Wall clock time and date at job start Mon Mar 30 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86801 * 119.99661 * 2 1 4 4 H 1.48496 * 109.47085 * 275.27318 * 3 2 1 5 5 H 1.48496 * 109.47297 * 35.27511 * 3 2 1 6 6 H 1.48500 * 109.46786 * 155.27501 * 3 2 1 7 7 C 1.39932 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99993 * 342.18516 * 7 2 1 9 9 C 1.41118 * 120.00055 * 162.18324 * 7 2 1 10 10 C 1.41980 * 120.73144 * 314.61988 * 9 7 2 11 11 N 1.38417 * 120.99913 * 359.97438 * 10 9 7 12 12 C 1.39166 * 117.99581 * 180.02562 * 10 9 7 13 13 C 1.50699 * 120.33397 * 180.02562 * 12 10 9 14 14 F 1.39899 * 109.47254 * 299.97613 * 13 12 10 15 15 F 1.39897 * 109.47315 * 59.98003 * 13 12 10 16 16 C 1.38030 * 119.32265 * 0.02562 * 12 10 9 17 17 N 1.32258 * 121.45821 * 359.97438 * 16 12 10 18 18 C 1.31487 * 122.22127 * 0.02562 * 17 16 12 19 19 C 1.50701 * 119.76375 * 179.97438 * 18 17 16 20 20 Cl 1.80305 * 109.46973 * 267.84956 * 19 18 17 21 21 H 0.96992 * 120.00045 * 359.97438 * 1 2 3 22 22 H 0.97006 * 119.99005 * 180.02562 * 11 10 9 23 23 H 0.96992 * 120.00646 * 0.02562 * 11 10 9 24 24 H 1.09007 * 109.46858 * 179.97438 * 13 12 10 25 25 H 1.08008 * 119.26977 * 179.97438 * 16 12 10 26 26 H 1.09002 * 109.47696 * 27.85048 * 19 18 17 27 27 H 1.09003 * 109.47094 * 147.85458 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3787 2.1108 -1.3941 5 1 1.5003 2.6179 0.8085 6 1 3.5915 1.4106 0.5856 7 6 2.0085 -1.2118 -0.0005 8 1 1.5074 -2.1248 0.2852 9 6 3.3689 -1.2409 -0.3745 10 6 3.8203 -0.5414 -1.5246 11 7 2.9405 0.1853 -2.3079 12 6 5.1738 -0.6094 -1.8411 13 6 5.7100 0.1134 -3.0499 14 9 5.0743 -0.3662 -4.2001 15 9 5.4660 1.4847 -2.9195 16 6 6.0200 -1.3457 -1.0366 17 7 5.5732 -1.9882 0.0296 18 6 4.3070 -1.9642 0.3831 19 6 3.8581 -2.7173 1.6088 20 17 3.3273 -4.3741 1.1354 21 1 -0.4850 0.8400 0.0004 22 1 3.2648 0.6575 -3.0909 23 1 2.0000 0.2225 -2.0741 24 1 6.7835 -0.0586 -3.1295 25 1 7.0702 -1.3982 -1.2833 26 1 4.6855 -2.7887 2.3148 27 1 3.0268 -2.1890 2.0756 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238659372.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:34 Heat of formation + Delta-G solvation = -88.802164 kcal Electronic energy + Delta-G solvation = -18024.301013 eV Core-core repulsion = 14670.901647 eV Total energy + Delta-G solvation = -3353.399366 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.038 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.61954 -46.57176 -39.25500 -35.34757 -34.98935 -33.60564 -31.86405 -29.75539 -27.96797 -25.52683 -24.15693 -21.53523 -20.35899 -18.42594 -17.31651 -16.81386 -16.36220 -16.09797 -15.63395 -15.01102 -14.39750 -13.92319 -13.53052 -13.38331 -13.04669 -12.98119 -12.66393 -12.56204 -12.38634 -12.02746 -11.78235 -11.44146 -11.19377 -10.60262 -10.30201 -10.01080 -9.68341 -9.60308 -9.32602 -8.48683 -8.02439 -7.22845 -7.01030 -4.61900 1.78277 2.48751 3.00378 3.05757 3.15032 3.26289 3.78764 4.19346 4.28617 4.57519 4.73322 4.98405 5.07837 5.33808 5.54073 5.64314 5.90105 6.14967 6.33499 6.52078 6.66751 6.83097 7.12170 7.46501 7.95341 8.14463 8.30540 8.40904 8.56434 9.17005 9.93757 Molecular weight = 262.04amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.011473 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.841272 B = 2439.997645 C = 3573.135670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.255 1.255 5 H -0.290 1.290 6 H -0.255 1.255 7 C -0.453 4.453 8 H 0.105 0.895 9 C 0.012 3.988 10 C 0.216 3.784 11 N -0.856 5.856 12 C -0.288 4.288 13 C 0.322 3.678 14 F -0.208 7.208 15 F -0.210 7.210 16 C 0.069 3.931 17 N -0.484 5.484 18 C 0.034 3.966 19 C 0.056 3.944 20 Cl -0.204 7.204 21 H 0.286 0.714 22 H 0.390 0.610 23 H 0.407 0.593 24 H 0.112 0.888 25 H 0.135 0.865 26 H 0.088 0.912 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 1.912 -2.167 7.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.180 1.180 5 H -0.217 1.217 6 H -0.178 1.178 7 C -0.483 4.483 8 H 0.123 0.877 9 C 0.004 3.996 10 C 0.103 3.897 11 N -0.399 5.399 12 C -0.299 4.299 13 C 0.267 3.733 14 F -0.190 7.190 15 F -0.191 7.191 16 C -0.094 4.094 17 N -0.194 5.194 18 C -0.103 4.103 19 C -0.007 4.007 20 Cl -0.178 7.178 21 H 0.096 0.904 22 H 0.219 0.781 23 H 0.241 0.759 24 H 0.129 0.871 25 H 0.152 0.848 26 H 0.107 0.893 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.685 1.400 -1.636 7.024 hybrid contribution -0.684 1.469 -0.961 1.884 sum 6.001 2.869 -2.596 7.141 Atomic orbital electron populations 1.69719 1.07680 1.30147 1.35401 1.26104 0.94820 1.01168 0.92382 0.86683 0.81041 0.80472 0.79577 1.18014 1.21696 1.17808 1.19134 0.91983 0.96505 1.40720 0.87718 1.18083 0.95030 0.95356 0.91124 1.18061 0.88300 0.93059 0.90303 1.42782 1.10908 1.55483 1.30764 1.20346 0.94540 1.12360 1.02660 1.20187 0.96847 0.74811 0.81435 1.92966 1.85129 1.88065 1.52820 1.92963 1.96047 1.33968 1.96125 1.21317 0.97764 0.97483 0.92846 1.66863 1.16895 1.19565 1.16046 1.20728 0.87990 1.04316 0.97237 1.22644 1.01430 0.81794 0.94829 1.98679 1.92559 1.32232 1.94355 0.90376 0.78135 0.75929 0.87085 0.84790 0.89342 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.68 13.93 55.55 0.77 -18.91 15 2 C 0.07 1.74 4.16 -17.32 -0.07 1.66 15 3 Si 0.90 19.41 24.19 -169.99 -4.11 15.30 15 4 H -0.26 -5.24 6.09 56.52 0.34 -4.90 15 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.25 -5.90 7.11 56.52 0.40 -5.50 15 7 C -0.45 -11.07 7.85 -37.86 -0.30 -11.37 15 8 H 0.11 2.74 7.94 -52.49 -0.42 2.33 15 9 C 0.01 0.27 4.65 -106.48 -0.49 -0.22 15 10 C 0.22 4.76 5.23 -83.11 -0.44 4.32 15 11 N -0.86 -17.63 6.09 32.83 0.20 -17.43 15 12 C -0.29 -5.69 5.39 -104.35 -0.56 -6.25 15 13 C 0.32 5.23 4.95 36.01 0.18 5.40 15 14 F -0.21 -3.55 16.36 2.25 0.04 -3.52 15 15 F -0.21 -3.63 16.36 2.25 0.04 -3.59 15 16 C 0.07 1.34 10.80 -17.44 -0.19 1.15 15 17 N -0.48 -10.33 10.24 -8.93 -0.09 -10.43 15 18 C 0.03 0.74 6.23 -81.85 -0.51 0.23 15 19 C 0.06 1.09 6.44 36.01 0.23 1.32 15 20 Cl -0.20 -3.99 29.13 -51.86 -1.51 -5.50 15 21 H 0.29 6.40 8.30 -40.82 -0.34 6.06 15 22 H 0.39 7.33 6.45 -40.82 -0.26 7.06 15 23 H 0.41 8.64 5.16 -40.82 -0.21 8.43 15 24 H 0.11 1.35 7.88 -51.93 -0.41 0.94 15 25 H 0.13 2.07 7.93 -52.48 -0.42 1.65 15 26 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 27 H 0.11 2.08 7.20 -51.93 -0.37 1.70 15 LS Contribution 251.31 15.07 3.79 3.79 Total: -1.00 -26.21 251.31 -4.73 -30.95 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -1.70 Total: 13.08 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.15 Total: -3.74 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.88 Total: -46.76 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.07 Total: -7.11 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.11 Total: 15.30 kcal Atomic # 17 Polarization: -3.99 SS G_CDS: -1.51 Total: -5.50 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.21 -4.73 -30.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238659372.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.856 kcal (2) G-P(sol) polarization free energy of solvation -26.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds