Wall clock time and date at job start Mon Mar 30 2020 06:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30990 * 1 3 3 Si 1.86794 * 120.00008 * 2 1 4 4 H 1.48497 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47376 * 300.00133 * 3 2 1 6 6 H 1.48503 * 109.47193 * 60.00062 * 3 2 1 7 7 C 1.39738 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99528 * 179.97438 * 7 2 1 9 9 C 1.41491 * 120.00433 * 359.97438 * 7 2 1 10 10 N 1.34842 * 126.01896 * 359.96210 * 9 7 2 11 11 N 1.28670 * 109.63303 * 179.78373 * 10 9 7 12 12 N 1.40126 * 108.93360 * 0.39142 * 11 10 9 13 13 C 1.46501 * 126.49254 * 179.87334 * 12 11 10 14 14 C 1.52995 * 109.47289 * 269.69037 * 13 12 11 15 15 C 1.53003 * 109.47289 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.51964 * 116.28130 * 15 14 13 17 17 C 1.52999 * 60.00190 * 107.47982 * 16 15 14 18 18 C 1.35018 * 107.01451 * 359.61007 * 12 11 10 19 19 C 1.50705 * 126.76730 * 180.24752 * 18 12 11 20 20 C 1.52999 * 109.46937 * 90.00628 * 19 18 12 21 21 C 1.53002 * 117.49263 * 243.73981 * 20 19 18 22 22 C 1.53002 * 117.49794 * 175.08516 * 20 19 18 23 23 H 0.97002 * 119.99734 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47292 * 149.68364 * 13 12 11 25 25 H 1.09005 * 109.46856 * 29.68644 * 13 12 11 26 26 H 1.08999 * 109.47504 * 59.99456 * 14 13 12 27 27 H 1.09005 * 109.46851 * 299.99610 * 14 13 12 28 28 H 1.09002 * 115.54973 * 330.57913 * 15 14 13 29 29 H 1.09001 * 117.49733 * 214.97413 * 16 15 14 30 30 H 1.08995 * 117.49577 * 359.97438 * 16 15 14 31 31 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 32 32 H 1.09004 * 117.49681 * 107.48417 * 17 16 15 33 33 H 1.09005 * 109.46568 * 210.00117 * 19 18 12 34 34 H 1.08995 * 109.47721 * 329.99611 * 19 18 12 35 35 H 1.08991 * 115.55524 * 29.41203 * 20 19 18 36 36 H 1.08998 * 117.50087 * 0.02562 * 21 20 19 37 37 H 1.09004 * 117.49686 * 145.02222 * 21 20 19 38 38 H 1.08996 * 117.50044 * 214.97650 * 22 20 19 39 39 H 1.08998 * 117.49724 * 359.97045 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 3.7038 1.3463 0.0006 5 1 1.8851 2.3965 -1.2125 6 1 1.8851 2.3964 1.2125 7 6 2.0085 -1.2102 0.0005 8 1 3.0886 -1.2102 0.0001 9 6 1.3010 -2.4356 0.0016 10 7 -0.0399 -2.5770 0.0030 11 7 -0.3428 -3.8275 -0.0009 12 7 0.8383 -4.5814 0.0040 13 6 0.9391 -6.0429 0.0045 14 6 0.9760 -6.5511 1.4471 15 6 1.0819 -8.0775 1.4476 16 6 2.3453 -8.6983 2.0472 17 6 1.0165 -8.7897 2.8002 18 6 1.8660 -3.7057 0.0022 19 6 3.3356 -4.0395 0.0007 20 6 3.8312 -4.1532 -1.4423 21 6 4.3428 -5.5179 -1.9080 22 6 5.3295 -4.3744 -1.6593 23 1 -0.4850 0.8401 -0.0004 24 1 1.8512 -6.3445 -0.5105 25 1 0.0755 -6.4668 -0.5080 26 1 0.0639 -6.2496 1.9621 27 1 1.8397 -6.1273 1.9596 28 1 0.6316 -8.5803 0.5918 29 1 2.7260 -9.6095 1.5858 30 1 3.1014 -8.0193 2.4411 31 1 0.8984 -8.1708 3.6897 32 1 0.5230 -9.7611 2.8341 33 1 3.8876 -3.2517 0.5134 34 1 3.4935 -4.9874 0.5150 35 1 3.3027 -3.5385 -2.1708 36 1 4.3258 -6.3347 -1.1864 37 1 4.1510 -5.8009 -2.9430 38 1 5.7865 -3.9056 -2.5307 39 1 5.9622 -4.4385 -0.7740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545647.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:06 Heat of formation + Delta-G solvation = 103.686701 kcal Electronic energy + Delta-G solvation = -19508.156335 eV Core-core repulsion = 16646.009130 eV Total energy + Delta-G solvation = -2862.147206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.89766 -38.64795 -38.25488 -35.72286 -34.74563 -32.55820 -30.77686 -28.79280 -26.49934 -25.22942 -23.20449 -23.15562 -22.19822 -21.83495 -21.38744 -20.51780 -18.98702 -17.13328 -16.80212 -16.64719 -16.10401 -15.87507 -15.39729 -15.03899 -14.81786 -14.64917 -14.34227 -13.59927 -13.40752 -12.90166 -12.86797 -12.81317 -12.51278 -12.41136 -12.28748 -12.26812 -12.20669 -12.02752 -11.60632 -11.32552 -11.18229 -11.11036 -10.83793 -10.77208 -10.62628 -10.18284 -9.33277 -8.28261 -6.16144 1.01281 1.43536 1.43961 1.59601 2.01704 2.34880 2.35202 2.90804 3.01624 3.53333 3.69581 3.83482 3.88337 3.98198 4.07930 4.10341 4.16565 4.27008 4.34002 4.39481 4.57199 4.59208 4.79251 4.82189 4.83394 4.85757 4.96999 5.01724 5.07017 5.08246 5.15985 5.28774 5.30557 5.35472 5.35924 5.46118 5.55707 5.67066 6.42710 6.48118 6.92027 7.12038 8.31547 8.71805 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.005913 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.426778 B = 4734.257305 C = 5691.844033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.019 3.981 3 Si 0.983 3.017 4 H -0.248 1.248 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.476 4.476 8 H 0.091 0.909 9 C 0.104 3.896 10 N -0.285 5.285 11 N -0.178 5.178 12 N -0.356 5.356 13 C 0.130 3.870 14 C -0.091 4.091 15 C -0.156 4.156 16 C -0.168 4.168 17 C -0.182 4.182 18 C -0.071 4.071 19 C 0.021 3.979 20 C -0.164 4.164 21 C -0.168 4.168 22 C -0.165 4.165 23 H 0.271 0.729 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.632 -15.508 0.781 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.171 1.171 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.513 4.513 8 H 0.109 0.891 9 C -0.029 4.029 10 N -0.153 5.153 11 N -0.153 5.153 12 N -0.150 5.150 13 C 0.009 3.991 14 C -0.130 4.130 15 C -0.174 4.174 16 C -0.205 4.205 17 C -0.219 4.219 18 C -0.207 4.207 19 C -0.019 4.019 20 C -0.183 4.183 21 C -0.205 4.205 22 C -0.202 4.202 23 H 0.081 0.919 24 H 0.128 0.872 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.805 -15.491 0.777 17.835 hybrid contribution 0.591 1.128 -0.016 1.273 sum 9.396 -14.363 0.762 17.180 Atomic orbital electron populations 1.70203 1.08798 1.28422 1.38518 1.26747 0.95526 1.04310 0.92777 0.85138 0.79612 0.76712 0.78032 1.17142 1.20023 1.19966 1.18908 0.94019 0.88683 1.49703 0.89130 1.19600 0.87787 0.93854 1.01702 1.75031 1.15746 1.06908 1.17651 1.81361 1.06915 0.98429 1.28601 1.49942 1.05185 1.07413 1.52454 1.21866 1.04721 0.73798 0.98730 1.21397 1.01687 0.94717 0.95182 1.22118 1.04249 0.92345 0.98713 1.23133 0.90771 1.03263 1.03336 1.23036 1.01650 1.02395 0.94810 1.22084 0.92220 0.89403 1.16952 1.19294 0.85836 1.01625 0.95129 1.22108 0.97874 1.01466 0.96840 1.23146 1.03276 0.91443 1.02645 1.23039 0.91101 1.02213 1.03888 0.91935 0.87178 0.88938 0.93309 0.91957 0.86209 0.86950 0.88911 0.89669 0.87300 0.90567 0.89888 0.91081 0.87198 0.88643 0.88406 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.41 11.92 21.80 0.26 -50.15 16 2 C 0.02 1.09 5.49 85.18 0.47 1.55 16 3 Si 0.98 41.82 29.56 68.60 2.03 43.85 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.48 -27.00 9.11 23.43 0.21 -26.79 16 8 H 0.09 4.71 7.30 -2.91 -0.02 4.69 16 9 C 0.10 5.98 6.72 39.67 0.27 6.25 16 10 N -0.28 -17.73 10.55 -52.52 -0.55 -18.28 16 11 N -0.18 -9.86 13.74 37.02 0.51 -9.36 16 12 N -0.36 -15.75 3.63 -331.64 -1.20 -16.96 16 13 C 0.13 3.97 6.11 86.38 0.53 4.50 16 14 C -0.09 -2.44 5.82 30.59 0.18 -2.26 16 15 C -0.16 -2.96 5.73 -10.79 -0.06 -3.02 16 16 C -0.17 -2.62 10.18 30.59 0.31 -2.31 16 17 C -0.18 -3.12 10.25 30.60 0.31 -2.81 16 18 C -0.07 -3.29 6.32 42.26 0.27 -3.02 16 19 C 0.02 0.71 5.36 29.85 0.16 0.87 16 20 C -0.16 -5.05 5.72 -10.79 -0.06 -5.12 16 21 C -0.17 -3.72 10.18 30.62 0.31 -3.41 16 22 C -0.17 -3.77 10.25 30.62 0.31 -3.46 16 23 H 0.27 15.14 8.30 -92.71 -0.77 14.37 16 24 H 0.11 2.77 7.78 -2.39 -0.02 2.75 16 25 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.74 7.88 -2.38 -0.02 1.72 16 28 H 0.12 1.98 8.08 -2.39 -0.02 1.96 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.50 8.03 -2.39 -0.02 1.48 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.08 2.74 7.56 -2.38 -0.02 2.72 16 34 H 0.08 2.34 7.58 -2.39 -0.02 2.32 16 35 H 0.07 2.72 8.07 -2.39 -0.02 2.70 16 36 H 0.11 2.00 8.03 -2.39 -0.02 1.98 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -74.25 331.72 5.27 -68.98 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 1.02 Total: 20.94 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 3.21 Total: -39.03 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -0.99 Total: -94.75 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -74.25 5.27 -68.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545647.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.667 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds