Wall clock time and date at job start Mon Mar 30 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.42033 * 2 1 4 4 O 1.44426 * 110.37466 * 237.69230 * 2 1 3 5 5 C 1.44422 * 105.27439 * 200.65715 * 4 2 1 6 6 C 1.54480 * 104.80651 * 40.51067 * 5 4 2 7 7 C 1.54483 * 110.37325 * 122.31009 * 2 1 3 8 8 H 1.09003 * 110.50801 * 261.45643 * 7 2 1 9 9 N 1.46502 * 110.50985 * 24.16431 * 7 2 1 10 10 C 1.39672 * 119.99880 * 205.00151 * 9 7 2 11 11 C 1.38905 * 120.07417 * 359.72045 * 10 9 7 12 12 C 1.38110 * 119.92631 * 179.77083 * 11 10 9 13 13 C 1.38291 * 120.06697 * 0.50933 * 12 11 10 14 14 C 1.50703 * 119.92062 * 179.76360 * 13 12 11 15 15 C 1.50692 * 109.47479 * 269.98200 * 14 13 12 16 16 H 1.08004 * 120.00357 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00348 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00446 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46646 * 60.00075 * 19 17 15 21 21 H 1.48494 * 109.47214 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46979 * 300.00366 * 19 17 15 23 23 C 1.38280 * 120.15429 * 359.74838 * 13 12 11 24 24 C 1.38104 * 120.07138 * 359.97438 * 23 13 12 25 25 H 1.09000 * 109.47202 * 180.85654 * 1 2 3 26 26 H 1.09003 * 109.47001 * 300.85843 * 1 2 3 27 27 H 1.08996 * 109.47151 * 60.85282 * 1 2 3 28 28 H 1.09008 * 110.37162 * 159.34384 * 5 4 2 29 29 H 1.08998 * 110.37176 * 281.67544 * 5 4 2 30 30 H 1.09002 * 110.51115 * 94.66169 * 6 5 4 31 31 H 1.08996 * 110.50711 * 217.23787 * 6 5 4 32 32 H 0.97006 * 119.99654 * 25.00082 * 9 7 2 33 33 H 1.08006 * 120.04081 * 0.02562 * 11 10 9 34 34 H 1.07990 * 119.96639 * 180.25521 * 12 11 10 35 35 H 1.09001 * 109.46814 * 29.98387 * 14 13 12 36 36 H 1.09002 * 109.46999 * 149.97982 * 14 13 12 37 37 H 0.96998 * 120.00826 * 179.97438 * 18 17 15 38 38 H 1.08001 * 119.96284 * 180.02562 * 23 13 12 39 39 H 1.08005 * 120.03530 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7236 -1.1443 5 6 3.3873 -1.0871 -0.7995 6 6 3.3178 -1.5056 0.6859 7 6 2.0678 -0.7741 1.2240 8 1 2.3429 -0.0839 2.0215 9 7 1.0729 -1.7389 1.6988 10 6 1.0884 -2.1600 3.0304 11 6 2.0501 -1.6693 3.9045 12 6 2.0597 -2.0841 5.2218 13 6 1.1198 -2.9949 5.6682 14 6 1.1367 -3.4493 7.1050 15 6 2.0117 -4.6692 7.2359 16 1 2.5059 -5.0752 6.3657 17 6 2.1806 -5.2677 8.4665 18 7 1.5776 -4.7742 9.5260 19 14 3.2647 -6.7802 8.6287 20 1 4.6467 -6.4470 8.1991 21 1 3.2814 -7.2278 10.0444 22 1 2.7285 -7.8678 7.7713 23 6 0.1644 -3.4895 4.7995 24 6 0.1456 -3.0745 3.4824 25 1 -0.3633 -1.0275 0.0154 26 1 -0.3633 0.5271 0.8822 27 1 -0.3633 0.5005 -0.8975 28 1 3.7242 -1.9222 -1.4137 29 1 4.0525 -0.2323 -0.9221 30 1 3.1955 -2.5853 0.7732 31 1 4.2120 -1.1793 1.2169 32 1 0.4033 -2.0854 1.0883 33 1 2.7870 -0.9610 3.5554 34 1 2.8045 -1.6999 5.9028 35 1 1.5301 -2.6508 7.7340 36 1 0.1224 -3.6942 7.4206 37 1 1.6961 -5.1954 10.3917 38 1 -0.5685 -4.2004 5.1516 39 1 -0.6011 -3.4608 2.8045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903297662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:09 Heat of formation + Delta-G solvation = -41.944445 kcal Electronic energy + Delta-G solvation = -19072.202398 eV Core-core repulsion = 16171.447400 eV Total energy + Delta-G solvation = -2900.754997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06231 -39.83338 -36.62046 -35.01884 -32.86914 -32.46907 -31.60325 -30.80407 -27.91218 -26.64939 -24.75801 -23.60888 -22.97968 -21.95703 -20.88245 -18.70813 -18.44906 -17.30740 -16.81013 -16.67098 -16.45034 -16.06171 -15.65843 -15.27161 -14.59545 -14.53430 -14.25657 -14.07253 -13.68739 -13.50449 -13.25603 -13.20659 -13.17131 -12.78807 -12.54046 -12.40522 -12.17017 -11.98431 -11.83461 -11.61679 -11.52614 -11.33164 -10.86257 -10.57482 -10.49887 -9.68013 -8.30270 -7.95884 -6.29936 0.67663 0.88746 1.39814 1.42752 1.51090 2.41674 2.51202 2.91309 3.13055 3.15073 3.68696 3.72299 3.99486 4.13295 4.20110 4.23872 4.28550 4.43622 4.49414 4.56940 4.69626 4.75602 4.78088 4.87302 4.89391 4.98300 5.07483 5.15154 5.20721 5.25583 5.38061 5.40637 5.55916 5.70541 5.81205 5.87414 6.05085 6.23997 6.25504 6.58633 6.83342 6.91605 7.38410 8.92243 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.035925 B = 0.003838 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.205935 B = 7293.880338 C = 7671.822055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 H 0.096 0.904 4 O -0.393 6.393 5 C 0.046 3.954 6 C -0.173 4.173 7 C 0.121 3.879 8 H 0.099 0.901 9 N -0.732 5.732 10 C 0.200 3.800 11 C -0.191 4.191 12 C -0.089 4.089 13 C -0.123 4.123 14 C 0.063 3.937 15 C -0.527 4.527 16 H 0.052 0.948 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.964 3.036 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 C -0.089 4.089 24 C -0.191 4.191 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.403 0.597 33 H 0.137 0.863 34 H 0.110 0.890 35 H -0.002 1.002 36 H -0.003 1.003 37 H 0.265 0.735 38 H 0.109 0.891 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 10.177 -21.233 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.007 3.993 3 H 0.113 0.887 4 O -0.312 6.312 5 C -0.030 4.030 6 C -0.213 4.213 7 C 0.015 3.985 8 H 0.117 0.883 9 N -0.366 5.366 10 C 0.098 3.902 11 C -0.213 4.213 12 C -0.108 4.108 13 C -0.125 4.125 14 C 0.026 3.974 15 C -0.565 4.565 16 H 0.070 0.930 17 C -0.195 4.195 18 N -0.573 5.573 19 Si 0.788 3.212 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.108 4.108 24 C -0.213 4.213 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.242 0.758 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.423 10.238 -21.289 23.666 hybrid contribution 0.307 -1.057 0.786 1.353 sum 1.730 9.181 -20.503 22.531 Atomic orbital electron populations 1.21725 0.92503 1.02701 1.03103 1.23356 0.96309 0.95848 0.83784 0.88671 1.89139 1.28344 1.74930 1.38814 1.23493 0.84042 1.00837 0.94667 1.23516 0.99191 1.01605 0.96938 1.22310 0.88272 0.90858 0.97082 0.88267 1.44645 1.36082 1.49010 1.06815 1.17658 0.93905 0.93411 0.85186 1.20684 1.01969 1.05751 0.92903 1.20841 0.97447 0.96679 0.95821 1.20143 0.96974 0.98320 0.97057 1.17979 0.95420 0.94889 0.89092 1.21426 1.28888 1.12211 0.93982 0.92953 1.25942 0.97408 1.00747 0.95416 1.70079 1.44813 1.42417 0.99959 0.85517 0.79256 0.79156 0.77230 1.19256 1.20506 1.19347 1.20815 0.97984 0.98625 0.93392 1.20640 1.02245 1.02640 0.95819 0.92217 0.90357 0.91194 0.88584 0.90414 0.91525 0.88946 0.75844 0.84550 0.87226 0.98398 0.98484 0.92643 0.87290 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.01 71.98 0.65 -1.42 16 2 C 0.06 1.00 3.88 31.10 0.12 1.12 16 3 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 4 O -0.39 -7.39 11.34 -148.98 -1.69 -9.08 16 5 C 0.05 0.68 7.63 72.49 0.55 1.23 16 6 C -0.17 -2.92 6.88 31.61 0.22 -2.70 16 7 C 0.12 2.15 3.04 46.01 0.14 2.29 16 8 H 0.10 1.69 6.41 -2.39 -0.02 1.67 16 9 N -0.73 -15.87 4.59 -314.17 -1.44 -17.32 16 10 C 0.20 5.86 6.65 38.21 0.25 6.12 16 11 C -0.19 -6.06 9.22 22.40 0.21 -5.85 16 12 C -0.09 -3.57 9.69 22.25 0.22 -3.35 16 13 C -0.12 -5.66 5.07 -19.84 -0.10 -5.76 16 14 C 0.06 3.53 5.10 29.10 0.15 3.67 16 15 C -0.53 -31.12 9.09 25.60 0.23 -30.89 16 16 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 19 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C -0.09 -3.62 9.69 22.25 0.22 -3.40 16 24 C -0.19 -6.18 9.90 22.40 0.22 -5.96 16 25 H 0.06 0.91 6.10 -2.39 -0.01 0.90 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.39 7.96 -2.39 -0.02 1.37 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.40 7.95 6.49 -92.70 -0.60 7.34 16 33 H 0.14 3.49 6.21 -2.91 -0.02 3.48 16 34 H 0.11 4.37 8.06 -2.92 -0.02 4.35 16 35 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 36 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 39 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -67.87 318.80 3.15 -64.72 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.43 Total: 16.00 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.54 Total: -44.29 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -1.16 Total: -74.59 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -1.69 Total: -9.08 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -67.87 3.15 -64.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.774 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds