0.016 3.984 15 C -0.547 4.547 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.098 4.098 24 C -0.214 4.214 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.235 0.765 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.953 1.969 20.801 20.915 hybrid contribution -0.382 0.747 -0.694 1.089 sum 0.571 2.716 20.107 20.297 Atomic orbital electron populations 1.21861 0.93647 1.02598 1.02849 1.22950 0.95718 0.95768 0.84847 0.90640 1.88902 1.39885 1.67743 1.32922 1.23519 0.87583 0.96402 0.95555 1.23692 1.01229 1.00048 0.96184 1.22115 0.88961 0.94424 0.92442 0.88894 1.44684 1.14603 1.73268 1.05787 1.17617 0.94319 0.96731 0.83278 1.20524 0.96406 1.09160 0.95602 1.20850 0.98982 0.97576 0.92552 1.20469 0.92516 0.97255 0.98212 1.18250 0.97777 0.97179 0.85219 1.21130 1.43882 0.98754 0.90907 0.92566 1.25017 0.95430 0.96152 0.97840 1.69962 1.47398 1.27754 1.08429 0.86571 0.78816 0.83188 0.79332 1.20662 1.21227 1.19853 1.20838 0.97384 0.98608 0.92996 1.20454 0.97677 1.08397 0.94886 0.91849 0.91745 0.90417 0.92032 0.88951 0.89910 0.89844 0.76519 0.87422 0.86661 0.95700 0.95680 0.92956 0.86564 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.27 37.16 0.31 -1.04 16 2 C 0.07 0.64 4.06 -26.16 -0.11 0.53 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 O -0.38 -4.05 11.19 -35.23 -0.39 -4.45 16 5 C 0.05 0.40 7.72 38.21 0.29 0.69 16 6 C -0.17 -1.66 6.88 -24.72 -0.17 -1.83 16 7 C 0.13 1.35 3.10 -66.40 -0.21 1.14 16 8 H 0.09 1.00 6.39 -51.93 -0.33 0.67 16 9 N -0.75 -9.11 4.68 -50.69 -0.24 -9.35 16 10 C 0.18 2.82 6.65 -83.79 -0.56 2.26 16 11 C -0.19 -3.26 9.22 -39.38 -0.36 -3.62 16 12 C -0.08 -1.60 9.69 -39.62 -0.38 -1.98 16 13 C -0.08 -1.83 5.07 -104.59 -0.53 -2.36 16 14 C 0.05 1.38 5.10 -29.04 -0.15 1.23 16 15 C -0.51 -14.44 9.09 -34.44 -0.31 -14.75 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.08 -1.57 9.69 -39.61 -0.38 -1.96 16 24 C -0.19 -3.23 9.90 -39.38 -0.39 -3.61 16 25 H 0.06 0.55 6.81 -51.93 -0.35 0.20 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.40 4.34 5.94 -40.82 -0.24 4.09 16 33 H 0.11 1.54 6.20 -52.48 -0.33 1.22 16 34 H 0.12 2.22 8.06 -52.48 -0.42 1.79 16 35 H 0.02 0.68 8.08 -51.92 -0.42 0.26 16 36 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -30.69 318.26 -9.01 -39.70 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.84 Total: 2.38 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -3.05 Total: -23.77 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.50 Total: -35.37 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.39 Total: -4.45 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.69 -9.01 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.616 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds