Wall clock time and date at job start Mon Mar 30 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99532 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47001 * 119.99934 * 10 8 6 13 13 H 1.48497 * 109.47392 * 239.99632 * 10 8 6 14 14 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 15 15 C 1.38238 * 119.99746 * 79.73055 * 14 2 1 16 16 C 1.38233 * 119.99710 * 179.78730 * 15 14 2 17 17 C 1.38236 * 119.99804 * 0.44000 * 16 15 14 18 18 C 1.50702 * 119.99971 * 179.83333 * 17 16 15 19 19 C 1.52998 * 109.47352 * 239.98110 * 18 17 16 20 20 C 1.53008 * 109.46957 * 359.97438 * 18 17 16 21 21 C 1.52996 * 109.47339 * 119.97343 * 18 17 16 22 22 C 1.38233 * 120.00375 * 359.80870 * 17 16 15 23 23 C 1.38230 * 119.99859 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 26 26 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 27 27 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 28 28 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 29 29 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 30 30 H 0.97001 * 119.99132 * 180.02562 * 9 8 6 31 31 H 1.07997 * 119.99876 * 359.97438 * 15 14 2 32 32 H 1.08004 * 119.99974 * 180.26989 * 16 15 14 33 33 H 1.08999 * 109.47555 * 59.99855 * 19 18 17 34 34 H 1.09001 * 109.47179 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.46853 * 299.99831 * 19 18 17 36 36 H 1.09000 * 109.47497 * 60.00070 * 20 18 17 37 37 H 1.09001 * 109.47031 * 179.97438 * 20 18 17 38 38 H 1.08999 * 109.47124 * 299.99638 * 20 18 17 39 39 H 1.09003 * 109.46660 * 60.00295 * 21 18 17 40 40 H 1.09001 * 109.47438 * 180.02562 * 21 18 17 41 41 H 1.09004 * 109.47468 * 300.00717 * 21 18 17 42 42 H 1.08001 * 120.00201 * 179.97438 * 22 17 16 43 43 H 1.08001 * 120.00329 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 1 2.8370 -1.5697 -3.4797 8 6 2.7315 0.1353 -4.7596 9 7 2.4280 1.4116 -4.8524 10 14 3.3580 -0.7872 -6.2582 11 1 3.6266 -2.2012 -5.8925 12 1 2.3341 -0.7392 -7.3328 13 1 4.6118 -0.1544 -6.7407 14 6 2.0324 -0.7104 1.2305 15 6 2.0615 -2.0920 1.2674 16 6 2.5264 -2.7436 2.3944 17 6 2.9536 -2.0137 3.4879 18 6 3.4569 -2.7241 4.7180 19 6 2.5863 -2.3454 5.9178 20 6 3.3900 -4.2366 4.4967 21 6 4.9052 -2.3118 4.9883 22 6 2.9196 -0.6322 3.4529 23 6 2.4589 0.0194 2.3242 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.4495 -1.4979 -1.4101 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0462 -2.1182 30 1 2.5291 1.8737 -5.6993 31 1 1.7239 -2.6622 0.4146 32 1 2.5533 -3.8230 2.4216 33 1 1.5545 -2.6392 5.7252 34 1 2.9507 -2.8589 6.8076 35 1 2.6339 -1.2679 6.0754 36 1 4.0102 -4.5066 3.6419 37 1 3.7545 -4.7504 5.3862 38 1 2.3582 -4.5304 4.3041 39 1 4.9528 -1.2343 5.1460 40 1 5.2695 -2.8260 5.8778 41 1 5.5255 -2.5816 4.1335 42 1 3.2530 -0.0620 4.3074 43 1 2.4320 1.0987 2.2970 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:32 Heat of formation + Delta-G solvation = -1.154580 kcal Electronic energy + Delta-G solvation = -19318.623580 eV Core-core repulsion = 16555.470459 eV Total energy + Delta-G solvation = -2763.153121 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 261.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.80565 -37.26662 -35.18437 -32.75209 -30.87942 -30.34796 -28.27182 -27.44064 -27.35448 -25.96648 -23.51275 -22.30236 -21.50763 -20.31164 -19.00846 -16.86030 -16.05757 -15.25997 -14.82601 -14.55823 -14.36535 -14.22575 -13.80279 -13.77148 -13.36617 -13.08104 -12.86777 -12.66014 -12.42984 -12.06061 -11.89465 -11.82268 -11.76052 -11.40346 -11.31227 -11.24309 -10.98809 -10.76643 -10.73867 -10.65213 -10.34181 -10.28876 -9.87866 -9.16875 -8.59184 -8.49026 -8.16969 -7.27009 -6.02769 -4.04337 1.67051 1.73654 3.31413 3.38701 3.43936 4.04982 4.43958 4.57723 4.69754 4.91617 5.07752 5.22724 5.26784 5.30686 5.33282 5.41656 5.47106 5.49470 5.64180 5.64690 5.72954 5.74560 5.75235 5.79052 5.87435 5.93685 5.96704 6.11248 6.20181 6.21148 6.26255 6.34867 6.40540 6.51823 6.78521 6.87098 7.06107 7.27075 7.33440 7.44071 7.80061 8.13606 8.39964 8.61899 9.05212 9.60519 11.08358 Molecular weight = 261.18amu Principal moments of inertia in cm(-1) A = 0.030723 B = 0.003750 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.163568 B = 7464.456716 C = 7861.268826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 H 0.079 0.921 4 N -0.680 5.680 5 C 0.194 3.806 6 C -0.512 4.512 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.054 4.054 15 C -0.095 4.095 16 C -0.124 4.124 17 C -0.086 4.086 18 C -0.027 4.027 19 C -0.137 4.137 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.119 4.119 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.328 0.672 28 H -0.012 1.012 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.113 0.887 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 -7.018 20.197 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.005 3.995 3 H 0.097 0.903 4 N -0.310 5.310 5 C 0.068 3.932 6 C -0.551 4.551 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.055 4.055 15 C -0.113 4.113 16 C -0.141 4.141 17 C -0.086 4.086 18 C -0.027 4.027 19 C -0.194 4.194 20 C -0.200 4.200 21 C -0.195 4.195 22 C -0.136 4.136 23 C -0.137 4.137 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.006 0.994 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.131 0.869 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.013 -6.780 20.209 21.316 hybrid contribution -0.578 -0.157 -1.193 1.335 sum -0.566 -6.937 19.016 20.250 Atomic orbital electron populations 1.22458 0.97190 1.01723 1.01784 1.20467 0.92009 0.97470 0.89588 0.90312 1.60780 1.55273 1.10407 1.04529 1.19588 0.95306 0.91804 0.86532 1.21227 1.43374 0.96952 0.93563 0.91939 1.24990 0.95669 0.94931 0.99024 1.69976 1.49000 1.08995 1.25795 0.86436 0.78424 0.80017 0.82502 1.19653 1.21115 1.21006 1.20000 0.97012 0.93869 0.94624 1.20946 0.98943 0.94172 0.97255 1.21106 1.00132 0.99651 0.93256 1.19651 1.00397 0.93488 0.95060 1.19447 0.95401 0.94931 0.92965 1.21876 0.99525 1.01411 0.96573 1.21953 1.01970 0.94478 1.01622 1.21885 0.94920 1.01339 1.01362 1.20795 1.01054 0.93803 0.97953 1.20971 0.99906 0.99527 0.93322 0.92812 0.92974 0.92027 0.85440 0.99412 0.95469 0.92996 0.86143 0.86228 0.92595 0.92708 0.92537 0.92176 0.92732 0.92329 0.92506 0.92718 0.92403 0.86858 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.14 37.16 0.34 -2.42 16 2 C 0.12 2.09 2.79 -68.86 -0.19 1.89 16 3 H 0.08 1.50 7.66 -51.93 -0.40 1.10 16 4 N -0.68 -14.62 5.70 -109.21 -0.62 -15.24 16 5 C 0.19 5.09 5.24 -4.98 -0.03 5.07 16 6 C -0.51 -14.61 9.32 -34.44 -0.32 -14.93 16 7 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C -0.05 -0.88 4.95 -104.62 -0.52 -1.40 16 15 C -0.09 -1.46 9.32 -39.58 -0.37 -1.83 16 16 C -0.12 -1.67 8.98 -39.58 -0.36 -2.03 16 17 C -0.09 -1.08 4.76 -104.62 -0.50 -1.58 16 18 C -0.03 -0.27 0.85 -155.66 -0.13 -0.41 16 19 C -0.14 -1.20 8.29 37.16 0.31 -0.89 16 20 C -0.14 -1.29 7.13 37.16 0.27 -1.02 16 21 C -0.14 -1.29 8.29 37.16 0.31 -0.98 16 22 C -0.12 -1.53 8.71 -39.59 -0.34 -1.88 16 23 C -0.12 -1.74 9.67 -39.58 -0.38 -2.12 16 24 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 27 H 0.33 6.73 7.81 -39.29 -0.31 6.42 16 28 H -0.01 -0.33 7.44 -51.93 -0.39 -0.71 16 29 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.12 1.84 7.26 -52.49 -0.38 1.46 16 32 H 0.12 1.40 5.90 -52.48 -0.31 1.09 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 36 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 39 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.11 1.25 7.10 -52.49 -0.37 0.87 16 43 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 LS Contribution 342.36 15.07 5.16 5.16 Total: -1.00 -30.06 342.36 -9.20 -39.25 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.43 Total: 3.27 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -2.02 Total: -23.04 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.11 Total: -41.47 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.06 -9.20 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.099 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds