Wall clock time and date at job start Mon Mar 30 2020 06:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30984 * 1 3 3 Si 1.86794 * 120.00339 * 2 1 4 4 H 1.48498 * 109.46870 * 270.00015 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99794 * 3 2 1 6 6 H 1.48498 * 109.47634 * 150.00030 * 3 2 1 7 7 C 1.39745 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.41488 * 120.00140 * 0.27930 * 7 2 1 10 10 N 1.34850 * 126.01927 * 359.74857 * 9 7 2 11 11 N 1.28666 * 109.63254 * 179.97438 * 10 9 7 12 12 N 1.40118 * 108.93799 * 359.97438 * 11 10 9 13 13 C 1.46508 * 126.49378 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.46866 * 89.97620 * 13 12 11 15 15 C 1.52996 * 117.49694 * 243.74730 * 14 13 12 16 16 C 1.53000 * 117.49554 * 175.08568 * 14 13 12 17 17 C 1.35021 * 107.01685 * 359.75384 * 12 11 10 18 18 C 1.50697 * 126.77705 * 180.23865 * 17 12 11 19 19 C 1.54267 * 110.03101 * 238.10847 * 18 17 12 20 20 C 1.54962 * 104.15945 * 217.13440 * 19 18 17 21 21 C 1.54889 * 102.77734 * 37.88741 * 20 19 18 22 22 C 1.53872 * 110.03538 * 120.88854 * 18 17 12 23 23 H 0.96996 * 120.00078 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47216 * 209.97683 * 13 12 11 25 25 H 1.08999 * 109.46840 * 329.97490 * 13 12 11 26 26 H 1.09003 * 115.55078 * 29.41945 * 14 13 12 27 27 H 1.08998 * 117.50067 * 359.97438 * 15 14 13 28 28 H 1.08997 * 117.49943 * 145.02301 * 15 14 13 29 29 H 1.08998 * 117.49668 * 214.97695 * 16 14 13 30 30 H 1.08999 * 117.50187 * 359.97438 * 16 14 13 31 31 H 1.09001 * 110.01779 * 359.49456 * 18 17 12 32 32 H 1.09001 * 110.48606 * 335.77979 * 19 18 17 33 33 H 1.08995 * 110.48889 * 98.42402 * 19 18 17 34 34 H 1.09003 * 110.72253 * 279.57399 * 20 19 18 35 35 H 1.08998 * 110.92919 * 156.29416 * 20 19 18 36 36 H 1.08999 * 110.48544 * 203.41117 * 21 20 19 37 37 H 1.08994 * 110.60153 * 80.81862 * 21 20 19 38 38 H 1.09004 * 110.02965 * 238.56831 * 22 18 17 39 39 H 1.09002 * 110.02939 * 359.94897 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2439 1.6176 0.0000 4 1 2.4914 2.0462 -1.4001 5 1 1.4414 2.6526 0.7000 6 1 3.5415 1.4401 0.7000 7 6 2.0085 -1.2103 0.0005 8 1 3.0885 -1.2102 0.0001 9 6 1.3010 -2.4356 -0.0049 10 7 -0.0400 -2.5769 -0.0060 11 7 -0.3429 -3.8274 -0.0119 12 7 0.8382 -4.5814 -0.0156 13 6 0.9389 -6.0430 -0.0220 14 6 0.9729 -6.5455 -1.4668 15 6 -0.1866 -7.4266 -1.9357 16 6 1.1926 -8.0433 -1.6887 17 6 1.8659 -3.7057 -0.0170 18 6 3.3355 -4.0393 -0.0259 19 6 4.0266 -3.4149 1.2038 20 6 5.4121 -2.9674 0.6735 21 6 5.0838 -2.4508 -0.7493 22 6 4.0076 -3.4270 -1.2673 23 1 -0.4850 0.8400 -0.0004 24 1 1.8521 -6.3465 0.4899 25 1 0.0764 -6.4688 0.4907 26 1 1.4096 -5.8597 -2.1929 27 1 -0.9734 -7.6487 -1.2148 28 1 -0.5126 -7.3209 -2.9704 29 1 1.7733 -8.3429 -2.5611 30 1 1.3133 -8.6706 -0.8056 31 1 3.4726 -5.1207 -0.0222 32 1 3.4606 -2.5558 1.5642 33 1 4.1411 -4.1563 1.9945 34 1 6.0992 -3.8125 0.6286 35 1 5.8250 -2.1682 1.2889 36 1 5.9700 -2.4888 -1.3828 37 1 4.6894 -1.4355 -0.7071 38 1 4.4716 -4.2112 -1.8656 39 1 3.2706 -2.8893 -1.8638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:16 Heat of formation + Delta-G solvation = 96.544223 kcal Electronic energy + Delta-G solvation = -20222.560517 eV Core-core repulsion = 17360.103590 eV Total energy + Delta-G solvation = -2862.456927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11647 -37.38067 -37.19803 -33.49961 -32.26601 -30.07824 -28.03871 -27.62118 -26.53490 -24.54104 -22.33493 -21.10039 -20.72492 -20.22715 -19.84593 -18.28755 -17.28037 -15.63010 -15.34391 -14.87174 -14.63905 -14.51358 -14.24605 -13.30911 -13.23546 -12.68104 -12.46356 -12.40225 -11.51813 -11.49563 -11.37043 -11.10530 -11.05989 -10.85443 -10.58661 -10.53546 -10.45614 -10.42708 -10.16461 -10.04324 -9.98208 -9.73090 -9.44825 -9.21023 -8.73957 -8.34758 -7.28472 -6.30249 -4.07718 2.87637 3.18848 3.23404 3.25270 3.59408 3.93270 4.17707 4.37659 4.82152 4.95256 5.05512 5.23454 5.27504 5.33944 5.46212 5.59102 5.62510 5.63762 5.77818 5.86527 5.93119 6.03081 6.09995 6.13701 6.19666 6.24036 6.30928 6.33739 6.46674 6.51627 6.59883 6.86628 6.92338 7.02938 7.19812 7.23982 7.51514 7.62137 8.24163 8.55104 8.92003 9.16959 10.30295 10.66858 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.007646 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.320738 B = 3661.377117 C = 4697.523420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.072 3.928 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.092 0.908 9 C 0.156 3.844 10 N -0.231 5.231 11 N -0.135 5.135 12 N -0.376 5.376 13 C 0.169 3.831 14 C -0.163 4.163 15 C -0.173 4.173 16 C -0.177 4.177 17 C -0.105 4.105 18 C 0.016 3.984 19 C -0.119 4.119 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.110 4.110 23 H 0.270 0.730 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.925 -9.904 -1.225 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.110 0.890 9 C 0.026 3.974 10 N -0.103 5.103 11 N -0.110 5.110 12 N -0.171 5.171 13 C 0.045 3.955 14 C -0.182 4.182 15 C -0.210 4.210 16 C -0.215 4.215 17 C -0.236 4.236 18 C -0.005 4.005 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.148 4.148 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.110 -9.821 -1.206 11.629 hybrid contribution 1.405 0.631 -0.113 1.544 sum 7.515 -9.190 -1.319 11.945 Atomic orbital electron populations 1.70027 1.06739 1.27525 1.36144 1.25796 0.94730 1.00356 0.93759 0.86487 0.80341 0.82039 0.78811 1.19890 1.20626 1.18821 1.18782 0.94046 0.87641 1.48173 0.89012 1.18914 0.87362 0.91632 0.99518 1.75096 1.14464 1.05448 1.15260 1.81508 1.05302 0.98632 1.25586 1.49447 1.06478 1.04934 1.56203 1.20867 1.02448 0.77849 0.94322 1.22733 1.03828 0.93227 0.98449 1.23010 0.91708 1.03900 1.02430 1.22952 1.00123 0.95230 1.03212 1.21440 0.89615 0.90438 1.22093 1.19674 0.88271 0.97536 0.94988 1.22513 0.95250 1.01384 0.96562 1.22451 0.97047 0.99653 0.96769 1.22410 0.97563 1.00492 0.95622 1.22130 0.97611 0.97794 0.97258 0.91961 0.89964 0.89866 0.87408 0.88617 0.88989 0.88850 0.88770 0.92709 0.89121 0.93156 0.92650 0.92169 0.92950 0.90458 0.93378 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.13 11.92 55.54 0.66 -21.46 16 2 C 0.07 1.91 5.49 -17.35 -0.10 1.81 16 3 Si 0.90 19.54 29.56 -169.99 -5.02 14.51 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.45 -11.86 7.54 -37.78 -0.29 -12.15 16 8 H 0.09 2.21 3.69 -52.49 -0.19 2.01 16 9 C 0.16 4.21 6.25 -85.01 -0.53 3.68 16 10 N -0.23 -6.75 10.56 32.05 0.34 -6.41 16 11 N -0.13 -3.57 13.74 60.35 0.83 -2.74 16 12 N -0.38 -8.31 3.63 -56.17 -0.20 -8.51 16 13 C 0.17 2.78 6.46 -4.03 -0.03 2.75 16 14 C -0.16 -2.38 6.01 -90.62 -0.54 -2.93 16 15 C -0.17 -2.20 10.18 -26.69 -0.27 -2.47 16 16 C -0.18 -1.96 10.26 -26.69 -0.27 -2.24 16 17 C -0.10 -2.38 5.65 -80.90 -0.46 -2.84 16 18 C 0.02 0.30 3.08 -90.66 -0.28 0.02 16 19 C -0.12 -2.07 5.84 -25.03 -0.15 -2.22 16 20 C -0.12 -1.81 6.91 -24.70 -0.17 -1.98 16 21 C -0.12 -1.96 6.25 -25.07 -0.16 -2.12 16 22 C -0.11 -1.90 5.77 -25.61 -0.15 -2.05 16 23 H 0.27 7.10 8.30 -40.82 -0.34 6.76 16 24 H 0.08 1.19 7.18 -51.93 -0.37 0.81 16 25 H 0.08 1.28 7.88 -51.93 -0.41 0.88 16 26 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 27 H 0.10 1.17 8.03 -51.93 -0.42 0.75 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.90 6.93 -51.93 -0.36 0.54 16 32 H 0.09 1.86 6.08 -51.93 -0.32 1.55 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.37 6.24 -51.93 -0.32 1.05 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.54 7.22 -51.93 -0.37 1.17 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -30.88 311.22 -7.80 -38.68 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.71 Total: 3.98 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -3.39 Total: -22.73 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 1.63 Total: -39.13 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.88 -7.80 -38.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.222 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds