Wall clock time and date at job start Mon Mar 30 2020 06:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30990 * 1 3 3 Si 1.86805 * 120.00177 * 2 1 4 4 H 1.48496 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47070 * 300.00710 * 3 2 1 6 6 H 1.48503 * 109.46603 * 60.00647 * 3 2 1 7 7 C 1.39734 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00518 * 179.97438 * 7 2 1 9 9 C 1.41498 * 119.99866 * 359.97438 * 7 2 1 10 10 N 1.34841 * 126.02207 * 354.01628 * 9 7 2 11 11 N 1.28670 * 109.63524 * 179.97438 * 10 9 7 12 12 N 1.40125 * 108.93474 * 359.97438 * 11 10 9 13 13 C 1.46497 * 126.48963 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47227 * 90.02730 * 13 12 11 15 15 C 1.52995 * 109.47480 * 179.97438 * 14 13 12 16 16 C 1.53780 * 113.61731 * 185.00211 * 15 14 13 17 17 C 1.53782 * 87.17306 * 220.06067 * 16 15 14 18 18 C 1.53779 * 87.08040 * 25.38833 * 17 16 15 19 19 C 1.35018 * 107.01677 * 0.24539 * 12 11 10 20 20 C 1.50698 * 126.77390 * 179.74176 * 19 12 11 21 21 C 1.53003 * 117.49817 * 311.28153 * 20 19 12 22 22 C 1.52996 * 59.99909 * 252.51230 * 21 20 19 23 23 H 0.97001 * 119.99535 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47638 * 330.02619 * 13 12 11 25 25 H 1.09003 * 109.47111 * 210.02995 * 13 12 11 26 26 H 1.09004 * 109.46931 * 59.99852 * 14 13 12 27 27 H 1.09003 * 109.47291 * 300.00154 * 14 13 12 28 28 H 1.09008 * 112.90978 * 316.25152 * 15 14 13 29 29 H 1.08999 * 113.61578 * 105.46977 * 16 15 14 30 30 H 1.08999 * 113.61075 * 334.65024 * 16 15 14 31 31 H 1.08994 * 113.61294 * 139.93860 * 17 16 15 32 32 H 1.09000 * 113.61229 * 270.83730 * 17 16 15 33 33 H 1.09004 * 113.61568 * 89.11885 * 18 17 16 34 34 H 1.08997 * 113.61450 * 219.92953 * 18 17 16 35 35 H 1.08998 * 115.55300 * 96.98784 * 20 19 12 36 36 H 1.09005 * 117.49776 * 0.02562 * 21 20 19 37 37 H 1.08998 * 117.49947 * 145.02073 * 21 20 19 38 38 H 1.09006 * 117.49685 * 252.50890 * 22 21 20 39 39 H 1.08995 * 117.50305 * 107.48968 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 3.7039 1.3463 -0.0006 5 1 1.8851 2.3965 -1.2124 6 1 1.8853 2.3963 1.2126 7 6 2.0086 -1.2101 -0.0005 8 1 3.0885 -1.2102 -0.0010 9 6 1.3011 -2.4355 -0.0005 10 7 -0.0347 -2.5800 0.1136 11 7 -0.3394 -3.8295 0.0751 12 7 0.8350 -4.5795 -0.0724 13 6 0.9318 -6.0387 -0.1584 14 6 0.8343 -6.4709 -1.6228 15 6 0.9360 -7.9949 -1.7127 16 6 0.9712 -8.5259 -3.1555 17 6 0.0566 -9.6660 -2.6773 18 6 -0.4172 -8.7143 -1.5662 19 6 1.8611 -3.7028 -0.1143 20 6 3.3244 -4.0329 -0.2583 21 6 3.8983 -5.1142 0.6596 22 6 4.2529 -3.6444 0.8940 23 1 -0.4849 0.8401 0.0004 24 1 0.1182 -6.4909 0.4088 25 1 1.8868 -6.3645 0.2538 26 1 1.6480 -6.0188 -2.1900 27 1 -0.1207 -6.1452 -2.0350 28 1 1.7202 -8.4061 -1.0769 29 1 1.9583 -8.8620 -3.4731 30 1 0.4981 -7.8602 -3.8774 31 1 -0.7246 -9.9274 -3.3909 32 1 0.5999 -10.5349 -2.3057 33 1 -1.2704 -8.0992 -1.8525 34 1 -0.5525 -9.2026 -0.6012 35 1 3.7237 -3.9675 -1.2704 36 1 3.2174 -5.5871 1.3673 37 1 4.6754 -5.7604 0.2513 38 1 5.2633 -3.3238 0.6400 39 1 3.8054 -3.1500 1.7561 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:14 Heat of formation + Delta-G solvation = 101.856642 kcal Electronic energy + Delta-G solvation = -19516.609438 eV Core-core repulsion = 16654.382875 eV Total energy + Delta-G solvation = -2862.226563 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94199 -39.80571 -37.81834 -35.85211 -34.73278 -31.48861 -31.07465 -27.44008 -26.52394 -26.10537 -24.06883 -23.42057 -22.75646 -21.94631 -20.62278 -20.11643 -18.97962 -17.10887 -16.72479 -16.61058 -16.36867 -15.66063 -15.46942 -15.21815 -15.03077 -14.62959 -13.84453 -13.48162 -13.31220 -13.28626 -12.89813 -12.79540 -12.67835 -12.47016 -12.26048 -12.11558 -11.97286 -11.61861 -11.51789 -11.34841 -11.31333 -11.23951 -11.03611 -10.98964 -10.56391 -10.17819 -9.33497 -8.28393 -6.16117 0.99864 1.43600 1.44117 1.59981 1.99430 2.33574 2.35777 3.00111 3.53721 3.60784 3.70689 3.82395 3.86363 3.95852 4.02975 4.10924 4.22293 4.27428 4.37776 4.51809 4.62502 4.73414 4.80804 4.86901 4.90336 4.92341 4.99693 5.10366 5.11870 5.13510 5.20025 5.25086 5.29858 5.38176 5.40334 5.52344 5.61598 5.66398 6.43595 6.48213 6.91939 7.12563 8.29922 8.71949 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027874 B = 0.004994 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.271477 B = 5605.667211 C = 6170.581401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.018 3.982 3 Si 0.985 3.015 4 H -0.247 1.247 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.472 4.472 8 H 0.093 0.907 9 C 0.109 3.891 10 N -0.287 5.287 11 N -0.178 5.178 12 N -0.354 5.354 13 C 0.124 3.876 14 C -0.109 4.109 15 C -0.101 4.101 16 C -0.137 4.137 17 C -0.134 4.134 18 C -0.145 4.145 19 C -0.054 4.054 20 C -0.074 4.074 21 C -0.155 4.155 22 C -0.158 4.158 23 H 0.271 0.729 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.729 -16.591 -2.985 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.170 1.170 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.509 4.509 8 H 0.111 0.889 9 C -0.025 4.025 10 N -0.155 5.155 11 N -0.153 5.153 12 N -0.148 5.148 13 C 0.003 3.997 14 C -0.148 4.148 15 C -0.119 4.119 16 C -0.175 4.175 17 C -0.171 4.171 18 C -0.182 4.182 19 C -0.190 4.190 20 C -0.095 4.095 21 C -0.192 4.192 22 C -0.196 4.196 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.132 0.868 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.895 -16.580 -2.836 18.179 hybrid contribution 0.530 1.195 -0.114 1.312 sum 7.425 -15.386 -2.949 17.336 Atomic orbital electron populations 1.70204 1.08845 1.28425 1.38625 1.26784 0.95535 1.04399 0.92774 0.85122 0.79652 0.76622 0.77993 1.17032 1.20016 1.20053 1.18927 0.94153 0.88479 1.49363 0.88888 1.19590 0.87757 0.93850 1.01260 1.75030 1.15733 1.06844 1.17914 1.81359 1.07113 0.98635 1.28181 1.49970 1.05377 1.07651 1.51761 1.22021 1.04669 0.73971 0.99052 1.21813 1.01366 0.97108 0.94527 1.22554 0.99140 0.91506 0.98748 1.22925 1.00860 0.97987 0.95684 1.22792 0.99359 0.96971 0.97999 1.23057 0.96580 0.98522 1.00058 1.21315 0.91047 0.89445 1.17176 1.19942 0.86089 1.06560 0.96874 1.23112 1.03013 0.91627 1.01427 1.22901 0.99911 0.97925 0.98848 0.91959 0.89402 0.86834 0.92051 0.93855 0.86966 0.90228 0.91373 0.91393 0.88615 0.91643 0.90623 0.86679 0.89698 0.85003 0.86168 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.64 11.94 21.79 0.26 -50.38 16 2 C 0.02 1.00 5.49 85.18 0.47 1.47 16 3 Si 0.98 41.83 29.56 68.60 2.03 43.86 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.47 -26.82 9.16 23.44 0.21 -26.60 16 8 H 0.09 4.84 7.48 -2.91 -0.02 4.81 16 9 C 0.11 6.30 6.71 39.67 0.27 6.57 16 10 N -0.29 -17.97 10.58 -52.51 -0.56 -18.53 16 11 N -0.18 -9.95 13.74 37.02 0.51 -9.44 16 12 N -0.35 -15.89 3.63 -331.64 -1.20 -17.10 16 13 C 0.12 3.86 6.28 86.38 0.54 4.40 16 14 C -0.11 -3.00 5.38 30.59 0.16 -2.84 16 15 C -0.10 -1.92 3.66 -10.21 -0.04 -1.95 16 16 C -0.14 -2.37 7.64 31.12 0.24 -2.14 16 17 C -0.13 -2.03 8.08 31.12 0.25 -1.77 16 18 C -0.14 -2.69 7.64 31.18 0.24 -2.45 16 19 C -0.05 -2.56 6.54 42.26 0.28 -2.28 16 20 C -0.07 -2.59 5.70 -11.54 -0.07 -2.65 16 21 C -0.15 -3.89 8.89 30.59 0.27 -3.62 16 22 C -0.16 -4.82 9.98 30.59 0.31 -4.52 16 23 H 0.27 15.17 8.30 -92.71 -0.77 14.40 16 24 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.11 2.86 5.35 -2.39 -0.01 2.85 16 26 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.04 1.41 7.85 -2.39 -0.02 1.40 16 28 H 0.11 1.70 8.13 -2.38 -0.02 1.69 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.44 7.90 -2.38 -0.02 1.42 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.08 2.20 6.98 -2.38 -0.02 2.19 16 37 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -75.15 323.44 5.20 -69.95 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.03 Total: 20.02 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 3.13 Total: -38.38 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -0.99 Total: -95.44 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -75.15 5.20 -69.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.808 kcal (2) G-P(sol) polarization free energy of solvation -75.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds