Wall clock time and date at job start Mon Mar 30 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99532 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47001 * 119.99934 * 10 8 6 13 13 H 1.48497 * 109.47392 * 239.99632 * 10 8 6 14 14 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 15 15 C 1.38238 * 119.99746 * 79.73055 * 14 2 1 16 16 C 1.38233 * 119.99710 * 179.78730 * 15 14 2 17 17 C 1.38236 * 119.99804 * 0.44000 * 16 15 14 18 18 C 1.50702 * 119.99971 * 179.83333 * 17 16 15 19 19 C 1.52998 * 109.47352 * 239.98110 * 18 17 16 20 20 C 1.53008 * 109.46957 * 359.97438 * 18 17 16 21 21 C 1.52996 * 109.47339 * 119.97343 * 18 17 16 22 22 C 1.38233 * 120.00375 * 359.80870 * 17 16 15 23 23 C 1.38230 * 119.99859 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 26 26 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 27 27 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 28 28 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 29 29 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 30 30 H 0.97001 * 119.99132 * 180.02562 * 9 8 6 31 31 H 1.07997 * 119.99876 * 359.97438 * 15 14 2 32 32 H 1.08004 * 119.99974 * 180.26989 * 16 15 14 33 33 H 1.08999 * 109.47555 * 59.99855 * 19 18 17 34 34 H 1.09001 * 109.47179 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.46853 * 299.99831 * 19 18 17 36 36 H 1.09000 * 109.47497 * 60.00070 * 20 18 17 37 37 H 1.09001 * 109.47031 * 179.97438 * 20 18 17 38 38 H 1.08999 * 109.47124 * 299.99638 * 20 18 17 39 39 H 1.09003 * 109.46660 * 60.00295 * 21 18 17 40 40 H 1.09001 * 109.47438 * 180.02562 * 21 18 17 41 41 H 1.09004 * 109.47468 * 300.00717 * 21 18 17 42 42 H 1.08001 * 120.00201 * 179.97438 * 22 17 16 43 43 H 1.08001 * 120.00329 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 1 2.8370 -1.5697 -3.4797 8 6 2.7315 0.1353 -4.7596 9 7 2.4280 1.4116 -4.8524 10 14 3.3580 -0.7872 -6.2582 11 1 3.6266 -2.2012 -5.8925 12 1 2.3341 -0.7392 -7.3328 13 1 4.6118 -0.1544 -6.7407 14 6 2.0324 -0.7104 1.2305 15 6 2.0615 -2.0920 1.2674 16 6 2.5264 -2.7436 2.3944 17 6 2.9536 -2.0137 3.4879 18 6 3.4569 -2.7241 4.7180 19 6 2.5863 -2.3454 5.9178 20 6 3.3900 -4.2366 4.4967 21 6 4.9052 -2.3118 4.9883 22 6 2.9196 -0.6322 3.4529 23 6 2.4589 0.0194 2.3242 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.4495 -1.4979 -1.4101 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0462 -2.1182 30 1 2.5291 1.8737 -5.6993 31 1 1.7239 -2.6622 0.4146 32 1 2.5533 -3.8230 2.4216 33 1 1.5545 -2.6392 5.7252 34 1 2.9507 -2.8589 6.8076 35 1 2.6339 -1.2679 6.0754 36 1 4.0102 -4.5066 3.6419 37 1 3.7545 -4.7504 5.3862 38 1 2.3582 -4.5304 4.3041 39 1 4.9528 -1.2343 5.1460 40 1 5.2695 -2.8260 5.8778 41 1 5.5255 -2.5816 4.1335 42 1 3.2530 -0.0620 4.3074 43 1 2.4320 1.0987 2.2970 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:31 Heat of formation + Delta-G solvation = -17.177682 kcal Electronic energy + Delta-G solvation = -19319.318394 eV Core-core repulsion = 16555.470459 eV Total energy + Delta-G solvation = -2763.847935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 261.179 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86358 -38.50745 -36.53953 -34.77660 -32.06956 -31.85857 -29.54147 -28.20479 -28.04135 -27.92223 -24.85281 -23.85120 -22.93713 -21.64774 -19.95702 -18.71589 -17.44184 -16.78364 -16.22363 -15.98214 -15.66977 -15.22481 -15.09908 -14.98682 -14.44502 -14.30201 -14.19315 -14.06940 -13.57517 -13.46583 -13.22570 -13.01506 -12.75573 -12.69286 -12.56996 -12.50927 -12.46145 -12.24314 -12.02514 -11.87084 -11.73236 -11.47035 -11.28293 -11.17566 -10.68363 -9.69883 -9.32781 -9.06344 -8.23177 -6.34180 0.54929 0.62601 1.40139 1.41136 1.55007 2.39404 2.92860 3.10066 3.58061 3.74237 3.89221 4.00319 4.14710 4.18881 4.22406 4.36825 4.37952 4.46727 4.65396 4.68127 4.80239 4.83891 4.85384 4.92117 4.95202 5.04494 5.06287 5.08168 5.12445 5.17724 5.23063 5.27672 5.28949 5.37086 5.43460 5.50112 5.60083 5.69995 5.83111 5.86390 6.03017 6.22958 6.46406 6.72175 6.89057 7.36695 8.88504 Molecular weight = 261.18amu Principal moments of inertia in cm(-1) A = 0.030723 B = 0.003750 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.163568 B = 7464.456716 C = 7861.268826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 H 0.061 0.939 4 N -0.679 5.679 5 C 0.211 3.789 6 C -0.534 4.534 7 H 0.063 0.937 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.973 3.027 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.279 1.279 14 C -0.075 4.075 15 C -0.109 4.109 16 C -0.127 4.127 17 C -0.081 4.081 18 C -0.028 4.028 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.117 4.117 23 C -0.128 4.128 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.335 0.665 28 H -0.034 1.034 29 H -0.005 1.005 30 H 0.265 0.735 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.136 0.864 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 -8.594 21.705 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.006 3.994 3 H 0.079 0.921 4 N -0.309 5.309 5 C 0.084 3.916 6 C -0.573 4.573 7 H 0.081 0.919 8 C -0.197 4.197 9 N -0.574 5.574 10 Si 0.798 3.202 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.204 1.204 14 C -0.076 4.076 15 C -0.127 4.127 16 C -0.145 4.145 17 C -0.082 4.082 18 C -0.028 4.028 19 C -0.192 4.192 20 C -0.201 4.201 21 C -0.195 4.195 22 C -0.135 4.135 23 C -0.147 4.147 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.152 0.848 28 H -0.016 1.016 29 H 0.013 0.987 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.155 0.845 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.154 0.846 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.545 -8.366 21.743 23.303 hybrid contribution -0.735 0.339 -1.545 1.744 sum -0.190 -8.027 20.198 21.736 Atomic orbital electron populations 1.22338 0.95599 1.02415 1.01817 1.20459 0.93395 0.96493 0.89026 0.92087 1.60649 1.56335 1.09961 1.03987 1.19196 0.93049 0.91485 0.87907 1.21574 1.43803 0.97194 0.94694 0.91852 1.25954 0.95585 0.95804 1.02387 1.70101 1.49768 1.10662 1.26892 0.85277 0.77897 0.78859 0.78214 1.18686 1.20178 1.20442 1.19831 0.99135 0.94333 0.94282 1.21000 0.99838 0.93881 0.98022 1.21332 0.99616 1.00673 0.92847 1.20044 0.98812 0.93548 0.95754 1.19530 0.95887 0.95280 0.92104 1.21863 0.99027 1.01749 0.96542 1.21959 1.02021 0.93861 1.02218 1.21887 0.94220 1.01648 1.01708 1.21058 1.00192 0.94291 0.97964 1.21134 0.99989 1.00045 0.93518 0.91758 0.90807 0.93983 0.84760 1.01642 0.98654 0.92626 0.86704 0.84498 0.93017 0.90994 0.92392 0.92788 0.91066 0.92264 0.92430 0.90875 0.93581 0.84596 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 9.14 71.98 0.66 -4.63 16 2 C 0.12 4.34 2.79 44.17 0.12 4.47 16 3 H 0.06 2.45 7.66 -2.39 -0.02 2.43 16 4 N -0.68 -30.22 5.70 -499.44 -2.85 -33.07 16 5 C 0.21 11.60 5.24 85.56 0.45 12.05 16 6 C -0.53 -31.11 9.32 25.60 0.24 -30.87 16 7 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 8 C 0.00 0.05 5.46 84.66 0.46 0.51 16 9 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 10 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 C -0.08 -2.45 4.95 -19.86 -0.10 -2.55 16 15 C -0.11 -3.34 9.32 22.27 0.21 -3.13 16 16 C -0.13 -3.27 8.98 22.27 0.20 -3.07 16 17 C -0.08 -1.89 4.76 -19.87 -0.09 -1.99 16 18 C -0.03 -0.48 0.85 -52.93 -0.05 -0.53 16 19 C -0.13 -1.95 8.29 71.98 0.60 -1.35 16 20 C -0.14 -2.19 7.13 71.98 0.51 -1.68 16 21 C -0.14 -2.21 8.29 71.98 0.60 -1.61 16 22 C -0.12 -2.84 8.71 22.27 0.19 -2.65 16 23 C -0.13 -3.69 9.67 22.27 0.22 -3.47 16 24 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.04 1.50 7.45 -2.39 -0.02 1.49 16 27 H 0.33 14.08 7.81 -89.69 -0.70 13.38 16 28 H -0.03 -1.98 7.44 -2.39 -0.02 -2.00 16 29 H 0.00 -0.28 8.05 -2.39 -0.02 -0.30 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.11 3.54 7.26 -2.91 -0.02 3.52 16 32 H 0.14 2.97 5.90 -2.91 -0.02 2.96 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.82 7.39 -2.39 -0.02 0.80 16 36 H 0.05 0.89 7.51 -2.39 -0.02 0.87 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.90 7.51 -2.39 -0.02 0.88 16 39 H 0.06 0.91 7.39 -2.39 -0.02 0.89 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.04 0.84 8.14 -2.38 -0.02 0.83 16 42 H 0.14 2.64 7.10 -2.91 -0.02 2.62 16 43 H 0.12 3.25 8.04 -2.91 -0.02 3.23 16 Total: -1.00 -65.09 342.36 3.94 -61.15 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.26 Total: 22.37 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 4.21 Total: -40.51 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -2.56 Total: -89.98 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -65.09 3.94 -61.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.971 kcal (2) G-P(sol) polarization free energy of solvation -65.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds