Wall clock time and date at job start Mon Mar 30 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30982 * 1 3 3 Si 1.86807 * 119.99819 * 2 1 4 4 H 1.48499 * 109.47190 * 264.70939 * 3 2 1 5 5 H 1.48500 * 109.46990 * 24.70889 * 3 2 1 6 6 H 1.48500 * 109.46832 * 144.71239 * 3 2 1 7 7 C 1.39737 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99541 * 19.49289 * 7 2 1 9 9 C 1.41484 * 120.00410 * 199.48930 * 7 2 1 10 10 N 1.34844 * 126.02053 * 29.20515 * 9 7 2 11 11 N 1.28673 * 109.63398 * 179.97438 * 10 9 7 12 12 N 1.40119 * 108.93949 * 0.02562 * 11 10 9 13 13 C 1.46498 * 126.49711 * 179.97438 * 12 11 10 14 14 C 1.53007 * 109.46715 * 60.02766 * 13 12 11 15 15 C 1.52997 * 109.47106 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47211 * 59.99504 * 15 14 13 17 17 C 1.52997 * 109.47423 * 300.00234 * 16 15 14 18 18 C 1.52996 * 109.47405 * 300.02787 * 13 12 11 19 19 C 1.35029 * 107.01124 * 0.23870 * 12 11 10 20 20 C 1.50700 * 126.76976 * 179.74408 * 19 12 11 21 21 C 1.52991 * 117.49841 * 196.65905 * 20 19 12 22 22 C 1.52995 * 117.50012 * 127.99948 * 20 19 12 23 23 H 0.96996 * 120.00449 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47438 * 180.02562 * 13 12 11 25 25 H 1.08990 * 109.47176 * 59.99695 * 14 13 12 26 26 H 1.08999 * 109.46608 * 299.99824 * 14 13 12 27 27 H 1.08994 * 109.47421 * 179.97438 * 15 14 13 28 28 H 1.09001 * 109.46859 * 299.99827 * 15 14 13 29 29 H 1.09001 * 109.46945 * 60.00376 * 16 15 14 30 30 H 1.09005 * 109.47276 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.47175 * 300.00001 * 17 16 15 32 32 H 1.08998 * 109.47439 * 179.97438 * 17 16 15 33 33 H 1.09004 * 109.46947 * 299.99933 * 18 13 12 34 34 H 1.08999 * 109.47398 * 59.99269 * 18 13 12 35 35 H 1.09002 * 115.55251 * 342.32576 * 20 19 12 36 36 H 1.09002 * 117.50083 * 0.02562 * 21 20 19 37 37 H 1.09003 * 117.50325 * 145.01912 * 21 20 19 38 38 H 1.08997 * 117.49818 * 214.97951 * 22 20 19 39 39 H 1.09000 * 117.50046 * 359.97310 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 2.6031 1.9820 -1.3941 5 1 1.3898 2.6824 0.5852 6 1 3.4810 1.4751 0.8088 7 6 2.0086 -1.2101 0.0005 8 1 1.5150 -2.1188 -0.3112 9 6 3.3626 -1.2450 0.4093 10 7 3.9442 -0.4147 1.2986 11 7 5.1845 -0.7284 1.4359 12 7 5.4720 -1.8206 0.6066 13 6 6.7681 -2.4879 0.4625 14 6 7.2071 -3.0471 1.8174 15 6 8.5611 -3.7435 1.6673 16 6 9.6002 -2.7366 1.1701 17 6 9.1612 -2.1775 -0.1847 18 6 7.8076 -1.4815 -0.0348 19 6 4.3293 -2.1377 -0.0392 20 6 4.1388 -3.2435 -1.0452 21 6 2.8931 -3.1851 -1.9316 22 6 2.9866 -4.2221 -0.8096 23 1 -0.4850 0.8400 0.0004 24 1 6.6793 -3.3032 -0.2554 25 1 6.4666 -3.7640 2.1718 26 1 7.2960 -2.2317 2.5353 27 1 8.8740 -4.1415 2.6325 28 1 8.4726 -4.5588 0.9492 29 1 9.6887 -1.9213 1.8882 30 1 10.5648 -3.2329 1.0627 31 1 9.0727 -2.9927 -0.9028 32 1 9.9013 -1.4598 -0.5387 33 1 7.4948 -1.0831 -1.0000 34 1 7.8964 -0.6661 0.6831 35 1 5.0530 -3.6395 -1.4874 36 1 2.2116 -2.3468 -1.7874 37 1 2.9876 -3.5431 -2.9568 38 1 3.1427 -5.2618 -1.0970 39 1 2.3666 -4.0665 0.0733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:32 Heat of formation + Delta-G solvation = 80.541514 kcal Electronic energy + Delta-G solvation = -20181.101159 eV Core-core repulsion = 17317.950302 eV Total energy + Delta-G solvation = -2863.150856 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.31932 -39.37633 -37.90958 -35.41541 -34.29540 -31.78955 -31.37924 -30.47916 -27.18854 -24.63959 -23.90495 -23.58102 -23.03528 -22.09297 -20.71282 -20.45947 -19.17626 -17.46362 -16.91539 -16.37371 -16.06366 -15.66799 -15.24815 -15.10467 -15.03498 -14.79898 -14.20930 -13.86044 -13.63979 -13.28760 -13.21375 -12.89683 -12.68083 -12.41136 -12.39430 -12.12679 -11.90423 -11.83192 -11.77936 -11.50066 -11.34661 -11.30210 -11.19743 -11.05806 -10.56545 -10.07092 -9.32024 -8.63683 -6.25548 0.76738 1.25121 1.37137 1.62651 1.76796 2.00933 2.43350 3.10346 3.32136 3.48646 3.70251 3.77244 3.94700 4.06591 4.11930 4.21215 4.23309 4.29528 4.39013 4.47299 4.51823 4.56691 4.69928 4.74332 4.92815 4.96597 5.04102 5.04412 5.15313 5.18085 5.18300 5.27517 5.31718 5.33727 5.45611 5.53868 5.61392 5.69215 6.29341 6.36202 6.70339 7.01714 7.92509 8.43147 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.006827 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.695669 B = 4100.513088 C = 4752.111760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.212 1.212 7 C -0.464 4.464 8 H 0.092 0.908 9 C 0.093 3.907 10 N -0.322 5.322 11 N -0.146 5.146 12 N -0.346 5.346 13 C 0.153 3.847 14 C -0.120 4.120 15 C -0.107 4.107 16 C -0.121 4.121 17 C -0.107 4.107 18 C -0.122 4.122 19 C -0.021 4.021 20 C -0.076 4.076 21 C -0.180 4.180 22 C -0.159 4.159 23 H 0.281 0.719 24 H 0.117 0.883 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.856 -9.878 -3.357 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.135 1.135 7 C -0.501 4.501 8 H 0.110 0.890 9 C -0.041 4.041 10 N -0.191 5.191 11 N -0.120 5.120 12 N -0.139 5.139 13 C 0.052 3.948 14 C -0.159 4.159 15 C -0.144 4.144 16 C -0.158 4.158 17 C -0.144 4.144 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.096 4.096 21 C -0.218 4.218 22 C -0.197 4.197 23 H 0.091 0.909 24 H 0.135 0.865 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.286 -8.740 -2.250 20.392 hybrid contribution -0.899 0.559 -0.431 1.143 sum 17.387 -8.181 -2.681 19.402 Atomic orbital electron populations 1.69794 1.08420 1.29935 1.41744 1.26110 0.94768 1.02657 0.90916 0.86297 0.83075 0.78807 0.78946 1.20773 1.20906 1.13473 1.18413 0.92131 0.96170 1.43359 0.89004 1.19325 0.95317 0.93774 0.95682 1.74920 1.01916 1.24663 1.17608 1.81252 1.10757 1.03499 1.16518 1.50073 1.09134 1.23860 1.30803 1.21715 0.78300 0.94970 0.99831 1.21825 0.99000 1.00058 0.95008 1.21497 0.91930 0.98194 1.02823 1.21597 0.99137 0.98696 0.96371 1.21489 0.93910 1.00615 0.98432 1.21839 0.95678 0.97836 1.00729 1.21580 0.86321 1.04882 1.02794 1.20061 0.94955 0.95929 0.98648 1.23456 0.99892 1.02476 0.95928 1.22941 1.00278 0.96085 1.00397 0.90883 0.86498 0.92613 0.92840 0.90314 0.89934 0.92749 0.89289 0.89909 0.90322 0.92560 0.92826 0.84846 0.88198 0.86381 0.85473 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.69 13.94 21.79 0.30 -50.38 16 2 C 0.07 3.89 5.50 85.18 0.47 4.36 16 3 Si 0.90 46.54 27.52 68.60 1.89 48.43 16 4 H -0.28 -14.16 7.11 99.48 0.71 -13.46 16 5 H -0.28 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.21 -11.42 5.06 99.48 0.50 -10.92 16 7 C -0.46 -26.17 7.64 23.43 0.18 -25.99 16 8 H 0.09 5.24 5.19 -2.91 -0.02 5.22 16 9 C 0.09 4.93 5.82 39.67 0.23 5.16 16 10 N -0.32 -17.73 8.66 -52.52 -0.45 -18.18 16 11 N -0.15 -7.16 13.62 37.02 0.50 -6.66 16 12 N -0.35 -14.08 3.29 -311.27 -1.02 -15.11 16 13 C 0.15 4.33 2.96 44.99 0.13 4.46 16 14 C -0.12 -3.05 5.48 30.60 0.17 -2.88 16 15 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 16 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 17 C -0.11 -1.72 5.92 30.58 0.18 -1.54 16 18 C -0.12 -3.10 5.47 30.58 0.17 -2.93 16 19 C -0.02 -0.92 6.76 42.25 0.29 -0.63 16 20 C -0.08 -2.57 5.91 -11.54 -0.07 -2.64 16 21 C -0.18 -6.24 9.55 30.61 0.29 -5.95 16 22 C -0.16 -5.14 9.74 30.61 0.30 -4.84 16 23 H 0.28 15.29 8.30 -92.71 -0.77 14.52 16 24 H 0.12 2.73 6.76 -2.39 -0.02 2.71 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.13 3.47 7.15 -2.39 -0.02 3.45 16 36 H 0.10 4.41 4.73 -2.39 -0.01 4.40 16 37 H 0.12 3.19 8.14 -2.39 -0.02 3.18 16 38 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.07 2.63 7.56 -2.39 -0.02 2.61 16 Total: -1.00 -69.59 306.28 4.75 -64.84 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.84 Total: 13.63 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 2.70 Total: -36.57 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -0.67 Total: -90.33 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.89 Total: 48.43 kcal Total: -69.59 4.75 -64.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.378 kcal (2) G-P(sol) polarization free energy of solvation -69.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds