Wall clock time and date at job start Mon Mar 30 2020 06:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30982 * 1 3 3 Si 1.86807 * 119.99819 * 2 1 4 4 H 1.48499 * 109.47190 * 264.70939 * 3 2 1 5 5 H 1.48500 * 109.46990 * 24.70889 * 3 2 1 6 6 H 1.48500 * 109.46832 * 144.71239 * 3 2 1 7 7 C 1.39737 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99541 * 19.49289 * 7 2 1 9 9 C 1.41484 * 120.00410 * 199.48930 * 7 2 1 10 10 N 1.34844 * 126.02053 * 29.20515 * 9 7 2 11 11 N 1.28673 * 109.63398 * 179.97438 * 10 9 7 12 12 N 1.40119 * 108.93949 * 0.02562 * 11 10 9 13 13 C 1.46498 * 126.49711 * 179.97438 * 12 11 10 14 14 C 1.53007 * 109.46715 * 60.02766 * 13 12 11 15 15 C 1.52997 * 109.47106 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47211 * 59.99504 * 15 14 13 17 17 C 1.52997 * 109.47423 * 300.00234 * 16 15 14 18 18 C 1.52996 * 109.47405 * 300.02787 * 13 12 11 19 19 C 1.35029 * 107.01124 * 0.23870 * 12 11 10 20 20 C 1.50700 * 126.76976 * 179.74408 * 19 12 11 21 21 C 1.52991 * 117.49841 * 196.65905 * 20 19 12 22 22 C 1.52995 * 117.50012 * 127.99948 * 20 19 12 23 23 H 0.96996 * 120.00449 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47438 * 180.02562 * 13 12 11 25 25 H 1.08990 * 109.47176 * 59.99695 * 14 13 12 26 26 H 1.08999 * 109.46608 * 299.99824 * 14 13 12 27 27 H 1.08994 * 109.47421 * 179.97438 * 15 14 13 28 28 H 1.09001 * 109.46859 * 299.99827 * 15 14 13 29 29 H 1.09001 * 109.46945 * 60.00376 * 16 15 14 30 30 H 1.09005 * 109.47276 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.47175 * 300.00001 * 17 16 15 32 32 H 1.08998 * 109.47439 * 179.97438 * 17 16 15 33 33 H 1.09004 * 109.46947 * 299.99933 * 18 13 12 34 34 H 1.08999 * 109.47398 * 59.99269 * 18 13 12 35 35 H 1.09002 * 115.55251 * 342.32576 * 20 19 12 36 36 H 1.09002 * 117.50083 * 0.02562 * 21 20 19 37 37 H 1.09003 * 117.50325 * 145.01912 * 21 20 19 38 38 H 1.08997 * 117.49818 * 214.97951 * 22 20 19 39 39 H 1.09000 * 117.50046 * 359.97310 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 2.6031 1.9820 -1.3941 5 1 1.3898 2.6824 0.5852 6 1 3.4810 1.4751 0.8088 7 6 2.0086 -1.2101 0.0005 8 1 1.5150 -2.1188 -0.3112 9 6 3.3626 -1.2450 0.4093 10 7 3.9442 -0.4147 1.2986 11 7 5.1845 -0.7284 1.4359 12 7 5.4720 -1.8206 0.6066 13 6 6.7681 -2.4879 0.4625 14 6 7.2071 -3.0471 1.8174 15 6 8.5611 -3.7435 1.6673 16 6 9.6002 -2.7366 1.1701 17 6 9.1612 -2.1775 -0.1847 18 6 7.8076 -1.4815 -0.0348 19 6 4.3293 -2.1377 -0.0392 20 6 4.1388 -3.2435 -1.0452 21 6 2.8931 -3.1851 -1.9316 22 6 2.9866 -4.2221 -0.8096 23 1 -0.4850 0.8400 0.0004 24 1 6.6793 -3.3032 -0.2554 25 1 6.4666 -3.7640 2.1718 26 1 7.2960 -2.2317 2.5353 27 1 8.8740 -4.1415 2.6325 28 1 8.4726 -4.5588 0.9492 29 1 9.6887 -1.9213 1.8882 30 1 10.5648 -3.2329 1.0627 31 1 9.0727 -2.9927 -0.9028 32 1 9.9013 -1.4598 -0.5387 33 1 7.4948 -1.0831 -1.0000 34 1 7.8964 -0.6661 0.6831 35 1 5.0530 -3.6395 -1.4874 36 1 2.2116 -2.3468 -1.7874 37 1 2.9876 -3.5431 -2.9568 38 1 3.1427 -5.2618 -1.0970 39 1 2.3666 -4.0665 0.0733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:33 Heat of formation + Delta-G solvation = 98.090139 kcal Electronic energy + Delta-G solvation = -20180.340193 eV Core-core repulsion = 17317.950302 eV Total energy + Delta-G solvation = -2862.389891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53391 -38.26897 -36.37318 -33.61271 -32.62250 -30.82782 -29.50784 -29.09585 -25.33396 -23.20143 -22.62228 -22.25540 -21.58780 -20.69364 -19.37573 -18.84746 -17.43824 -15.81606 -15.27304 -14.96004 -14.47908 -14.28618 -14.11484 -13.93569 -13.67601 -12.99033 -12.75210 -12.46129 -12.25437 -12.03812 -11.66774 -11.39896 -11.17856 -10.89308 -10.83522 -10.74889 -10.64638 -10.35646 -10.26520 -10.19692 -10.10758 -9.93931 -9.65492 -9.15100 -8.78106 -8.23475 -7.41689 -6.57187 -4.20617 2.54877 3.27680 3.32197 3.44320 3.66234 4.01469 4.46077 4.59780 4.65937 4.74441 4.83935 5.01671 5.18285 5.23007 5.26378 5.40120 5.43111 5.45257 5.54907 5.63074 5.67587 5.77060 5.85437 5.93580 5.96704 6.02437 6.14473 6.15787 6.25889 6.31093 6.35806 6.40682 6.67555 6.86351 6.87521 7.17711 7.25166 7.56899 7.97811 8.46027 8.70756 9.05680 9.81482 10.45265 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.006827 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.695669 B = 4100.513088 C = 4752.111760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.104 3.896 3 Si 0.859 3.141 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.196 1.196 7 C -0.457 4.457 8 H 0.104 0.896 9 C 0.130 3.870 10 N -0.285 5.285 11 N -0.120 5.120 12 N -0.363 5.363 13 C 0.169 3.831 14 C -0.125 4.125 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.126 4.126 19 C -0.047 4.047 20 C -0.064 4.064 21 C -0.179 4.179 22 C -0.176 4.176 23 H 0.278 0.722 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.673 -7.321 -1.946 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.113 4.113 3 Si 0.683 3.317 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.118 1.118 7 C -0.492 4.492 8 H 0.121 0.879 9 C -0.001 4.001 10 N -0.157 5.157 11 N -0.095 5.095 12 N -0.157 5.157 13 C 0.065 3.935 14 C -0.164 4.164 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.153 4.153 18 C -0.165 4.165 19 C -0.179 4.179 20 C -0.085 4.085 21 C -0.216 4.216 22 C -0.214 4.214 23 H 0.088 0.912 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.043 -6.195 -0.867 16.291 hybrid contribution -0.093 -0.058 -0.855 0.862 sum 14.949 -6.253 -1.722 16.295 Atomic orbital electron populations 1.69764 1.07809 1.29416 1.38834 1.25651 0.94317 1.00850 0.90500 0.86982 0.84581 0.80590 0.79501 1.20852 1.21391 1.11778 1.18394 0.91320 0.96547 1.42935 0.87861 1.19104 0.94727 0.91866 0.94394 1.74985 1.00815 1.23329 1.16561 1.81342 1.11551 1.01731 1.14845 1.49557 1.07637 1.25279 1.33213 1.21060 0.80445 0.94120 0.97890 1.21859 0.96811 1.00868 0.96833 1.21504 0.94441 0.97988 1.01344 1.21579 0.98153 0.98996 0.97187 1.21495 0.96345 1.00025 0.97406 1.21864 0.93904 0.98541 1.02194 1.20872 0.86712 1.06189 1.04135 1.19726 0.92902 0.96630 0.99241 1.23524 1.01211 1.03140 0.93699 1.22926 1.02337 0.94136 1.02017 0.91208 0.89183 0.91530 0.90583 0.91604 0.91896 0.91711 0.91996 0.91898 0.91607 0.91552 0.90561 0.89040 0.84199 0.90149 0.89911 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.28 13.94 55.54 0.77 -22.51 16 2 C 0.10 2.86 5.50 -17.35 -0.10 2.76 16 3 Si 0.86 21.62 27.52 -169.99 -4.68 16.94 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.20 -5.10 5.06 56.52 0.29 -4.82 16 7 C -0.46 -12.39 7.64 -37.79 -0.29 -12.68 16 8 H 0.10 2.81 5.19 -52.48 -0.27 2.54 16 9 C 0.13 3.38 5.82 -85.02 -0.50 2.88 16 10 N -0.29 -7.62 8.66 32.05 0.28 -7.35 16 11 N -0.12 -2.88 13.62 60.35 0.82 -2.06 16 12 N -0.36 -7.53 3.29 -49.74 -0.16 -7.70 16 13 C 0.17 2.60 2.96 -67.93 -0.20 2.40 16 14 C -0.13 -1.71 5.48 -26.73 -0.15 -1.86 16 15 C -0.11 -1.16 5.92 -26.73 -0.16 -1.32 16 16 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 17 C -0.11 -1.16 5.92 -26.76 -0.16 -1.32 16 18 C -0.13 -1.74 5.47 -26.76 -0.15 -1.89 16 19 C -0.05 -1.06 6.76 -80.90 -0.55 -1.61 16 20 C -0.06 -1.20 5.91 -91.78 -0.54 -1.74 16 21 C -0.18 -3.29 9.55 -26.70 -0.25 -3.54 16 22 C -0.18 -3.09 9.74 -26.70 -0.26 -3.35 16 23 H 0.28 7.26 8.30 -40.82 -0.34 6.92 16 24 H 0.09 1.27 6.76 -51.93 -0.35 0.92 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 36 H 0.14 3.06 4.73 -51.93 -0.25 2.82 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.10 1.96 7.56 -51.93 -0.39 1.56 16 LS Contribution 306.28 15.07 4.62 4.62 Total: -1.00 -30.09 306.28 -7.76 -37.85 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.96 Total: 2.77 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -3.45 Total: -22.56 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 1.71 Total: -39.61 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.68 Total: 16.94 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.09 -7.76 -37.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.942 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds