Wall clock time and date at job start Mon Mar 30 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.99093 * 2 1 4 4 O 1.43736 * 109.87778 * 121.09018 * 2 1 3 5 5 C 1.44385 * 106.97237 * 145.93752 * 4 2 1 6 6 C 1.54993 * 103.48922 * 319.93526 * 5 4 2 7 7 C 1.54102 * 109.87376 * 238.92274 * 2 1 3 8 8 H 1.09003 * 110.48823 * 119.73797 * 7 2 1 9 9 N 1.46499 * 110.49050 * 357.22074 * 7 2 1 10 10 C 1.39671 * 119.99620 * 155.28166 * 9 7 2 11 11 C 1.38912 * 120.08022 * 359.44118 * 10 9 7 12 12 C 1.38098 * 119.92495 * 179.77180 * 11 10 9 13 13 C 1.38285 * 120.08000 * 0.51307 * 12 11 10 14 14 C 1.50689 * 119.92991 * 179.71972 * 13 12 11 15 15 C 1.50701 * 109.47698 * 270.02322 * 14 13 12 16 16 H 1.08003 * 119.99286 * 359.97438 * 15 14 13 17 17 C 1.37865 * 120.00250 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00295 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99995 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46910 * 89.99965 * 19 17 15 21 21 H 1.48493 * 109.47368 * 209.99862 * 19 17 15 22 22 H 1.48496 * 109.47009 * 330.00298 * 19 17 15 23 23 C 1.38293 * 120.14390 * 359.74118 * 13 12 11 24 24 C 1.38103 * 120.07544 * 0.02562 * 23 13 12 25 25 H 1.08997 * 109.47345 * 181.08060 * 1 2 3 26 26 H 1.08999 * 109.46974 * 301.07899 * 1 2 3 27 27 H 1.09003 * 109.47268 * 61.07759 * 1 2 3 28 28 H 1.08994 * 110.62122 * 78.44218 * 5 4 2 29 29 H 1.09009 * 110.61418 * 201.43442 * 5 4 2 30 30 H 1.08999 * 110.90767 * 278.82509 * 6 5 4 31 31 H 1.09006 * 110.90032 * 155.22714 * 6 5 4 32 32 H 0.97001 * 119.99790 * 334.99735 * 9 7 2 33 33 H 1.08005 * 120.03088 * 0.02562 * 11 10 9 34 34 H 1.08005 * 119.96252 * 180.25688 * 12 11 10 35 35 H 1.09007 * 109.47274 * 30.02491 * 14 13 12 36 36 H 1.09003 * 109.47687 * 150.01881 * 14 13 12 37 37 H 0.97001 * 119.99940 * 180.02562 * 18 17 15 38 38 H 1.08001 * 119.95818 * 180.02562 * 23 13 12 39 39 H 1.07999 * 120.03416 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6980 1.1576 5 6 3.2379 -1.3642 0.7645 6 6 2.9194 -1.8914 -0.6578 7 6 2.0539 -0.7481 -1.2412 8 1 2.6599 -0.0851 -1.8587 9 7 0.9391 -1.2946 -2.0190 10 6 1.0960 -1.5429 -3.3845 11 6 2.3044 -1.2615 -4.0091 12 6 2.4575 -1.5127 -5.3584 13 6 1.4061 -2.0339 -6.0900 14 6 1.5748 -2.3007 -7.5634 15 6 1.1811 -1.0737 -8.3447 16 1 0.8421 -0.1891 -7.8259 17 6 1.2526 -1.0806 -9.7214 18 7 1.6649 -2.1580 -10.3531 19 14 0.7639 0.4402 -10.6898 20 1 1.9531 1.3091 -10.8802 21 1 0.2309 0.0334 -12.0147 22 1 -0.2806 1.1873 -9.9442 23 6 0.2000 -2.3102 -5.4724 24 6 0.0416 -2.0659 -4.1224 25 1 -0.3634 -1.0274 0.0194 26 1 -0.3633 0.5305 0.8802 27 1 -0.3634 0.4970 -0.8995 28 1 4.0685 -0.6590 0.7354 29 1 3.4584 -2.1909 1.4399 30 1 2.3538 -2.8220 -0.6101 31 1 3.8331 -2.0224 -1.2377 32 1 0.0935 -1.4877 -1.5848 33 1 3.1246 -0.8505 -3.4391 34 1 3.3982 -1.2980 -5.8437 35 1 2.6166 -2.5452 -7.7715 36 1 0.9401 -3.1371 -7.8563 37 1 1.7156 -2.1627 -11.3218 38 1 -0.6190 -2.7176 -6.0466 39 1 -0.9007 -2.2817 -3.6410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903297661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:07 Heat of formation + Delta-G solvation = -39.912948 kcal Electronic energy + Delta-G solvation = -19047.892516 eV Core-core repulsion = 16147.225611 eV Total energy + Delta-G solvation = -2900.666905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09856 -39.85437 -36.70696 -35.05261 -32.90894 -32.47343 -31.59633 -30.74038 -27.86229 -26.73024 -24.77209 -23.58617 -23.10602 -21.97169 -20.78511 -18.72843 -18.45401 -17.32096 -16.87499 -16.72432 -16.58950 -15.95150 -15.59711 -15.17572 -14.69237 -14.50013 -14.18216 -14.10970 -13.79902 -13.50343 -13.31763 -13.20811 -13.05918 -12.96500 -12.55306 -12.38875 -12.16565 -12.03257 -11.84860 -11.59703 -11.51760 -11.34560 -10.82072 -10.57816 -10.47450 -9.68258 -8.30571 -7.96629 -6.29917 0.67461 0.88156 1.40266 1.41465 1.53102 2.41853 2.48259 2.88765 3.13170 3.14662 3.62027 3.76876 3.94597 4.11518 4.20292 4.23963 4.27479 4.39115 4.49976 4.56303 4.68776 4.75185 4.78147 4.86003 4.87262 5.01223 5.04994 5.13405 5.20256 5.22670 5.37910 5.40245 5.55508 5.70544 5.81557 5.92293 6.03301 6.23759 6.25184 6.56854 6.83628 6.90719 7.38575 8.92396 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038327 B = 0.003697 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.388232 B = 7572.655259 C = 7711.015336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 H 0.086 0.914 4 O -0.392 6.392 5 C 0.047 3.953 6 C -0.170 4.170 7 C 0.122 3.878 8 H 0.096 0.904 9 N -0.734 5.734 10 C 0.199 3.801 11 C -0.191 4.191 12 C -0.090 4.090 13 C -0.123 4.123 14 C 0.063 3.937 15 C -0.526 4.526 16 H 0.053 0.947 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.965 3.035 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.266 1.266 23 C -0.090 4.090 24 C -0.190 4.190 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.406 0.594 33 H 0.136 0.864 34 H 0.109 0.891 35 H -0.003 1.003 36 H -0.003 1.003 37 H 0.265 0.735 38 H 0.110 0.890 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 3.516 22.952 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 H 0.104 0.896 4 O -0.312 6.312 5 C -0.030 4.030 6 C -0.209 4.209 7 C 0.015 3.985 8 H 0.113 0.887 9 N -0.369 5.369 10 C 0.097 3.903 11 C -0.213 4.213 12 C -0.108 4.108 13 C -0.124 4.124 14 C 0.026 3.974 15 C -0.564 4.564 16 H 0.071 0.929 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.190 1.190 23 C -0.108 4.108 24 C -0.212 4.212 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.246 0.754 33 H 0.154 0.846 34 H 0.128 0.872 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.667 3.523 23.077 23.354 hybrid contribution -0.275 0.237 -1.216 1.269 sum 0.391 3.760 21.862 22.186 Atomic orbital electron populations 1.21860 0.93150 1.02721 1.03217 1.22994 0.96189 0.95974 0.84015 0.89621 1.88892 1.40797 1.68068 1.33448 1.23650 0.87308 0.97038 0.94984 1.23646 1.01100 0.99143 0.97005 1.22304 0.88536 0.94961 0.92706 0.88653 1.44746 1.15693 1.72075 1.04374 1.17670 0.93423 0.94537 0.84689 1.20691 0.97729 1.08563 0.94353 1.20839 0.98139 0.97901 0.93953 1.20145 0.94818 1.01352 0.96117 1.17986 0.95190 0.95610 0.88645 1.21454 1.43923 0.99323 0.91677 0.92882 1.25950 0.95204 0.99487 0.98952 1.70092 1.48347 1.29982 1.08879 0.85448 0.78798 0.79101 0.77720 1.19659 1.20497 1.19035 1.20827 0.96379 0.99105 0.94517 1.20648 0.99275 1.07692 0.93606 0.91819 0.91145 0.90332 0.90559 0.87766 0.90877 0.89232 0.75439 0.84612 0.87247 0.98441 0.98475 0.92668 0.87221 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.27 71.98 0.60 -1.64 16 2 C 0.07 1.08 4.06 30.97 0.13 1.21 16 3 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 4 O -0.39 -7.32 11.19 -148.98 -1.67 -8.99 16 5 C 0.05 0.66 7.72 72.66 0.56 1.22 16 6 C -0.17 -2.76 6.88 31.89 0.22 -2.54 16 7 C 0.12 2.17 3.10 45.98 0.14 2.31 16 8 H 0.10 1.71 6.39 -2.39 -0.02 1.70 16 9 N -0.73 -15.52 4.68 -314.28 -1.47 -16.99 16 10 C 0.20 5.74 6.65 38.22 0.25 6.00 16 11 C -0.19 -6.04 9.22 22.40 0.21 -5.83 16 12 C -0.09 -3.57 9.69 22.25 0.22 -3.35 16 13 C -0.12 -5.60 5.07 -19.84 -0.10 -5.70 16 14 C 0.06 3.49 5.10 29.10 0.15 3.63 16 15 C -0.53 -30.92 9.09 25.60 0.23 -30.68 16 16 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 17 C 0.00 0.10 5.46 84.65 0.46 0.56 16 18 N -0.93 -57.44 13.29 21.44 0.28 -57.16 16 19 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C -0.09 -3.59 9.69 22.25 0.22 -3.37 16 24 C -0.19 -6.04 9.90 22.40 0.22 -5.82 16 25 H 0.06 0.93 6.81 -2.39 -0.02 0.91 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 1.15 7.85 -2.39 -0.02 1.13 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 31 H 0.09 1.36 8.14 -2.38 -0.02 1.35 16 32 H 0.41 7.46 5.94 -92.71 -0.55 6.91 16 33 H 0.14 3.48 6.20 -2.91 -0.02 3.46 16 34 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.00 -0.16 8.08 -2.38 -0.02 -0.18 16 36 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 37 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 39 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -67.64 318.26 3.16 -64.49 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.48 Total: 15.58 kcal Atomic # 6 Polarization: -47.53 SS G_CDS: 3.50 Total: -44.03 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.19 Total: -74.15 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -1.67 Total: -8.99 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -67.64 3.16 -64.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.575 kcal (2) G-P(sol) polarization free energy of solvation -67.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds