Wall clock time and date at job start Mon Mar 30 2020 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30988 * 1 3 3 Si 1.86803 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47184 * 274.97967 * 3 2 1 5 5 H 1.48495 * 109.47084 * 34.98258 * 3 2 1 6 6 H 1.48503 * 109.46848 * 154.98370 * 3 2 1 7 7 C 1.39742 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99795 * 173.97915 * 7 2 1 9 9 C 1.41489 * 119.99777 * 354.26068 * 7 2 1 10 10 N 1.34846 * 126.02082 * 5.14985 * 9 7 2 11 11 N 1.28675 * 109.63142 * 179.81591 * 10 9 7 12 12 N 1.40117 * 108.93661 * 0.44474 * 11 10 9 13 13 C 1.46498 * 126.49637 * 179.72200 * 12 11 10 14 14 C 1.54273 * 110.03077 * 57.16479 * 13 12 11 15 15 C 1.54886 * 104.19816 * 217.10659 * 14 13 12 16 16 C 1.54887 * 102.74785 * 37.94543 * 15 14 13 17 17 C 1.53877 * 110.03205 * 300.00533 * 13 12 11 18 18 C 1.35024 * 107.01602 * 359.72696 * 12 11 10 19 19 C 1.50700 * 126.77138 * 180.02562 * 18 12 11 20 20 C 1.52989 * 109.47336 * 89.97648 * 19 18 12 21 21 C 1.52996 * 117.50103 * 243.74369 * 20 19 18 22 22 C 1.53006 * 117.50070 * 175.08269 * 20 19 18 23 23 H 0.97002 * 119.99411 * 0.02562 * 1 2 3 24 24 H 1.08998 * 110.02450 * 178.60718 * 13 12 11 25 25 H 1.09000 * 110.48426 * 335.79169 * 14 13 12 26 26 H 1.09001 * 110.47912 * 98.42731 * 14 13 12 27 27 H 1.08994 * 110.75660 * 279.62883 * 15 14 13 28 28 H 1.09000 * 110.75324 * 156.25824 * 15 14 13 29 29 H 1.08997 * 110.48789 * 203.37981 * 16 15 14 30 30 H 1.09002 * 110.59925 * 80.78613 * 16 15 14 31 31 H 1.09000 * 110.03327 * 238.56571 * 17 13 12 32 32 H 1.08998 * 110.03344 * 359.94771 * 17 13 12 33 33 H 1.09009 * 109.46843 * 209.98061 * 19 18 12 34 34 H 1.08999 * 109.47279 * 329.97460 * 19 18 12 35 35 H 1.09001 * 115.55484 * 29.41916 * 20 19 18 36 36 H 1.08995 * 117.50253 * 0.02562 * 21 20 19 37 37 H 1.09010 * 117.49882 * 145.02150 * 21 20 19 38 38 H 1.08998 * 117.49871 * 214.98444 * 22 20 19 39 39 H 1.09005 * 117.49623 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 2.3862 2.1072 -1.3948 5 1 1.4980 2.6200 0.8027 6 1 3.5902 1.4120 0.5921 7 6 2.0086 -1.2102 0.0005 8 1 3.0841 -1.2128 -0.0976 9 6 1.3064 -2.4324 0.1236 10 7 -0.0340 -2.5778 0.1493 11 7 -0.3314 -3.8241 0.2672 12 7 0.8529 -4.5697 0.3357 13 6 0.9600 -6.0238 0.4784 14 6 0.2098 -6.7245 -0.6733 15 6 -0.4265 -7.9708 -0.0095 16 6 -0.8553 -7.4367 1.3797 17 6 0.2827 -6.4767 1.7837 18 6 1.8768 -3.6942 0.2454 19 6 3.3478 -4.0207 0.2710 20 6 3.8392 -4.2724 -1.1558 21 6 4.3551 -5.6739 -1.4884 22 6 5.3378 -4.5077 -1.3557 23 1 -0.4849 0.8401 -0.0004 24 1 2.0082 -6.3226 0.4784 25 1 -0.5632 -6.0712 -1.0782 26 1 0.9068 -7.0232 -1.4564 27 1 0.3070 -8.7704 0.0936 28 1 -1.2929 -8.3107 -0.5770 29 1 -0.9358 -8.2553 2.0949 30 1 -1.8008 -6.8990 1.3086 31 1 1.0020 -6.9960 2.4170 32 1 -0.1249 -5.6145 2.3115 33 1 3.8981 -3.1846 0.7027 34 1 3.5114 -4.9135 0.8744 35 1 3.3057 -3.7336 -1.9388 36 1 4.3441 -6.4167 -0.6909 37 1 4.1612 -6.0569 -2.4904 38 1 5.7899 -4.1240 -2.2703 39 1 5.9736 -4.4827 -0.4707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:21 Heat of formation + Delta-G solvation = 93.731710 kcal Electronic energy + Delta-G solvation = -19986.690896 eV Core-core repulsion = 17124.112009 eV Total energy + Delta-G solvation = -2862.578887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10495 -37.56900 -37.04040 -33.35648 -32.11402 -30.45791 -28.55305 -27.59235 -26.67042 -24.45880 -22.13778 -21.56282 -20.65960 -20.38937 -19.52257 -18.64768 -16.90785 -16.05695 -15.26366 -14.89559 -14.80057 -14.37177 -13.94095 -13.44364 -13.24156 -13.09396 -12.73598 -11.98016 -11.70305 -11.44381 -11.31543 -11.11641 -11.02806 -11.00448 -10.95952 -10.92211 -10.86639 -10.50610 -10.44772 -10.21465 -10.03814 -9.60051 -9.46636 -9.18789 -8.77604 -8.31667 -7.31480 -6.31342 -4.09086 2.88024 3.19428 3.24044 3.27641 3.66825 4.14925 4.18298 4.37516 4.72189 4.78185 5.02065 5.12174 5.26361 5.28290 5.43363 5.56888 5.59969 5.63434 5.68239 5.75519 5.77850 5.84523 5.98507 5.99807 6.06087 6.13656 6.14930 6.31715 6.32446 6.35632 6.41323 6.49239 6.58510 6.77376 7.02361 7.23462 7.50967 7.59666 8.27394 8.50288 8.90595 9.15698 10.30524 10.65810 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.007091 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.615458 B = 3947.710217 C = 5156.279682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.450 4.450 8 H 0.080 0.920 9 C 0.154 3.846 10 N -0.232 5.232 11 N -0.130 5.130 12 N -0.367 5.367 13 C 0.164 3.836 14 C -0.129 4.129 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.132 4.132 18 C -0.111 4.111 19 C 0.016 3.984 20 C -0.130 4.130 21 C -0.190 4.190 22 C -0.185 4.185 23 H 0.270 0.730 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -12.386 0.122 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.024 3.976 10 N -0.104 5.104 11 N -0.106 5.106 12 N -0.162 5.162 13 C 0.059 3.941 14 C -0.168 4.168 15 C -0.159 4.159 16 C -0.157 4.157 17 C -0.170 4.170 18 C -0.243 4.243 19 C -0.024 4.024 20 C -0.149 4.149 21 C -0.227 4.227 22 C -0.222 4.222 23 H 0.081 0.919 24 H 0.107 0.893 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.809 -12.299 0.150 12.876 hybrid contribution 1.576 0.730 -0.067 1.738 sum 5.385 -11.569 0.083 12.761 Atomic orbital electron populations 1.70034 1.06763 1.27587 1.35998 1.25766 0.94752 1.00392 0.93601 0.86394 0.80347 0.81815 0.78586 1.19999 1.20554 1.18876 1.18517 0.93878 0.88095 1.48159 0.90172 1.18967 0.87579 0.91711 0.99380 1.75115 1.14396 1.05469 1.15425 1.81441 1.05323 0.98795 1.25010 1.49576 1.06206 1.05343 1.55114 1.21605 0.99919 0.77293 0.95239 1.22717 1.00186 0.96809 0.97065 1.22447 1.00136 0.97018 0.96293 1.22303 0.98873 0.98132 0.96419 1.22505 0.97803 0.99980 0.96741 1.21284 0.89909 0.90803 1.22257 1.19161 0.89778 1.00395 0.93052 1.22468 0.94964 0.97816 0.99618 1.23000 1.05623 0.91990 1.02054 1.22933 0.93268 1.03252 1.02765 0.91913 0.89286 0.89917 0.91529 0.91651 0.91458 0.91928 0.91124 0.91592 0.90454 0.89947 0.93186 0.87558 0.89468 0.89553 0.89297 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.32 11.95 55.54 0.66 -21.65 16 2 C 0.07 1.98 5.49 -17.35 -0.10 1.88 16 3 Si 0.90 19.84 29.56 -169.99 -5.03 14.82 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.45 -12.33 9.08 -37.78 -0.34 -12.68 16 8 H 0.08 2.05 7.39 -52.49 -0.39 1.66 16 9 C 0.15 4.25 6.72 -85.02 -0.57 3.68 16 10 N -0.23 -6.80 10.57 32.05 0.34 -6.46 16 11 N -0.13 -3.38 13.25 60.35 0.80 -2.58 16 12 N -0.37 -8.03 3.21 -48.66 -0.16 -8.19 16 13 C 0.16 2.72 3.73 -66.81 -0.25 2.47 16 14 C -0.13 -1.92 6.52 -25.07 -0.16 -2.09 16 15 C -0.12 -1.42 6.91 -24.74 -0.17 -1.59 16 16 C -0.12 -1.51 6.83 -25.07 -0.17 -1.68 16 17 C -0.13 -1.96 6.56 -25.61 -0.17 -2.13 16 18 C -0.11 -2.58 6.32 -80.90 -0.51 -3.09 16 19 C 0.02 0.29 5.38 -27.89 -0.15 0.14 16 20 C -0.13 -2.15 5.72 -90.62 -0.52 -2.67 16 21 C -0.19 -2.53 10.18 -26.69 -0.27 -2.81 16 22 C -0.19 -2.48 10.26 -26.69 -0.27 -2.76 16 23 H 0.27 7.14 8.30 -40.82 -0.34 6.80 16 24 H 0.09 1.34 6.86 -51.93 -0.36 0.98 16 25 H 0.08 1.47 7.72 -51.93 -0.40 1.07 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.38 7.87 -51.93 -0.41 0.97 16 33 H 0.08 1.55 7.63 -51.92 -0.40 1.16 16 34 H 0.05 0.81 6.97 -51.93 -0.36 0.45 16 35 H 0.11 2.03 8.07 -51.93 -0.42 1.61 16 36 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 37 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 321.65 15.07 4.85 4.85 Total: -1.00 -31.11 321.65 -8.28 -39.39 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.09 Total: 3.14 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -3.66 Total: -23.31 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 1.65 Total: -38.88 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.11 -8.28 -39.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.117 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds