Wall clock time and date at job start Mon Mar 30 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.89433 * 2 1 4 4 O 1.43242 * 109.82883 * 239.06692 * 2 1 3 5 5 C 1.43643 * 109.97099 * 242.19640 * 4 2 1 6 6 C 1.54948 * 105.14085 * 335.57626 * 5 4 2 7 7 C 1.54384 * 109.82935 * 120.93685 * 2 1 3 8 8 H 1.09001 * 111.02172 * 22.59820 * 7 2 1 9 9 N 1.46503 * 110.84820 * 259.05839 * 7 2 1 10 10 C 1.39666 * 120.00126 * 160.71420 * 9 7 2 11 11 C 1.38912 * 120.07669 * 359.72242 * 10 9 7 12 12 C 1.38103 * 119.93079 * 180.27360 * 11 10 9 13 13 C 1.38290 * 120.06941 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.92400 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46875 * 270.02345 * 14 13 12 16 16 H 1.07996 * 120.00361 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99624 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99747 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00005 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46791 * 90.00034 * 19 17 15 21 21 H 1.48500 * 109.46856 * 209.99992 * 19 17 15 22 22 H 1.48500 * 109.47279 * 330.00349 * 19 17 15 23 23 C 1.38284 * 120.15391 * 359.97438 * 13 12 11 24 24 C 1.38105 * 120.07205 * 0.02562 * 23 13 12 25 25 H 1.09001 * 109.47572 * 299.06261 * 1 2 3 26 26 H 1.09000 * 109.47246 * 59.06974 * 1 2 3 27 27 H 1.09003 * 109.47371 * 179.06591 * 1 2 3 28 28 H 1.09001 * 110.31208 * 216.66101 * 5 4 2 29 29 H 1.09001 * 110.39187 * 94.53470 * 5 4 2 30 30 H 1.08996 * 111.12138 * 278.52886 * 6 5 4 31 31 H 1.08999 * 111.16277 * 154.37746 * 6 5 4 32 32 H 0.97002 * 119.99239 * 340.72116 * 9 7 2 33 33 H 1.08007 * 120.03639 * 0.30326 * 11 10 9 34 34 H 1.07993 * 119.96648 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.46718 * 30.02042 * 14 13 12 36 36 H 1.08999 * 109.46759 * 150.01571 * 14 13 12 37 37 H 0.96998 * 119.99936 * 179.97438 * 18 17 15 38 38 H 1.07993 * 119.96759 * 179.97438 * 23 13 12 39 39 H 1.08002 * 120.03661 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0159 -0.6927 -1.1558 5 6 2.7747 -1.8444 -0.7546 6 6 3.2730 -1.5223 0.6767 7 6 2.0537 -0.7466 1.2457 8 1 1.3027 -1.4349 1.6335 9 7 2.4750 0.1995 2.2818 10 6 2.5962 -0.2244 3.6071 11 6 2.3122 -1.5414 3.9455 12 6 2.4276 -1.9559 5.2577 13 6 2.8250 -1.0613 6.2346 14 6 2.9493 -1.5170 7.6657 15 6 1.6334 -1.3176 8.3724 16 1 0.7914 -0.9021 7.8389 17 6 1.5047 -1.6648 9.7006 18 7 0.3564 -1.4903 10.3175 19 14 2.9613 -2.3829 10.6237 20 1 3.7448 -1.2843 11.2436 21 1 2.4719 -3.3011 11.6833 22 1 3.8251 -3.1342 9.6778 23 6 3.1086 0.2505 5.9013 24 6 2.9952 0.6715 4.5909 25 1 -0.3634 0.4992 0.8983 26 1 -0.3634 0.5282 -0.8815 27 1 -0.3634 -1.0275 -0.0168 28 1 3.6210 -1.9924 -1.4254 29 1 2.1414 -2.7316 -0.7440 30 1 4.1619 -0.8921 0.6506 31 1 3.4576 -2.4346 1.2438 32 1 2.6696 1.1205 2.0474 33 1 2.0018 -2.2406 3.1830 34 1 2.2073 -2.9797 5.5214 35 1 3.2177 -2.5733 7.6885 36 1 3.7228 -0.9348 8.1664 37 1 0.2657 -1.7349 11.2518 38 1 3.4183 0.9466 6.6666 39 1 3.2172 1.6961 4.3311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903297664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:13 Heat of formation + Delta-G solvation = -26.939516 kcal Electronic energy + Delta-G solvation = -18987.098959 eV Core-core repulsion = 16086.994624 eV Total energy + Delta-G solvation = -2900.104335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15533 -38.68191 -35.51252 -33.05864 -31.82853 -31.53735 -30.29342 -29.86548 -26.88173 -25.36995 -22.67464 -22.60488 -21.82185 -20.81790 -19.96109 -17.55213 -16.74360 -16.71686 -16.06550 -15.38077 -14.76656 -14.48765 -14.16574 -14.07202 -13.80718 -13.28539 -13.10116 -12.87467 -12.71388 -12.43449 -12.24588 -12.12635 -11.76219 -11.55242 -11.52392 -11.18843 -11.04190 -10.62343 -10.25461 -10.16697 -9.92739 -9.84233 -9.44243 -9.12777 -8.54469 -8.32266 -6.84991 -6.03457 -4.01596 2.03679 2.25154 3.29350 3.30901 3.38533 3.41933 3.65472 4.28825 4.44958 4.45405 4.55116 4.71923 4.85108 4.92575 5.06101 5.28362 5.35203 5.35893 5.45540 5.48976 5.49442 5.64207 5.72042 5.80266 5.91806 5.94248 6.05935 6.20072 6.32590 6.59869 6.70368 6.74949 7.04347 7.07471 7.15258 7.34730 7.69588 7.71250 7.77338 7.93897 8.55898 9.03155 9.57656 11.09728 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.040076 B = 0.003701 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.512566 B = 7563.650882 C = 7678.150361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.073 3.927 3 H 0.082 0.918 4 O -0.378 6.378 5 C 0.050 3.950 6 C -0.175 4.175 7 C 0.130 3.870 8 H 0.095 0.905 9 N -0.744 5.744 10 C 0.184 3.816 11 C -0.193 4.193 12 C -0.078 4.078 13 C -0.078 4.078 14 C 0.019 3.981 15 C -0.510 4.510 16 H 0.073 0.927 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.077 4.077 24 C -0.190 4.190 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.395 0.605 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.118 0.882 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 1.429 -20.603 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 H 0.100 0.900 4 O -0.297 6.297 5 C -0.026 4.026 6 C -0.214 4.214 7 C 0.023 3.977 8 H 0.112 0.888 9 N -0.377 5.377 10 C 0.085 3.915 11 C -0.215 4.215 12 C -0.097 4.097 13 C -0.080 4.080 14 C -0.018 4.018 15 C -0.548 4.548 16 H 0.091 0.909 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.096 4.096 24 C -0.212 4.212 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.059 1.310 -20.724 21.373 hybrid contribution 0.693 -0.088 0.772 1.041 sum 5.752 1.222 -19.952 20.801 Atomic orbital electron populations 1.22128 0.94194 1.02909 1.02670 1.22855 0.94775 0.96338 0.84588 0.90047 1.88453 1.71018 1.40591 1.29620 1.23337 0.95111 0.88897 0.95292 1.23792 0.99578 1.02070 0.95957 1.22345 0.95611 0.91702 0.88035 0.88756 1.44266 1.77730 1.11673 1.04063 1.17582 0.97039 0.93338 0.83526 1.20517 1.09699 0.94373 0.96949 1.20820 0.97610 0.99603 0.91618 1.20069 0.98056 0.93136 0.96734 1.18713 0.97948 0.96314 0.88821 1.21014 0.96197 1.42217 0.95390 0.90901 1.25020 0.95676 0.95264 0.97449 1.69908 1.24335 1.48614 1.11287 0.86806 0.83314 0.79595 0.79795 1.20235 1.21350 1.18934 1.20811 0.98336 0.95744 0.94697 1.20456 1.09378 0.98432 0.92951 0.91026 0.91801 0.91984 0.89650 0.91987 0.89973 0.89505 0.77026 0.87270 0.86514 0.95764 0.96192 0.92708 0.86428 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.44 37.16 0.35 -1.10 16 2 C 0.07 0.70 3.91 -26.01 -0.10 0.60 16 3 H 0.08 0.73 7.68 -51.93 -0.40 0.34 16 4 O -0.38 -4.05 11.02 -35.23 -0.39 -4.44 16 5 C 0.05 0.43 7.78 38.19 0.30 0.73 16 6 C -0.17 -1.63 6.85 -24.48 -0.17 -1.79 16 7 C 0.13 1.34 2.44 -65.98 -0.16 1.18 16 8 H 0.09 1.04 6.39 -51.93 -0.33 0.71 16 9 N -0.74 -8.67 5.39 -50.29 -0.27 -8.94 16 10 C 0.18 2.80 6.65 -83.79 -0.56 2.24 16 11 C -0.19 -3.14 9.22 -39.38 -0.36 -3.50 16 12 C -0.08 -1.48 9.69 -39.61 -0.38 -1.87 16 13 C -0.08 -1.66 5.07 -104.58 -0.53 -2.19 16 14 C 0.02 0.46 4.17 -29.03 -0.12 0.34 16 15 C -0.51 -14.61 9.65 -34.44 -0.33 -14.95 16 16 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 19 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 23 C -0.08 -1.47 9.69 -39.61 -0.38 -1.85 16 24 C -0.19 -3.07 9.90 -39.38 -0.39 -3.46 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 3.96 8.32 -40.82 -0.34 3.62 16 33 H 0.11 1.53 6.31 -52.48 -0.33 1.19 16 34 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 35 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 36 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -31.33 319.33 -8.66 -39.99 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.98 Total: 2.58 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.94 Total: -23.77 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.50 Total: -36.03 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.39 Total: -4.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.33 -8.66 -39.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.049 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds