Wall clock time and date at job start Mon Mar 30 2020 06:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30990 * 1 3 3 Si 1.86805 * 120.00177 * 2 1 4 4 H 1.48496 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47070 * 300.00710 * 3 2 1 6 6 H 1.48503 * 109.46603 * 60.00647 * 3 2 1 7 7 C 1.39734 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00518 * 179.97438 * 7 2 1 9 9 C 1.41498 * 119.99866 * 359.97438 * 7 2 1 10 10 N 1.34841 * 126.02207 * 354.01628 * 9 7 2 11 11 N 1.28670 * 109.63524 * 179.97438 * 10 9 7 12 12 N 1.40125 * 108.93474 * 359.97438 * 11 10 9 13 13 C 1.46497 * 126.48963 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47227 * 90.02730 * 13 12 11 15 15 C 1.52995 * 109.47480 * 179.97438 * 14 13 12 16 16 C 1.53780 * 113.61731 * 185.00211 * 15 14 13 17 17 C 1.53782 * 87.17306 * 220.06067 * 16 15 14 18 18 C 1.53779 * 87.08040 * 25.38833 * 17 16 15 19 19 C 1.35018 * 107.01677 * 0.24539 * 12 11 10 20 20 C 1.50698 * 126.77390 * 179.74176 * 19 12 11 21 21 C 1.53003 * 117.49817 * 311.28153 * 20 19 12 22 22 C 1.52996 * 59.99909 * 252.51230 * 21 20 19 23 23 H 0.97001 * 119.99535 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47638 * 330.02619 * 13 12 11 25 25 H 1.09003 * 109.47111 * 210.02995 * 13 12 11 26 26 H 1.09004 * 109.46931 * 59.99852 * 14 13 12 27 27 H 1.09003 * 109.47291 * 300.00154 * 14 13 12 28 28 H 1.09008 * 112.90978 * 316.25152 * 15 14 13 29 29 H 1.08999 * 113.61578 * 105.46977 * 16 15 14 30 30 H 1.08999 * 113.61075 * 334.65024 * 16 15 14 31 31 H 1.08994 * 113.61294 * 139.93860 * 17 16 15 32 32 H 1.09000 * 113.61229 * 270.83730 * 17 16 15 33 33 H 1.09004 * 113.61568 * 89.11885 * 18 17 16 34 34 H 1.08997 * 113.61450 * 219.92953 * 18 17 16 35 35 H 1.08998 * 115.55300 * 96.98784 * 20 19 12 36 36 H 1.09005 * 117.49776 * 0.02562 * 21 20 19 37 37 H 1.08998 * 117.49947 * 145.02073 * 21 20 19 38 38 H 1.09006 * 117.49685 * 252.50890 * 22 21 20 39 39 H 1.08995 * 117.50305 * 107.48968 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 3.7039 1.3463 -0.0006 5 1 1.8851 2.3965 -1.2124 6 1 1.8853 2.3963 1.2126 7 6 2.0086 -1.2101 -0.0005 8 1 3.0885 -1.2102 -0.0010 9 6 1.3011 -2.4355 -0.0005 10 7 -0.0347 -2.5800 0.1136 11 7 -0.3394 -3.8295 0.0751 12 7 0.8350 -4.5795 -0.0724 13 6 0.9318 -6.0387 -0.1584 14 6 0.8343 -6.4709 -1.6228 15 6 0.9360 -7.9949 -1.7127 16 6 0.9712 -8.5259 -3.1555 17 6 0.0566 -9.6660 -2.6773 18 6 -0.4172 -8.7143 -1.5662 19 6 1.8611 -3.7028 -0.1143 20 6 3.3244 -4.0329 -0.2583 21 6 3.8983 -5.1142 0.6596 22 6 4.2529 -3.6444 0.8940 23 1 -0.4849 0.8401 0.0004 24 1 0.1182 -6.4909 0.4088 25 1 1.8868 -6.3645 0.2538 26 1 1.6480 -6.0188 -2.1900 27 1 -0.1207 -6.1452 -2.0350 28 1 1.7202 -8.4061 -1.0769 29 1 1.9583 -8.8620 -3.4731 30 1 0.4981 -7.8602 -3.8774 31 1 -0.7246 -9.9274 -3.3909 32 1 0.5999 -10.5349 -2.3057 33 1 -1.2704 -8.0992 -1.8525 34 1 -0.5525 -9.2026 -0.6012 35 1 3.7237 -3.9675 -1.2704 36 1 3.2174 -5.5871 1.3673 37 1 4.6754 -5.7604 0.2513 38 1 5.2633 -3.3238 0.6400 39 1 3.8054 -3.1500 1.7561 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:15 Heat of formation + Delta-G solvation = 120.481530 kcal Electronic energy + Delta-G solvation = -19515.801802 eV Core-core repulsion = 16654.382875 eV Total energy + Delta-G solvation = -2861.418927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06562 -38.89952 -36.36943 -34.17714 -32.92127 -29.92951 -29.16528 -25.89994 -25.53950 -24.57230 -22.57742 -22.05310 -21.54106 -20.05078 -19.50118 -18.72011 -17.07453 -15.77590 -15.42667 -15.13718 -14.78208 -14.31686 -14.07834 -13.85296 -13.57634 -12.91666 -12.53702 -12.48780 -12.09198 -11.74820 -11.50122 -11.21403 -11.10167 -11.04681 -10.91569 -10.69684 -10.61672 -10.33253 -10.25184 -10.13603 -9.98057 -9.75113 -9.61799 -9.22315 -8.72824 -8.35372 -7.34008 -6.31482 -4.09908 2.85916 3.18722 3.24157 3.28265 3.64759 4.17996 4.35606 4.37187 4.54025 4.59857 4.71149 4.79842 5.17408 5.28854 5.40959 5.46059 5.47350 5.53846 5.61672 5.64867 5.68921 5.71817 5.78983 5.83337 5.87099 5.96674 6.07705 6.16065 6.26573 6.32733 6.37536 6.52462 6.55867 6.74951 7.00005 7.20371 7.44636 7.57865 8.22736 8.52396 8.89258 9.15755 10.27034 10.65782 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027874 B = 0.004994 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.271477 B = 5605.667211 C = 6170.581401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.446 4.446 8 H 0.083 0.917 9 C 0.158 3.842 10 N -0.231 5.231 11 N -0.134 5.134 12 N -0.371 5.371 13 C 0.136 3.864 14 C -0.121 4.121 15 C -0.106 4.106 16 C -0.136 4.136 17 C -0.144 4.144 18 C -0.138 4.138 19 C -0.090 4.090 20 C -0.039 4.039 21 C -0.194 4.194 22 C -0.157 4.157 23 H 0.270 0.730 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 -14.198 -2.822 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.146 4.146 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.482 4.482 8 H 0.101 0.899 9 C 0.028 3.972 10 N -0.103 5.103 11 N -0.109 5.109 12 N -0.167 5.167 13 C 0.013 3.987 14 C -0.160 4.160 15 C -0.125 4.125 16 C -0.174 4.174 17 C -0.181 4.181 18 C -0.176 4.176 19 C -0.221 4.221 20 C -0.059 4.059 21 C -0.231 4.231 22 C -0.195 4.195 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.663 -14.117 -2.673 14.827 hybrid contribution 1.475 0.705 -0.156 1.642 sum 5.138 -13.412 -2.829 14.638 Atomic orbital electron populations 1.70033 1.06778 1.27544 1.36181 1.25790 0.94774 1.00457 0.93598 0.86330 0.80572 0.81987 0.78125 1.18756 1.20340 1.20311 1.18583 0.93630 0.87796 1.48238 0.89935 1.18955 0.87533 0.91647 0.99038 1.75094 1.14228 1.05405 1.15587 1.81486 1.05563 0.98862 1.25022 1.49472 1.06438 1.05466 1.55300 1.21460 1.02672 0.77528 0.97087 1.21931 1.03109 0.94275 0.96673 1.22516 0.98058 0.94594 0.97358 1.22922 0.99874 0.97868 0.96699 1.22806 0.99526 0.97006 0.98771 1.23037 0.97449 0.98227 0.98873 1.20500 0.88557 0.90478 1.22591 1.19760 0.89088 1.02073 0.95018 1.22983 1.03477 0.92380 1.04278 1.22843 0.99361 0.96197 1.01131 0.91928 0.90288 0.89891 0.91337 0.91207 0.89223 0.91704 0.90120 0.91721 0.90449 0.89929 0.91625 0.88214 0.89521 0.89359 0.89150 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.44 11.94 55.54 0.66 -21.78 16 2 C 0.07 1.95 5.49 -17.35 -0.10 1.86 16 3 Si 0.90 19.87 29.56 -169.99 -5.02 14.85 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.45 -12.29 9.16 -37.78 -0.35 -12.64 16 8 H 0.08 2.12 7.48 -52.49 -0.39 1.73 16 9 C 0.16 4.43 6.71 -85.01 -0.57 3.86 16 10 N -0.23 -6.86 10.58 32.05 0.34 -6.52 16 11 N -0.13 -3.56 13.74 60.35 0.83 -2.73 16 12 N -0.37 -8.28 3.63 -56.18 -0.20 -8.49 16 13 C 0.14 2.23 6.28 -4.04 -0.03 2.21 16 14 C -0.12 -1.73 5.38 -26.74 -0.14 -1.88 16 15 C -0.11 -1.16 3.66 -89.72 -0.33 -1.49 16 16 C -0.14 -1.36 7.64 -25.92 -0.20 -1.55 16 17 C -0.14 -1.30 8.08 -25.92 -0.21 -1.51 16 18 C -0.14 -1.42 7.64 -25.83 -0.20 -1.62 16 19 C -0.09 -2.12 6.54 -80.90 -0.53 -2.64 16 20 C -0.04 -0.73 5.70 -91.77 -0.52 -1.25 16 21 C -0.19 -2.90 8.89 -26.73 -0.24 -3.14 16 22 C -0.16 -2.65 9.98 -26.73 -0.27 -2.91 16 23 H 0.27 7.14 8.30 -40.82 -0.34 6.80 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.08 1.20 5.35 -51.93 -0.28 0.93 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 28 H 0.09 0.90 8.13 -51.92 -0.42 0.47 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.92 7.90 -51.93 -0.41 0.51 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.09 1.33 6.98 -51.93 -0.36 0.97 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -31.74 323.44 -8.25 -39.99 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.05 Total: 2.51 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -3.67 Total: -22.72 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 1.63 Total: -39.51 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.74 -8.25 -39.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.473 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds