Wall clock time and date at job start Mon Mar 30 2020 06:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30988 * 1 3 3 Si 1.86803 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47184 * 274.97967 * 3 2 1 5 5 H 1.48495 * 109.47084 * 34.98258 * 3 2 1 6 6 H 1.48503 * 109.46848 * 154.98370 * 3 2 1 7 7 C 1.39742 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99795 * 173.97915 * 7 2 1 9 9 C 1.41489 * 119.99777 * 354.26068 * 7 2 1 10 10 N 1.34846 * 126.02082 * 5.14985 * 9 7 2 11 11 N 1.28675 * 109.63142 * 179.81591 * 10 9 7 12 12 N 1.40117 * 108.93661 * 0.44474 * 11 10 9 13 13 C 1.46498 * 126.49637 * 179.72200 * 12 11 10 14 14 C 1.54273 * 110.03077 * 57.16479 * 13 12 11 15 15 C 1.54886 * 104.19816 * 217.10659 * 14 13 12 16 16 C 1.54887 * 102.74785 * 37.94543 * 15 14 13 17 17 C 1.53877 * 110.03205 * 300.00533 * 13 12 11 18 18 C 1.35024 * 107.01602 * 359.72696 * 12 11 10 19 19 C 1.50700 * 126.77138 * 180.02562 * 18 12 11 20 20 C 1.52989 * 109.47336 * 89.97648 * 19 18 12 21 21 C 1.52996 * 117.50103 * 243.74369 * 20 19 18 22 22 C 1.53006 * 117.50070 * 175.08269 * 20 19 18 23 23 H 0.97002 * 119.99411 * 0.02562 * 1 2 3 24 24 H 1.08998 * 110.02450 * 178.60718 * 13 12 11 25 25 H 1.09000 * 110.48426 * 335.79169 * 14 13 12 26 26 H 1.09001 * 110.47912 * 98.42731 * 14 13 12 27 27 H 1.08994 * 110.75660 * 279.62883 * 15 14 13 28 28 H 1.09000 * 110.75324 * 156.25824 * 15 14 13 29 29 H 1.08997 * 110.48789 * 203.37981 * 16 15 14 30 30 H 1.09002 * 110.59925 * 80.78613 * 16 15 14 31 31 H 1.09000 * 110.03327 * 238.56571 * 17 13 12 32 32 H 1.08998 * 110.03344 * 359.94771 * 17 13 12 33 33 H 1.09009 * 109.46843 * 209.98061 * 19 18 12 34 34 H 1.08999 * 109.47279 * 329.97460 * 19 18 12 35 35 H 1.09001 * 115.55484 * 29.41916 * 20 19 18 36 36 H 1.08995 * 117.50253 * 0.02562 * 21 20 19 37 37 H 1.09010 * 117.49882 * 145.02150 * 21 20 19 38 38 H 1.08998 * 117.49871 * 214.98444 * 22 20 19 39 39 H 1.09005 * 117.49623 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 2.3862 2.1072 -1.3948 5 1 1.4980 2.6200 0.8027 6 1 3.5902 1.4120 0.5921 7 6 2.0086 -1.2102 0.0005 8 1 3.0841 -1.2128 -0.0976 9 6 1.3064 -2.4324 0.1236 10 7 -0.0340 -2.5778 0.1493 11 7 -0.3314 -3.8241 0.2672 12 7 0.8529 -4.5697 0.3357 13 6 0.9600 -6.0238 0.4784 14 6 0.2098 -6.7245 -0.6733 15 6 -0.4265 -7.9708 -0.0095 16 6 -0.8553 -7.4367 1.3797 17 6 0.2827 -6.4767 1.7837 18 6 1.8768 -3.6942 0.2454 19 6 3.3478 -4.0207 0.2710 20 6 3.8392 -4.2724 -1.1558 21 6 4.3551 -5.6739 -1.4884 22 6 5.3378 -4.5077 -1.3557 23 1 -0.4849 0.8401 -0.0004 24 1 2.0082 -6.3226 0.4784 25 1 -0.5632 -6.0712 -1.0782 26 1 0.9068 -7.0232 -1.4564 27 1 0.3070 -8.7704 0.0936 28 1 -1.2929 -8.3107 -0.5770 29 1 -0.9358 -8.2553 2.0949 30 1 -1.8008 -6.8990 1.3086 31 1 1.0020 -6.9960 2.4170 32 1 -0.1249 -5.6145 2.3115 33 1 3.8981 -3.1846 0.7027 34 1 3.5114 -4.9135 0.8744 35 1 3.3057 -3.7336 -1.9388 36 1 4.3441 -6.4167 -0.6909 37 1 4.1612 -6.0569 -2.4904 38 1 5.7899 -4.1240 -2.2703 39 1 5.9736 -4.4827 -0.4707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:20 Heat of formation + Delta-G solvation = 75.427138 kcal Electronic energy + Delta-G solvation = -19987.484642 eV Core-core repulsion = 17124.112009 eV Total energy + Delta-G solvation = -2863.372632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.95161 -38.86445 -38.27234 -35.29460 -33.82449 -32.18517 -29.70770 -29.23801 -28.18055 -26.40206 -23.29384 -23.11430 -22.05679 -21.53508 -21.21654 -20.24655 -18.70012 -17.52638 -16.82006 -16.34688 -16.22965 -15.90959 -15.20642 -14.97720 -14.80641 -14.47122 -14.30326 -13.49776 -13.17340 -13.02123 -12.76892 -12.65080 -12.52423 -12.43615 -12.25210 -12.10219 -12.08645 -11.97480 -11.84887 -11.53436 -11.51001 -11.17620 -11.08740 -10.75450 -10.64531 -10.14134 -9.29868 -8.28627 -6.15206 1.04713 1.42686 1.44085 1.57747 2.02456 2.34139 2.36682 3.00786 3.52035 3.53975 3.61592 3.80875 3.97371 4.06186 4.14398 4.27478 4.30919 4.34956 4.47629 4.50171 4.61020 4.74337 4.80764 4.84360 4.87704 4.96969 5.00839 5.07158 5.09961 5.16417 5.20376 5.23741 5.33266 5.36586 5.44103 5.45484 5.57248 5.70687 6.43110 6.53832 6.93794 7.12353 8.35098 8.71541 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.007091 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.615458 B = 3947.710217 C = 5156.279682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.019 3.981 3 Si 0.983 3.017 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.250 1.250 7 C -0.478 4.478 8 H 0.089 0.911 9 C 0.104 3.896 10 N -0.289 5.289 11 N -0.168 5.168 12 N -0.346 5.346 13 C 0.145 3.855 14 C -0.129 4.129 15 C -0.107 4.107 16 C -0.118 4.118 17 C -0.129 4.129 18 C -0.079 4.079 19 C 0.020 3.980 20 C -0.163 4.163 21 C -0.167 4.167 22 C -0.166 4.166 23 H 0.271 0.729 24 H 0.118 0.882 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 -15.381 0.373 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.174 1.174 7 C -0.515 4.515 8 H 0.107 0.893 9 C -0.029 4.029 10 N -0.158 5.158 11 N -0.143 5.143 12 N -0.141 5.141 13 C 0.043 3.957 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.155 4.155 17 C -0.168 4.168 18 C -0.214 4.214 19 C -0.020 4.020 20 C -0.182 4.182 21 C -0.204 4.204 22 C -0.203 4.203 23 H 0.080 0.920 24 H 0.136 0.864 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.863 -15.362 0.404 16.830 hybrid contribution 0.697 1.403 -0.145 1.573 sum 7.560 -13.959 0.258 15.877 Atomic orbital electron populations 1.70207 1.08794 1.28416 1.38476 1.26751 0.95521 1.04301 0.92798 0.85188 0.79141 0.76492 0.78745 1.19352 1.20355 1.17380 1.18863 0.94366 0.88909 1.49369 0.89283 1.19566 0.87815 0.93839 1.01657 1.75053 1.15820 1.07043 1.17839 1.81317 1.06784 0.98447 1.27734 1.50048 1.05010 1.07487 1.51521 1.22310 1.02246 0.73970 0.97199 1.22703 0.99487 0.97519 0.97016 1.22443 1.01131 0.96010 0.94887 1.22313 0.96852 0.98299 0.98055 1.22513 0.99193 0.99307 0.95758 1.22115 0.92355 0.89824 1.17111 1.19295 0.85963 1.01561 0.95162 1.22098 0.97796 1.01302 0.97036 1.23137 1.03220 0.90755 1.03298 1.23048 0.91132 1.02191 1.03900 0.91979 0.86402 0.93812 0.89759 0.88265 0.90412 0.88722 0.93521 0.88176 0.94386 0.90552 0.89929 0.91237 0.87228 0.88628 0.88417 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.75 11.95 21.80 0.26 -50.49 16 2 C 0.02 1.09 5.49 85.18 0.47 1.56 16 3 Si 0.98 42.20 29.56 68.60 2.03 44.23 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.48 -27.40 9.08 23.44 0.21 -27.18 16 8 H 0.09 4.69 7.39 -2.91 -0.02 4.67 16 9 C 0.10 6.07 6.72 39.67 0.27 6.34 16 10 N -0.29 -18.07 10.57 -52.52 -0.56 -18.63 16 11 N -0.17 -9.28 13.25 37.02 0.49 -8.79 16 12 N -0.35 -15.42 3.21 -307.86 -0.99 -16.41 16 13 C 0.14 4.52 3.73 45.72 0.17 4.69 16 14 C -0.13 -3.60 6.52 31.67 0.21 -3.39 16 15 C -0.11 -2.13 6.91 31.88 0.22 -1.91 16 16 C -0.12 -2.69 6.83 31.67 0.22 -2.47 16 17 C -0.13 -3.59 6.56 31.32 0.21 -3.38 16 18 C -0.08 -3.70 6.32 42.25 0.27 -3.43 16 19 C 0.02 0.69 5.38 29.84 0.16 0.85 16 20 C -0.16 -5.10 5.72 -10.80 -0.06 -5.16 16 21 C -0.17 -3.73 10.18 30.62 0.31 -3.42 16 22 C -0.17 -3.82 10.26 30.62 0.31 -3.50 16 23 H 0.27 15.26 8.30 -92.71 -0.77 14.49 16 24 H 0.12 3.01 6.86 -2.39 -0.02 3.00 16 25 H 0.04 1.58 7.72 -2.39 -0.02 1.56 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.36 7.87 -2.39 -0.02 1.34 16 33 H 0.08 2.79 7.63 -2.38 -0.02 2.77 16 34 H 0.08 2.35 6.97 -2.39 -0.02 2.33 16 35 H 0.07 2.69 8.07 -2.39 -0.02 2.67 16 36 H 0.11 1.99 8.03 -2.39 -0.02 1.98 16 37 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -75.72 321.65 5.22 -70.50 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 1.03 Total: 20.01 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 2.96 Total: -40.41 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -0.79 Total: -94.32 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -75.72 5.22 -70.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.925 kcal (2) G-P(sol) polarization free energy of solvation -75.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds