Wall clock time and date at job start Mon Mar 30 2020 06:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30990 * 1 3 3 Si 1.86794 * 120.00008 * 2 1 4 4 H 1.48497 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47376 * 300.00133 * 3 2 1 6 6 H 1.48503 * 109.47193 * 60.00062 * 3 2 1 7 7 C 1.39738 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99528 * 179.97438 * 7 2 1 9 9 C 1.41491 * 120.00433 * 359.97438 * 7 2 1 10 10 N 1.34842 * 126.01896 * 359.96210 * 9 7 2 11 11 N 1.28670 * 109.63303 * 179.78373 * 10 9 7 12 12 N 1.40126 * 108.93360 * 0.39142 * 11 10 9 13 13 C 1.46501 * 126.49254 * 179.87334 * 12 11 10 14 14 C 1.52995 * 109.47289 * 269.69037 * 13 12 11 15 15 C 1.53003 * 109.47289 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.51964 * 116.28130 * 15 14 13 17 17 C 1.52999 * 60.00190 * 107.47982 * 16 15 14 18 18 C 1.35018 * 107.01451 * 359.61007 * 12 11 10 19 19 C 1.50705 * 126.76730 * 180.24752 * 18 12 11 20 20 C 1.52999 * 109.46937 * 90.00628 * 19 18 12 21 21 C 1.53002 * 117.49263 * 243.73981 * 20 19 18 22 22 C 1.53002 * 117.49794 * 175.08516 * 20 19 18 23 23 H 0.97002 * 119.99734 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47292 * 149.68364 * 13 12 11 25 25 H 1.09005 * 109.46856 * 29.68644 * 13 12 11 26 26 H 1.08999 * 109.47504 * 59.99456 * 14 13 12 27 27 H 1.09005 * 109.46851 * 299.99610 * 14 13 12 28 28 H 1.09002 * 115.54973 * 330.57913 * 15 14 13 29 29 H 1.09001 * 117.49733 * 214.97413 * 16 15 14 30 30 H 1.08995 * 117.49577 * 359.97438 * 16 15 14 31 31 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 32 32 H 1.09004 * 117.49681 * 107.48417 * 17 16 15 33 33 H 1.09005 * 109.46568 * 210.00117 * 19 18 12 34 34 H 1.08995 * 109.47721 * 329.99611 * 19 18 12 35 35 H 1.08991 * 115.55524 * 29.41203 * 20 19 18 36 36 H 1.08998 * 117.50087 * 0.02562 * 21 20 19 37 37 H 1.09004 * 117.49686 * 145.02222 * 21 20 19 38 38 H 1.08996 * 117.50044 * 214.97650 * 22 20 19 39 39 H 1.08998 * 117.49724 * 359.97045 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 3.7038 1.3463 0.0006 5 1 1.8851 2.3965 -1.2125 6 1 1.8851 2.3964 1.2125 7 6 2.0085 -1.2102 0.0005 8 1 3.0886 -1.2102 0.0001 9 6 1.3010 -2.4356 0.0016 10 7 -0.0399 -2.5770 0.0030 11 7 -0.3428 -3.8275 -0.0009 12 7 0.8383 -4.5814 0.0040 13 6 0.9391 -6.0429 0.0045 14 6 0.9760 -6.5511 1.4471 15 6 1.0819 -8.0775 1.4476 16 6 2.3453 -8.6983 2.0472 17 6 1.0165 -8.7897 2.8002 18 6 1.8660 -3.7057 0.0022 19 6 3.3356 -4.0395 0.0007 20 6 3.8312 -4.1532 -1.4423 21 6 4.3428 -5.5179 -1.9080 22 6 5.3295 -4.3744 -1.6593 23 1 -0.4850 0.8401 -0.0004 24 1 1.8512 -6.3445 -0.5105 25 1 0.0755 -6.4668 -0.5080 26 1 0.0639 -6.2496 1.9621 27 1 1.8397 -6.1273 1.9596 28 1 0.6316 -8.5803 0.5918 29 1 2.7260 -9.6095 1.5858 30 1 3.1014 -8.0193 2.4411 31 1 0.8984 -8.1708 3.6897 32 1 0.5230 -9.7611 2.8341 33 1 3.8876 -3.2517 0.5134 34 1 3.4935 -4.9874 0.5150 35 1 3.3027 -3.5385 -2.1708 36 1 4.3258 -6.3347 -1.1864 37 1 4.1510 -5.8009 -2.9430 38 1 5.7865 -3.9056 -2.5307 39 1 5.9622 -4.4385 -0.7740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545647.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:06 Heat of formation + Delta-G solvation = 121.598237 kcal Electronic energy + Delta-G solvation = -19507.379633 eV Core-core repulsion = 16646.009130 eV Total energy + Delta-G solvation = -2861.370503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.00457 -37.69565 -37.03396 -34.02107 -32.93763 -30.88231 -29.15926 -27.09399 -24.62738 -23.75261 -22.44291 -22.12038 -20.57366 -20.38718 -20.18752 -18.86787 -17.08720 -15.76500 -15.61527 -14.87806 -14.71542 -14.44951 -14.11059 -13.74554 -13.49898 -13.06319 -12.66097 -12.13926 -11.97287 -11.65855 -11.39399 -11.31718 -11.28922 -11.13627 -11.02564 -10.89751 -10.75512 -10.40941 -10.23493 -10.03485 -9.91364 -9.62562 -9.46422 -9.24477 -8.79095 -8.35757 -7.34535 -6.31886 -4.10696 2.85484 3.18328 3.23877 3.27801 3.62767 3.76221 4.15292 4.17708 4.36202 4.68711 4.84892 4.87460 5.09917 5.16050 5.26145 5.29139 5.35502 5.54026 5.59714 5.61296 5.66269 5.77658 5.81574 5.86317 5.95143 6.02579 6.06373 6.12242 6.15888 6.32927 6.34468 6.38659 6.49013 6.76846 7.00339 7.20479 7.48071 7.58075 8.23226 8.49066 8.88681 9.14473 10.27572 10.65069 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.005913 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.426778 B = 4734.257305 C = 5691.844033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.153 3.847 10 N -0.230 5.230 11 N -0.135 5.135 12 N -0.374 5.374 13 C 0.143 3.857 14 C -0.103 4.103 15 C -0.147 4.147 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.109 4.109 19 C 0.016 3.984 20 C -0.130 4.130 21 C -0.190 4.190 22 C -0.185 4.185 23 H 0.270 0.730 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.462 -13.021 0.888 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.023 3.977 10 N -0.102 5.102 11 N -0.111 5.111 12 N -0.170 5.170 13 C 0.018 3.982 14 C -0.142 4.142 15 C -0.166 4.166 16 C -0.218 4.218 17 C -0.218 4.218 18 C -0.240 4.240 19 C -0.023 4.023 20 C -0.149 4.149 21 C -0.227 4.227 22 C -0.222 4.222 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.672 -12.934 0.883 14.151 hybrid contribution 1.488 0.624 -0.048 1.614 sum 7.160 -12.310 0.835 14.266 Atomic orbital electron populations 1.70035 1.06762 1.27543 1.36071 1.25771 0.94770 1.00426 0.93598 0.86338 0.80572 0.82016 0.78140 1.18757 1.20313 1.20322 1.18561 0.93509 0.87921 1.48537 0.90089 1.18989 0.87577 0.91704 0.99418 1.75094 1.14311 1.05441 1.15329 1.81491 1.05404 0.98684 1.25475 1.49465 1.06314 1.05183 1.55999 1.21311 1.02755 0.77431 0.96657 1.21573 1.03196 0.92050 0.97374 1.22231 1.02135 0.94924 0.97301 1.23042 0.91389 1.02901 1.04473 1.22948 1.01007 1.02005 0.95822 1.21262 0.89844 0.90418 1.22468 1.19159 0.89650 1.00335 0.93183 1.22466 0.95022 0.98313 0.99118 1.23013 1.05592 0.92460 1.01644 1.22925 0.93209 1.03166 1.02889 0.91917 0.90094 0.90037 0.90802 0.91356 0.87637 0.89007 0.88782 0.88830 0.88954 0.90052 0.93043 0.87537 0.89345 0.89564 0.89306 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.31 11.92 55.54 0.66 -21.65 16 2 C 0.07 1.96 5.49 -17.35 -0.10 1.86 16 3 Si 0.90 19.78 29.56 -169.99 -5.02 14.76 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.45 -12.27 9.11 -37.78 -0.34 -12.61 16 8 H 0.08 2.06 7.30 -52.48 -0.38 1.68 16 9 C 0.15 4.23 6.72 -85.02 -0.57 3.66 16 10 N -0.23 -6.76 10.55 32.05 0.34 -6.42 16 11 N -0.13 -3.56 13.74 60.35 0.83 -2.73 16 12 N -0.37 -8.22 3.63 -56.17 -0.20 -8.42 16 13 C 0.14 2.30 6.11 -4.04 -0.02 2.27 16 14 C -0.10 -1.46 5.82 -26.73 -0.16 -1.62 16 15 C -0.15 -1.62 5.73 -90.61 -0.52 -2.14 16 16 C -0.18 -1.77 10.18 -26.73 -0.27 -2.04 16 17 C -0.18 -1.80 10.25 -26.73 -0.27 -2.08 16 18 C -0.11 -2.50 6.32 -80.90 -0.51 -3.01 16 19 C 0.02 0.30 5.36 -27.88 -0.15 0.15 16 20 C -0.13 -2.15 5.72 -90.62 -0.52 -2.67 16 21 C -0.19 -2.52 10.18 -26.69 -0.27 -2.79 16 22 C -0.18 -2.47 10.25 -26.69 -0.27 -2.74 16 23 H 0.27 7.11 8.30 -40.82 -0.34 6.78 16 24 H 0.08 1.17 7.78 -51.93 -0.40 0.77 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 28 H 0.11 1.06 8.08 -51.93 -0.42 0.64 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.52 7.56 -51.93 -0.39 1.13 16 34 H 0.05 0.82 7.58 -51.93 -0.39 0.43 16 35 H 0.11 2.03 8.07 -51.93 -0.42 1.61 16 36 H 0.09 1.07 8.03 -51.93 -0.42 0.66 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -31.40 331.72 -8.55 -39.95 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.17 Total: 3.28 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -3.98 Total: -23.76 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 1.63 Total: -39.23 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.40 -8.55 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545647.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.552 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds