Wall clock time and date at job start Mon Mar 30 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.89433 * 2 1 4 4 O 1.43242 * 109.82883 * 239.06692 * 2 1 3 5 5 C 1.43643 * 109.97099 * 242.19640 * 4 2 1 6 6 C 1.54948 * 105.14085 * 335.57626 * 5 4 2 7 7 C 1.54384 * 109.82935 * 120.93685 * 2 1 3 8 8 H 1.09001 * 111.02172 * 22.59820 * 7 2 1 9 9 N 1.46503 * 110.84820 * 259.05839 * 7 2 1 10 10 C 1.39666 * 120.00126 * 160.71420 * 9 7 2 11 11 C 1.38912 * 120.07669 * 359.72242 * 10 9 7 12 12 C 1.38103 * 119.93079 * 180.27360 * 11 10 9 13 13 C 1.38290 * 120.06941 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.92400 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46875 * 270.02345 * 14 13 12 16 16 H 1.07996 * 120.00361 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99624 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99747 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00005 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46791 * 90.00034 * 19 17 15 21 21 H 1.48500 * 109.46856 * 209.99992 * 19 17 15 22 22 H 1.48500 * 109.47279 * 330.00349 * 19 17 15 23 23 C 1.38284 * 120.15391 * 359.97438 * 13 12 11 24 24 C 1.38105 * 120.07205 * 0.02562 * 23 13 12 25 25 H 1.09001 * 109.47572 * 299.06261 * 1 2 3 26 26 H 1.09000 * 109.47246 * 59.06974 * 1 2 3 27 27 H 1.09003 * 109.47371 * 179.06591 * 1 2 3 28 28 H 1.09001 * 110.31208 * 216.66101 * 5 4 2 29 29 H 1.09001 * 110.39187 * 94.53470 * 5 4 2 30 30 H 1.08996 * 111.12138 * 278.52886 * 6 5 4 31 31 H 1.08999 * 111.16277 * 154.37746 * 6 5 4 32 32 H 0.97002 * 119.99239 * 340.72116 * 9 7 2 33 33 H 1.08007 * 120.03639 * 0.30326 * 11 10 9 34 34 H 1.07993 * 119.96648 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.46718 * 30.02042 * 14 13 12 36 36 H 1.08999 * 109.46759 * 150.01571 * 14 13 12 37 37 H 0.96998 * 119.99936 * 179.97438 * 18 17 15 38 38 H 1.07993 * 119.96759 * 179.97438 * 23 13 12 39 39 H 1.08002 * 120.03661 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0159 -0.6927 -1.1558 5 6 2.7747 -1.8444 -0.7546 6 6 3.2730 -1.5223 0.6767 7 6 2.0537 -0.7466 1.2457 8 1 1.3027 -1.4349 1.6335 9 7 2.4750 0.1995 2.2818 10 6 2.5962 -0.2244 3.6071 11 6 2.3122 -1.5414 3.9455 12 6 2.4276 -1.9559 5.2577 13 6 2.8250 -1.0613 6.2346 14 6 2.9493 -1.5170 7.6657 15 6 1.6334 -1.3176 8.3724 16 1 0.7914 -0.9021 7.8389 17 6 1.5047 -1.6648 9.7006 18 7 0.3564 -1.4903 10.3175 19 14 2.9613 -2.3829 10.6237 20 1 3.7448 -1.2843 11.2436 21 1 2.4719 -3.3011 11.6833 22 1 3.8251 -3.1342 9.6778 23 6 3.1086 0.2505 5.9013 24 6 2.9952 0.6715 4.5909 25 1 -0.3634 0.4992 0.8983 26 1 -0.3634 0.5282 -0.8815 27 1 -0.3634 -1.0275 -0.0168 28 1 3.6210 -1.9924 -1.4254 29 1 2.1414 -2.7316 -0.7440 30 1 4.1619 -0.8921 0.6506 31 1 3.4576 -2.4346 1.2438 32 1 2.6696 1.1205 2.0474 33 1 2.0018 -2.2406 3.1830 34 1 2.2073 -2.9797 5.5214 35 1 3.2177 -2.5733 7.6885 36 1 3.7228 -0.9348 8.1664 37 1 0.2657 -1.7349 11.2518 38 1 3.4183 0.9466 6.6666 39 1 3.2172 1.6961 4.3311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903297664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:13 Heat of formation + Delta-G solvation = -46.371285 kcal Electronic energy + Delta-G solvation = -18987.941584 eV Core-core repulsion = 16086.994624 eV Total energy + Delta-G solvation = -2900.946959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03977 -39.91516 -36.72312 -34.97128 -33.07307 -32.42382 -31.69776 -31.19625 -28.35401 -26.37355 -24.35366 -23.80376 -22.70533 -21.86549 -21.35293 -18.92843 -18.56005 -17.65488 -17.01124 -16.66664 -16.16816 -15.75688 -15.41657 -15.12728 -14.85286 -14.73867 -14.32338 -14.22333 -14.11464 -13.59249 -13.41381 -13.37209 -13.11983 -12.95696 -12.42902 -12.35748 -12.25253 -11.90930 -11.83483 -11.71775 -11.58713 -11.46439 -10.76174 -10.62665 -10.51705 -9.69637 -8.28202 -8.10571 -6.31362 0.66032 0.85151 1.37481 1.39262 1.51707 2.35570 2.37602 2.86930 3.07086 3.10694 3.55897 3.70393 3.91087 4.10524 4.16787 4.20822 4.24291 4.34476 4.43943 4.60278 4.68373 4.69938 4.74902 4.83675 4.89883 4.95477 5.01614 5.10238 5.12609 5.18762 5.24368 5.33792 5.50712 5.61407 5.68562 5.97617 6.03293 6.15583 6.31379 6.52059 6.75531 6.88442 7.32078 8.89546 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.040076 B = 0.003701 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.512566 B = 7563.650882 C = 7678.150361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.076 3.924 3 H 0.090 0.910 4 O -0.394 6.394 5 C 0.049 3.951 6 C -0.170 4.170 7 C 0.126 3.874 8 H 0.090 0.910 9 N -0.731 5.731 10 C 0.200 3.800 11 C -0.194 4.194 12 C -0.089 4.089 13 C -0.121 4.121 14 C 0.027 3.973 15 C -0.517 4.517 16 H 0.026 0.974 17 C 0.005 3.995 18 N -0.952 5.952 19 Si 0.952 3.048 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.247 1.247 23 C -0.089 4.089 24 C -0.190 4.190 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.406 0.594 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.025 0.975 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.116 0.884 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.863 1.386 -22.474 23.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.107 0.893 4 O -0.313 6.313 5 C -0.027 4.027 6 C -0.209 4.209 7 C 0.019 3.981 8 H 0.108 0.892 9 N -0.363 5.363 10 C 0.099 3.901 11 C -0.216 4.216 12 C -0.108 4.108 13 C -0.123 4.123 14 C -0.011 4.011 15 C -0.555 4.555 16 H 0.044 0.956 17 C -0.192 4.192 18 N -0.593 5.593 19 Si 0.775 3.225 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.170 1.170 23 C -0.108 4.108 24 C -0.212 4.212 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.243 0.757 33 H 0.151 0.849 34 H 0.132 0.868 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.134 0.866 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.670 1.283 -22.652 23.649 hybrid contribution 0.103 -0.009 1.164 1.169 sum 6.773 1.274 -21.488 22.566 Atomic orbital electron populations 1.22118 0.93889 1.02932 1.02864 1.22850 0.94991 0.96523 0.83868 0.89257 1.88442 1.71383 1.41331 1.30155 1.23461 0.95599 0.88576 0.95048 1.23738 0.98876 1.01913 0.96372 1.22457 0.96135 0.91610 0.87865 0.89199 1.44278 1.76502 1.12605 1.02930 1.17643 0.94900 0.92746 0.84832 1.20691 1.09232 0.95425 0.96268 1.20884 0.97924 0.99345 0.92633 1.19935 1.01965 0.94806 0.95564 1.18545 0.95308 0.96440 0.90763 1.21266 0.96994 1.41518 0.95729 0.95595 1.26014 0.98952 0.95704 0.98502 1.70069 1.27005 1.50308 1.11901 0.85637 0.79380 0.79135 0.78391 1.19014 1.20860 1.16999 1.20891 0.98747 0.94940 0.96186 1.20681 1.08685 0.99979 0.91894 0.91142 0.91294 0.92097 0.88226 0.91118 0.90079 0.89269 0.75689 0.84897 0.86823 0.95644 0.95735 0.92462 0.86634 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.44 71.98 0.68 -1.87 16 2 C 0.08 1.26 3.91 31.06 0.12 1.38 16 3 H 0.09 1.35 7.68 -2.39 -0.02 1.33 16 4 O -0.39 -7.42 11.02 -148.98 -1.64 -9.06 16 5 C 0.05 0.72 7.78 72.65 0.56 1.28 16 6 C -0.17 -2.68 6.85 32.05 0.22 -2.46 16 7 C 0.13 2.24 2.44 46.25 0.11 2.36 16 8 H 0.09 1.74 6.39 -2.39 -0.02 1.72 16 9 N -0.73 -14.83 5.39 -313.01 -1.69 -16.52 16 10 C 0.20 5.63 6.65 38.22 0.25 5.88 16 11 C -0.19 -5.99 9.22 22.40 0.21 -5.79 16 12 C -0.09 -3.40 9.69 22.25 0.22 -3.18 16 13 C -0.12 -5.19 5.07 -19.84 -0.10 -5.29 16 14 C 0.03 1.31 4.17 29.10 0.12 1.43 16 15 C -0.52 -30.73 9.65 25.60 0.25 -30.49 16 16 H 0.03 1.72 7.98 -2.91 -0.02 1.70 16 17 C 0.00 0.28 5.47 84.66 0.46 0.74 16 18 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 19 Si 0.95 44.68 27.47 68.60 1.88 46.57 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 23 C -0.09 -3.37 9.69 22.25 0.22 -3.15 16 24 C -0.19 -5.80 9.90 22.40 0.22 -5.58 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.41 6.74 8.32 -92.71 -0.77 5.96 16 33 H 0.13 3.40 6.31 -2.91 -0.02 3.39 16 34 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 35 H 0.03 1.22 7.14 -2.39 -0.02 1.20 16 36 H 0.02 1.16 7.51 -2.39 -0.02 1.14 16 37 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 38 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 39 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -69.26 319.33 2.60 -66.66 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.21 Total: 17.45 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 3.54 Total: -44.72 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -1.39 Total: -76.89 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -1.64 Total: -9.06 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -69.26 2.60 -66.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.288 kcal (2) G-P(sol) polarization free energy of solvation -69.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds