Wall clock time and date at job start Mon Mar 30 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.42033 * 2 1 4 4 O 1.44426 * 110.37466 * 237.69230 * 2 1 3 5 5 C 1.44422 * 105.27439 * 200.65715 * 4 2 1 6 6 C 1.54480 * 104.80651 * 40.51067 * 5 4 2 7 7 C 1.54483 * 110.37325 * 122.31009 * 2 1 3 8 8 H 1.09003 * 110.50801 * 261.45643 * 7 2 1 9 9 N 1.46502 * 110.50985 * 24.16431 * 7 2 1 10 10 C 1.39672 * 119.99880 * 205.00151 * 9 7 2 11 11 C 1.38905 * 120.07417 * 359.72045 * 10 9 7 12 12 C 1.38110 * 119.92631 * 179.77083 * 11 10 9 13 13 C 1.38291 * 120.06697 * 0.50933 * 12 11 10 14 14 C 1.50703 * 119.92062 * 179.76360 * 13 12 11 15 15 C 1.50692 * 109.47479 * 269.98200 * 14 13 12 16 16 H 1.08004 * 120.00357 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00348 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00446 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46646 * 60.00075 * 19 17 15 21 21 H 1.48494 * 109.47214 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46979 * 300.00366 * 19 17 15 23 23 C 1.38280 * 120.15429 * 359.74838 * 13 12 11 24 24 C 1.38104 * 120.07138 * 359.97438 * 23 13 12 25 25 H 1.09000 * 109.47202 * 180.85654 * 1 2 3 26 26 H 1.09003 * 109.47001 * 300.85843 * 1 2 3 27 27 H 1.08996 * 109.47151 * 60.85282 * 1 2 3 28 28 H 1.09008 * 110.37162 * 159.34384 * 5 4 2 29 29 H 1.08998 * 110.37176 * 281.67544 * 5 4 2 30 30 H 1.09002 * 110.51115 * 94.66169 * 6 5 4 31 31 H 1.08996 * 110.50711 * 217.23787 * 6 5 4 32 32 H 0.97006 * 119.99654 * 25.00082 * 9 7 2 33 33 H 1.08006 * 120.04081 * 0.02562 * 11 10 9 34 34 H 1.07990 * 119.96639 * 180.25521 * 12 11 10 35 35 H 1.09001 * 109.46814 * 29.98387 * 14 13 12 36 36 H 1.09002 * 109.46999 * 149.97982 * 14 13 12 37 37 H 0.96998 * 120.00826 * 179.97438 * 18 17 15 38 38 H 1.08001 * 119.96284 * 180.02562 * 23 13 12 39 39 H 1.08005 * 120.03530 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7236 -1.1443 5 6 3.3873 -1.0871 -0.7995 6 6 3.3178 -1.5056 0.6859 7 6 2.0678 -0.7741 1.2240 8 1 2.3429 -0.0839 2.0215 9 7 1.0729 -1.7389 1.6988 10 6 1.0884 -2.1600 3.0304 11 6 2.0501 -1.6693 3.9045 12 6 2.0597 -2.0841 5.2218 13 6 1.1198 -2.9949 5.6682 14 6 1.1367 -3.4493 7.1050 15 6 2.0117 -4.6692 7.2359 16 1 2.5059 -5.0752 6.3657 17 6 2.1806 -5.2677 8.4665 18 7 1.5776 -4.7742 9.5260 19 14 3.2647 -6.7802 8.6287 20 1 4.6467 -6.4470 8.1991 21 1 3.2814 -7.2278 10.0444 22 1 2.7285 -7.8678 7.7713 23 6 0.1644 -3.4895 4.7995 24 6 0.1456 -3.0745 3.4824 25 1 -0.3633 -1.0275 0.0154 26 1 -0.3633 0.5271 0.8822 27 1 -0.3633 0.5005 -0.8975 28 1 3.7242 -1.9222 -1.4137 29 1 4.0525 -0.2323 -0.9221 30 1 3.1955 -2.5853 0.7732 31 1 4.2120 -1.1793 1.2169 32 1 0.4033 -2.0854 1.0883 33 1 2.7870 -0.9610 3.5554 34 1 2.8045 -1.6999 5.9028 35 1 1.5301 -2.6508 7.7340 36 1 0.1224 -3.6942 7.4206 37 1 1.6961 -5.1954 10.3917 38 1 -0.5685 -4.2004 5.1516 39 1 -0.6011 -3.4608 2.8045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903297662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:10 Heat of formation + Delta-G solvation = -24.010418 kcal Electronic energy + Delta-G solvation = -19071.424720 eV Core-core repulsion = 16171.447400 eV Total energy + Delta-G solvation = -2899.977319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15970 -38.53275 -35.36256 -33.08914 -31.81071 -31.43475 -30.16922 -29.35536 -26.40393 -25.61194 -22.89085 -22.34504 -22.20248 -20.62138 -19.71829 -17.61813 -16.35314 -16.23133 -15.79511 -15.71415 -15.23747 -14.72060 -14.12394 -13.98426 -13.30175 -13.24827 -12.81029 -12.69894 -12.57084 -12.50184 -12.25484 -11.86458 -11.45440 -11.25635 -11.20051 -11.11117 -11.05915 -10.61340 -10.52553 -10.11415 -10.06739 -9.73791 -9.40696 -9.01845 -8.36385 -8.22894 -6.76615 -5.96603 -4.01217 2.13021 2.36656 3.35028 3.38904 3.42390 3.55165 3.62973 4.39865 4.45238 4.47799 4.70530 4.77029 4.87532 4.96689 5.15329 5.24958 5.35578 5.36223 5.54923 5.55852 5.58625 5.63794 5.66399 5.89483 5.92713 6.06825 6.15189 6.33527 6.43883 6.60133 6.72518 6.86467 7.31235 7.31859 7.44708 7.62499 7.85056 7.98636 7.99076 8.05845 8.42085 9.04426 9.62183 11.11766 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.035925 B = 0.003838 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.205935 B = 7293.880338 C = 7671.822055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.077 0.923 4 O -0.373 6.373 5 C 0.046 3.954 6 C -0.175 4.175 7 C 0.129 3.871 8 H 0.093 0.907 9 N -0.745 5.745 10 C 0.181 3.819 11 C -0.195 4.195 12 C -0.081 4.081 13 C -0.084 4.084 14 C 0.053 3.947 15 C -0.509 4.509 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.080 4.080 24 C -0.192 4.192 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.396 0.604 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.116 0.884 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.447 9.788 -18.666 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.004 3.996 3 H 0.095 0.905 4 O -0.293 6.293 5 C -0.031 4.031 6 C -0.214 4.214 7 C 0.022 3.978 8 H 0.111 0.889 9 N -0.380 5.380 10 C 0.082 3.918 11 C -0.217 4.217 12 C -0.099 4.099 13 C -0.085 4.085 14 C 0.016 3.984 15 C -0.547 4.547 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.098 4.098 24 C -0.214 4.214 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.233 0.767 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.441 9.831 -18.672 21.107 hybrid contribution 0.637 -1.029 0.126 1.216 sum 1.078 8.802 -18.547 20.558 Atomic orbital electron populations 1.21711 0.92831 1.02881 1.02539 1.23276 0.95984 0.95384 0.84939 0.90498 1.89150 1.27352 1.74582 1.38187 1.23383 0.84455 0.99788 0.95472 1.23555 0.99100 1.02877 0.95904 1.22077 0.88440 0.91047 0.96269 0.88894 1.44568 1.35748 1.49389 1.08256 1.17608 0.95312 0.94973 0.83924 1.20517 1.01266 1.05676 0.94273 1.20848 0.97963 0.96824 0.94313 1.20466 0.93940 0.95189 0.98929 1.18243 0.97715 0.96188 0.86227 1.21095 1.28512 1.11289 0.93844 0.92636 1.25014 0.96036 0.97454 0.95891 1.69948 1.43427 1.40800 0.99393 0.86634 0.81089 0.83266 0.76901 1.20245 1.21291 1.20225 1.20833 0.98457 0.98358 0.92171 1.20456 1.01429 1.02735 0.96825 0.91723 0.90680 0.91911 0.89157 0.92305 0.89723 0.90138 0.76716 0.87439 0.86685 0.95709 0.95692 0.92897 0.86588 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.01 37.16 0.33 -0.90 16 2 C 0.06 0.59 3.88 -25.95 -0.10 0.49 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 O -0.37 -4.09 11.34 -35.23 -0.40 -4.49 16 5 C 0.05 0.41 7.63 37.93 0.29 0.70 16 6 C -0.17 -1.74 6.88 -25.16 -0.17 -1.92 16 7 C 0.13 1.36 3.04 -66.36 -0.20 1.16 16 8 H 0.09 0.97 6.41 -51.93 -0.33 0.64 16 9 N -0.75 -9.22 4.59 -50.65 -0.23 -9.45 16 10 C 0.18 2.86 6.65 -83.79 -0.56 2.30 16 11 C -0.20 -3.28 9.22 -39.38 -0.36 -3.64 16 12 C -0.08 -1.60 9.69 -39.61 -0.38 -1.98 16 13 C -0.08 -1.85 5.07 -104.59 -0.53 -2.38 16 14 C 0.05 1.39 5.10 -29.04 -0.15 1.25 16 15 C -0.51 -14.51 9.09 -34.45 -0.31 -14.82 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.08 -1.58 9.69 -39.62 -0.38 -1.97 16 24 C -0.19 -3.26 9.90 -39.38 -0.39 -3.65 16 25 H 0.06 0.58 6.10 -51.93 -0.32 0.27 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.99 7.96 -51.93 -0.41 0.57 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.40 4.53 6.49 -40.82 -0.27 4.27 16 33 H 0.11 1.55 6.21 -52.48 -0.33 1.22 16 34 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 318.80 15.07 4.80 4.80 Total: -1.00 -30.72 318.80 -8.97 -39.69 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.84 Total: 2.57 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -3.02 Total: -23.82 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.50 Total: -35.54 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.40 Total: -4.49 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.72 -8.97 -39.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.676 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds