Wall clock time and date at job start Mon Mar 30 2020 06:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30984 * 1 3 3 Si 1.86794 * 120.00339 * 2 1 4 4 H 1.48498 * 109.46870 * 270.00015 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99794 * 3 2 1 6 6 H 1.48498 * 109.47634 * 150.00030 * 3 2 1 7 7 C 1.39745 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.41488 * 120.00140 * 0.27930 * 7 2 1 10 10 N 1.34850 * 126.01927 * 359.74857 * 9 7 2 11 11 N 1.28666 * 109.63254 * 179.97438 * 10 9 7 12 12 N 1.40118 * 108.93799 * 359.97438 * 11 10 9 13 13 C 1.46508 * 126.49378 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.46866 * 89.97620 * 13 12 11 15 15 C 1.52996 * 117.49694 * 243.74730 * 14 13 12 16 16 C 1.53000 * 117.49554 * 175.08568 * 14 13 12 17 17 C 1.35021 * 107.01685 * 359.75384 * 12 11 10 18 18 C 1.50697 * 126.77705 * 180.23865 * 17 12 11 19 19 C 1.54267 * 110.03101 * 238.10847 * 18 17 12 20 20 C 1.54962 * 104.15945 * 217.13440 * 19 18 17 21 21 C 1.54889 * 102.77734 * 37.88741 * 20 19 18 22 22 C 1.53872 * 110.03538 * 120.88854 * 18 17 12 23 23 H 0.96996 * 120.00078 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47216 * 209.97683 * 13 12 11 25 25 H 1.08999 * 109.46840 * 329.97490 * 13 12 11 26 26 H 1.09003 * 115.55078 * 29.41945 * 14 13 12 27 27 H 1.08998 * 117.50067 * 359.97438 * 15 14 13 28 28 H 1.08997 * 117.49943 * 145.02301 * 15 14 13 29 29 H 1.08998 * 117.49668 * 214.97695 * 16 14 13 30 30 H 1.08999 * 117.50187 * 359.97438 * 16 14 13 31 31 H 1.09001 * 110.01779 * 359.49456 * 18 17 12 32 32 H 1.09001 * 110.48606 * 335.77979 * 19 18 17 33 33 H 1.08995 * 110.48889 * 98.42402 * 19 18 17 34 34 H 1.09003 * 110.72253 * 279.57399 * 20 19 18 35 35 H 1.08998 * 110.92919 * 156.29416 * 20 19 18 36 36 H 1.08999 * 110.48544 * 203.41117 * 21 20 19 37 37 H 1.08994 * 110.60153 * 80.81862 * 21 20 19 38 38 H 1.09004 * 110.02965 * 238.56831 * 22 18 17 39 39 H 1.09002 * 110.02939 * 359.94897 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2439 1.6176 0.0000 4 1 2.4914 2.0462 -1.4001 5 1 1.4414 2.6526 0.7000 6 1 3.5415 1.4401 0.7000 7 6 2.0085 -1.2103 0.0005 8 1 3.0885 -1.2102 0.0001 9 6 1.3010 -2.4356 -0.0049 10 7 -0.0400 -2.5769 -0.0060 11 7 -0.3429 -3.8274 -0.0119 12 7 0.8382 -4.5814 -0.0156 13 6 0.9389 -6.0430 -0.0220 14 6 0.9729 -6.5455 -1.4668 15 6 -0.1866 -7.4266 -1.9357 16 6 1.1926 -8.0433 -1.6887 17 6 1.8659 -3.7057 -0.0170 18 6 3.3355 -4.0393 -0.0259 19 6 4.0266 -3.4149 1.2038 20 6 5.4121 -2.9674 0.6735 21 6 5.0838 -2.4508 -0.7493 22 6 4.0076 -3.4270 -1.2673 23 1 -0.4850 0.8400 -0.0004 24 1 1.8521 -6.3465 0.4899 25 1 0.0764 -6.4688 0.4907 26 1 1.4096 -5.8597 -2.1929 27 1 -0.9734 -7.6487 -1.2148 28 1 -0.5126 -7.3209 -2.9704 29 1 1.7733 -8.3429 -2.5611 30 1 1.3133 -8.6706 -0.8056 31 1 3.4726 -5.1207 -0.0222 32 1 3.4606 -2.5558 1.5642 33 1 4.1411 -4.1563 1.9945 34 1 6.0992 -3.8125 0.6286 35 1 5.8250 -2.1682 1.2889 36 1 5.9700 -2.4888 -1.3828 37 1 4.6894 -1.4355 -0.7071 38 1 4.4716 -4.2112 -1.8656 39 1 3.2706 -2.8893 -1.8638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:16 Heat of formation + Delta-G solvation = 78.007711 kcal Electronic energy + Delta-G solvation = -20223.364320 eV Core-core repulsion = 17360.103590 eV Total energy + Delta-G solvation = -2863.260730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.96191 -38.67095 -38.48092 -35.36095 -34.01453 -31.77277 -29.39255 -29.29640 -28.04268 -26.43374 -23.28855 -22.60334 -22.47032 -21.60540 -21.23636 -19.88337 -19.09544 -17.19199 -16.79944 -16.49413 -16.05709 -15.90330 -15.68253 -14.88389 -14.77029 -14.11782 -14.01307 -13.87856 -13.06576 -12.94316 -12.81861 -12.68958 -12.38687 -12.29153 -12.24942 -11.90762 -11.79798 -11.73632 -11.58610 -11.53684 -11.34493 -11.13495 -11.02609 -10.94605 -10.59843 -10.17270 -9.23565 -8.24080 -6.08440 1.05475 1.43097 1.44021 1.56237 2.02069 2.35574 2.39080 2.84904 3.60810 3.67483 3.85616 3.86194 3.94678 4.00050 4.02374 4.22940 4.31790 4.49685 4.56315 4.68232 4.74641 4.76186 4.85679 4.89581 4.97272 4.98860 5.05915 5.13649 5.16457 5.23162 5.24229 5.32017 5.42738 5.50974 5.56743 5.64004 5.72881 5.82425 6.50449 6.57459 6.99725 7.18349 8.37107 8.76051 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.007646 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.320738 B = 3661.377117 C = 4697.523420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.016 3.984 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.467 4.467 8 H 0.109 0.891 9 C 0.112 3.888 10 N -0.289 5.289 11 N -0.181 5.181 12 N -0.360 5.360 13 C 0.157 3.843 14 C -0.188 4.188 15 C -0.182 4.182 16 C -0.136 4.136 17 C -0.068 4.068 18 C 0.012 3.988 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.106 4.106 23 H 0.268 0.732 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.591 -12.385 -1.211 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.504 4.504 8 H 0.126 0.874 9 C -0.021 4.021 10 N -0.158 5.158 11 N -0.155 5.155 12 N -0.154 5.154 13 C 0.036 3.964 14 C -0.208 4.208 15 C -0.219 4.219 16 C -0.173 4.173 17 C -0.204 4.204 18 C -0.009 4.009 19 C -0.158 4.158 20 C -0.147 4.147 21 C -0.161 4.161 22 C -0.145 4.145 23 H 0.077 0.923 24 H 0.130 0.870 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.137 0.863 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.741 -12.367 -1.193 15.788 hybrid contribution 0.338 1.121 -0.142 1.180 sum 10.078 -11.246 -1.335 15.160 Atomic orbital electron populations 1.70216 1.08758 1.28126 1.39100 1.26758 0.95443 1.04237 0.93220 0.85363 0.79319 0.77040 0.78964 1.19378 1.20751 1.17004 1.19193 0.94876 0.87994 1.48339 0.87365 1.19511 0.87377 0.93759 1.01468 1.75040 1.16124 1.06875 1.17747 1.81372 1.06867 0.98438 1.28867 1.49941 1.05446 1.07241 1.52727 1.21400 1.04373 0.74263 0.96390 1.22491 1.06587 0.95343 0.96386 1.23119 0.92592 1.03672 1.02554 1.23089 0.97873 0.91752 1.04591 1.22278 0.91912 0.89473 1.16709 1.19996 0.84898 0.99633 0.96359 1.22475 0.96376 1.00434 0.96535 1.22430 0.95749 1.01054 0.95500 1.22402 0.97981 0.98564 0.97141 1.22081 0.97203 0.98675 0.96496 0.92265 0.86968 0.88944 0.89943 0.88299 0.88992 0.87076 0.86347 0.89580 0.93033 0.90982 0.89337 0.91345 0.89880 0.93078 0.90213 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.57 11.92 21.80 0.26 -50.31 16 2 C 0.02 0.89 5.49 85.18 0.47 1.36 16 3 Si 0.97 41.58 29.56 68.60 2.03 43.61 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.47 -25.66 7.54 23.44 0.18 -25.49 16 8 H 0.11 5.33 3.69 -2.91 -0.01 5.32 16 9 C 0.11 6.33 6.25 39.67 0.25 6.58 16 10 N -0.29 -17.99 10.56 -52.51 -0.55 -18.55 16 11 N -0.18 -10.08 13.74 37.02 0.51 -9.57 16 12 N -0.36 -16.08 3.63 -331.61 -1.20 -17.29 16 13 C 0.16 4.87 6.46 86.38 0.56 5.43 16 14 C -0.19 -5.16 6.01 -10.79 -0.06 -5.23 16 15 C -0.18 -4.28 10.18 30.62 0.31 -3.97 16 16 C -0.14 -2.44 10.26 30.62 0.31 -2.12 16 17 C -0.07 -3.13 5.65 42.25 0.24 -2.89 16 18 C 0.01 0.41 3.08 -10.82 -0.03 0.38 16 19 C -0.12 -3.86 5.84 31.69 0.19 -3.68 16 20 C -0.11 -2.80 6.91 31.91 0.22 -2.58 16 21 C -0.12 -3.55 6.25 31.67 0.20 -3.36 16 22 C -0.11 -3.45 5.77 31.32 0.18 -3.27 16 23 H 0.27 15.12 8.30 -92.71 -0.77 14.35 16 24 H 0.11 2.79 7.18 -2.39 -0.02 2.78 16 25 H 0.09 2.71 7.88 -2.39 -0.02 2.69 16 26 H 0.08 2.70 8.14 -2.39 -0.02 2.69 16 27 H 0.10 2.25 8.03 -2.39 -0.02 2.23 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 2.44 6.93 -2.39 -0.02 2.42 16 32 H 0.05 2.09 6.08 -2.39 -0.01 2.08 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.74 6.24 -2.39 -0.01 1.73 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.03 1.44 7.22 -2.39 -0.02 1.42 16 Total: -1.00 -74.36 311.22 5.09 -69.28 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 1.05 Total: 21.66 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 3.00 Total: -38.83 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -0.99 Total: -95.71 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -74.36 5.09 -69.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.283 kcal (2) G-P(sol) polarization free energy of solvation -74.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds