Wall clock time and date at job start Mon Mar 30 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47802 * 2 1 4 4 C 1.53003 * 109.47428 * 239.99437 * 2 1 3 5 5 C 1.53785 * 113.61344 * 159.14091 * 4 2 1 6 6 C 1.53959 * 87.01632 * 220.04834 * 5 4 2 7 7 C 1.53782 * 113.61235 * 61.53170 * 4 2 1 8 8 N 1.46510 * 109.47048 * 119.99553 * 2 1 3 9 9 N 1.40120 * 126.48992 * 60.02604 * 8 2 1 10 10 N 1.28670 * 108.93655 * 179.97438 * 9 8 2 11 11 C 1.34843 * 109.62987 * 359.72216 * 10 9 8 12 12 C 1.41499 * 126.01756 * 180.27519 * 11 10 9 13 13 H 1.08003 * 119.99693 * 149.81523 * 12 11 10 14 14 C 1.39733 * 119.99926 * 329.80915 * 12 11 10 15 15 N 1.30992 * 119.99973 * 179.61276 * 14 12 11 16 16 Si 1.86800 * 120.00294 * 359.61014 * 14 12 11 17 17 H 1.48497 * 109.47151 * 84.90053 * 16 14 12 18 18 H 1.48503 * 109.47139 * 204.90332 * 16 14 12 19 19 H 1.48499 * 109.46849 * 324.90116 * 16 14 12 20 20 C 1.35013 * 126.49313 * 239.99872 * 8 2 1 21 21 C 1.50699 * 126.77176 * 0.02562 * 20 8 2 22 22 C 1.53008 * 117.49952 * 163.82034 * 21 20 8 23 23 C 1.53002 * 117.49635 * 232.47750 * 21 20 8 24 24 H 1.08998 * 109.46895 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46894 * 300.00945 * 1 2 3 26 26 H 1.09001 * 109.46438 * 60.00148 * 1 2 3 27 27 H 1.08997 * 112.84795 * 290.33757 * 4 2 1 28 28 H 1.08996 * 113.61483 * 334.56617 * 5 4 2 29 29 H 1.08993 * 113.61311 * 105.47754 * 5 4 2 30 30 H 1.09002 * 113.54193 * 270.81252 * 6 5 4 31 31 H 1.09001 * 113.74287 * 139.94539 * 6 5 4 32 32 H 1.08995 * 113.61302 * 254.53051 * 7 4 2 33 33 H 1.09004 * 113.61334 * 25.43679 * 7 4 2 34 34 H 0.96999 * 119.99902 * 179.97438 * 15 14 12 35 35 H 1.08992 * 115.55559 * 18.14872 * 21 20 8 36 36 H 1.08998 * 117.49877 * 214.99946 * 22 21 20 37 37 H 1.09006 * 117.49740 * 0.02562 * 22 21 20 38 38 H 1.09002 * 117.50040 * 359.97438 * 23 21 20 39 39 H 1.08998 * 117.50024 * 144.99731 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.4868 -0.3578 -1.6229 6 6 3.0235 -0.3622 -3.0911 7 6 1.6122 -0.0511 -2.5654 8 7 2.0183 -0.6906 1.1963 9 7 1.7654 -2.0222 1.5513 10 7 2.3576 -2.2772 2.6648 11 6 3.0139 -1.1790 3.0907 12 6 3.7839 -1.0761 4.2734 13 1 4.6269 -0.4021 4.3120 14 6 3.4536 -1.8465 5.3914 15 7 4.1709 -1.7570 6.4837 16 14 1.9888 -3.0042 5.3283 17 1 2.4067 -4.2993 4.7340 18 1 1.4787 -3.2325 6.7041 19 1 0.9167 -2.4009 4.4966 20 6 2.7977 -0.1645 2.1652 21 6 3.3329 1.2428 2.2277 22 6 3.8684 1.7360 3.5735 23 6 4.8390 1.4173 2.4335 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8520 -1.7947 -1.2245 28 1 3.7964 0.6244 -1.2657 29 1 4.2080 -1.1409 -1.3894 30 1 3.1056 -1.3376 -3.5706 31 1 3.4535 0.4411 -3.6894 32 1 0.8223 -0.5870 -3.0916 33 1 1.4084 1.0151 -2.4663 34 1 3.9414 -2.2915 7.2599 35 1 2.8245 1.9679 1.5922 36 1 3.7122 2.7854 3.8233 37 1 3.8338 1.0423 4.4136 38 1 5.4425 0.5142 2.5242 39 1 5.3213 2.2571 1.9333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:07 Heat of formation + Delta-G solvation = 124.685197 kcal Electronic energy + Delta-G solvation = -20253.062352 eV Core-core repulsion = 17391.825710 eV Total energy + Delta-G solvation = -2861.236643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61693 -38.90708 -36.39469 -34.33828 -32.92918 -30.09915 -29.48180 -26.11283 -25.29752 -25.26893 -22.89569 -22.24538 -21.58460 -20.18003 -19.27165 -18.85409 -17.41837 -15.95633 -15.34866 -15.22791 -14.77123 -14.24440 -14.20566 -13.69832 -13.06097 -12.81822 -12.65353 -12.54173 -12.24913 -11.88035 -11.75314 -11.60880 -11.28279 -10.87879 -10.85907 -10.68360 -10.56579 -10.30707 -10.27598 -10.19523 -10.13350 -9.89722 -9.66319 -9.17177 -8.82278 -8.55635 -7.45716 -6.50998 -4.25338 2.49599 3.24023 3.45368 3.48543 3.69513 3.94679 4.42944 4.51445 4.61375 4.64558 4.71141 4.83299 5.08646 5.19346 5.23641 5.36201 5.39599 5.57605 5.62106 5.67724 5.69838 5.74077 5.79801 5.81476 5.87078 5.95236 6.04803 6.19236 6.23565 6.25744 6.37210 6.48608 6.65979 6.81043 6.84528 7.13538 7.26572 7.56848 7.92710 8.43096 8.66433 9.05265 9.74242 10.50238 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.007138 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.876520 B = 3921.577427 C = 4535.306753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 H 0.092 0.908 4 C -0.115 4.115 5 C -0.133 4.133 6 C -0.141 4.141 7 C -0.130 4.130 8 N -0.354 5.354 9 N -0.114 5.114 10 N -0.302 5.302 11 C 0.131 3.869 12 C -0.446 4.446 13 H 0.106 0.894 14 C 0.091 3.909 15 N -0.843 5.843 16 Si 0.932 3.068 17 H -0.270 1.270 18 H -0.308 1.308 19 H -0.261 1.261 20 C -0.038 4.038 21 C -0.066 4.066 22 C -0.178 4.178 23 C -0.175 4.175 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.278 0.722 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 7.371 -13.979 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 H 0.110 0.890 4 C -0.135 4.135 5 C -0.171 4.171 6 C -0.178 4.178 7 C -0.168 4.168 8 N -0.148 5.148 9 N -0.089 5.089 10 N -0.173 5.173 11 C 0.000 4.000 12 C -0.482 4.482 13 H 0.123 0.877 14 C -0.124 4.124 15 N -0.473 5.473 16 Si 0.762 3.238 17 H -0.195 1.195 18 H -0.238 1.238 19 H -0.186 1.186 20 C -0.171 4.171 21 C -0.087 4.087 22 C -0.215 4.215 23 C -0.213 4.213 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.161 0.839 38 H 0.116 0.884 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.092 5.960 -14.192 15.927 hybrid contribution -0.157 0.441 0.181 0.502 sum -4.249 6.402 -14.011 15.979 Atomic orbital electron populations 1.22083 0.93958 1.03499 1.02056 1.21143 0.94810 0.95098 0.82188 0.89001 1.22918 0.96761 1.01153 0.92649 1.22941 0.96452 1.02089 0.95606 1.22824 0.96686 1.01707 0.96613 1.22900 0.97202 1.00734 0.95998 1.49542 1.37278 1.10867 1.17103 1.81310 1.23810 0.92623 1.11140 1.74251 1.12950 1.24729 1.05378 1.19186 0.98108 0.86284 0.96469 1.18480 1.13567 1.23725 0.92459 0.87688 1.25739 0.97096 0.95159 0.94395 1.69669 1.37596 1.36873 1.03142 0.85837 0.82208 0.81473 0.74265 1.19543 1.23758 1.18551 1.20853 1.05110 0.95297 0.95809 1.19735 0.95799 0.91120 1.02013 1.23568 1.01807 1.01555 0.94568 1.22924 0.91860 1.02780 1.03731 0.91260 0.92206 0.91231 0.88140 0.90064 0.91480 0.90339 0.91537 0.91308 0.90043 0.91194 0.89022 0.90115 0.83942 0.88374 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.28 37.16 0.34 -1.77 16 2 C 0.17 2.58 2.88 -67.92 -0.20 2.38 16 3 H 0.09 1.25 6.60 -51.93 -0.34 0.90 16 4 C -0.12 -1.54 3.37 -89.80 -0.30 -1.84 16 5 C -0.13 -1.70 7.65 -25.82 -0.20 -1.90 16 6 C -0.14 -1.41 8.09 -25.82 -0.21 -1.62 16 7 C -0.13 -1.29 6.75 -25.92 -0.17 -1.46 16 8 N -0.35 -7.26 3.29 -49.73 -0.16 -7.42 16 9 N -0.11 -2.76 13.62 60.35 0.82 -1.94 16 10 N -0.30 -8.15 8.38 32.05 0.27 -7.88 16 11 C 0.13 3.42 6.05 -85.01 -0.51 2.90 16 12 C -0.45 -12.16 7.71 -37.78 -0.29 -12.45 16 13 H 0.11 2.86 5.25 -52.48 -0.28 2.58 16 14 C 0.09 2.55 5.51 -17.35 -0.10 2.45 16 15 N -0.84 -23.68 13.94 55.54 0.77 -22.91 16 16 Si 0.93 24.27 25.99 -169.99 -4.42 19.85 16 17 H -0.27 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.31 -7.72 7.11 56.52 0.40 -7.32 16 19 H -0.26 -7.09 6.57 56.52 0.37 -6.72 16 20 C -0.04 -0.85 6.76 -80.91 -0.55 -1.39 16 21 C -0.07 -1.21 5.91 -91.77 -0.54 -1.75 16 22 C -0.18 -3.27 9.55 -26.69 -0.25 -3.53 16 23 C -0.17 -3.02 9.75 -26.69 -0.26 -3.28 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.70 7.50 -51.93 -0.39 0.31 16 27 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.08 1.01 7.99 -51.93 -0.41 0.59 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.28 7.29 8.30 -40.82 -0.34 6.95 16 35 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.14 3.16 4.71 -51.93 -0.24 2.91 16 38 H 0.10 1.91 7.57 -51.93 -0.39 1.51 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 311.70 15.07 4.70 4.70 Total: -1.00 -30.50 311.70 -7.08 -37.58 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.82 Total: 1.28 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -3.24 Total: -23.26 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 1.70 Total: -40.15 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.42 Total: 19.85 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.50 -7.08 -37.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.270 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds