Wall clock time and date at job start Mon Mar 30 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86801 * 119.99661 * 2 1 4 4 H 1.48496 * 109.47085 * 275.27318 * 3 2 1 5 5 H 1.48496 * 109.47297 * 35.27511 * 3 2 1 6 6 H 1.48500 * 109.46786 * 155.27501 * 3 2 1 7 7 C 1.39932 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99993 * 342.18516 * 7 2 1 9 9 C 1.41118 * 120.00055 * 162.18324 * 7 2 1 10 10 C 1.41980 * 120.73144 * 314.61988 * 9 7 2 11 11 N 1.38417 * 120.99913 * 359.97438 * 10 9 7 12 12 C 1.39166 * 117.99581 * 180.02562 * 10 9 7 13 13 C 1.50699 * 120.33397 * 180.02562 * 12 10 9 14 14 F 1.39899 * 109.47254 * 299.97613 * 13 12 10 15 15 F 1.39897 * 109.47315 * 59.98003 * 13 12 10 16 16 C 1.38030 * 119.32265 * 0.02562 * 12 10 9 17 17 N 1.32258 * 121.45821 * 359.97438 * 16 12 10 18 18 C 1.31487 * 122.22127 * 0.02562 * 17 16 12 19 19 C 1.50701 * 119.76375 * 179.97438 * 18 17 16 20 20 Cl 1.80305 * 109.46973 * 267.84956 * 19 18 17 21 21 H 0.96992 * 120.00045 * 359.97438 * 1 2 3 22 22 H 0.97006 * 119.99005 * 180.02562 * 11 10 9 23 23 H 0.96992 * 120.00646 * 0.02562 * 11 10 9 24 24 H 1.09007 * 109.46858 * 179.97438 * 13 12 10 25 25 H 1.08008 * 119.26977 * 179.97438 * 16 12 10 26 26 H 1.09002 * 109.47696 * 27.85048 * 19 18 17 27 27 H 1.09003 * 109.47094 * 147.85458 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3787 2.1108 -1.3941 5 1 1.5003 2.6179 0.8085 6 1 3.5915 1.4106 0.5856 7 6 2.0085 -1.2118 -0.0005 8 1 1.5074 -2.1248 0.2852 9 6 3.3689 -1.2409 -0.3745 10 6 3.8203 -0.5414 -1.5246 11 7 2.9405 0.1853 -2.3079 12 6 5.1738 -0.6094 -1.8411 13 6 5.7100 0.1134 -3.0499 14 9 5.0743 -0.3662 -4.2001 15 9 5.4660 1.4847 -2.9195 16 6 6.0200 -1.3457 -1.0366 17 7 5.5732 -1.9882 0.0296 18 6 4.3070 -1.9642 0.3831 19 6 3.8581 -2.7173 1.6088 20 17 3.3273 -4.3741 1.1354 21 1 -0.4850 0.8400 0.0004 22 1 3.2648 0.6575 -3.0909 23 1 2.0000 0.2225 -2.0741 24 1 6.7835 -0.0586 -3.1295 25 1 7.0702 -1.3982 -1.2833 26 1 4.6855 -2.7887 2.3148 27 1 3.0268 -2.1890 2.0756 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238659372.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:33 Heat of formation + Delta-G solvation = -105.632091 kcal Electronic energy + Delta-G solvation = -18025.030813 eV Core-core repulsion = 14670.901647 eV Total energy + Delta-G solvation = -3354.129166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.038 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.91507 -47.87327 -40.90070 -36.96908 -36.62021 -35.29223 -33.51480 -31.38607 -29.54145 -27.19704 -25.61087 -23.19677 -21.94040 -20.09493 -18.83145 -18.11508 -17.85338 -17.69131 -17.11216 -16.70042 -16.01421 -15.54469 -15.00160 -14.88641 -14.77417 -14.29076 -14.24026 -14.06398 -13.96203 -13.59690 -13.32193 -13.10075 -12.80840 -12.32665 -11.87078 -11.68799 -11.29363 -11.17774 -11.03802 -10.14311 -9.66606 -8.92978 -8.74550 -6.43501 0.14697 0.81671 1.27876 1.32688 1.39332 1.68010 2.03499 2.54969 2.94312 2.99812 3.31062 3.42075 3.72135 3.83409 4.07295 4.22549 4.41816 4.57495 4.73676 4.90119 5.07430 5.17740 5.44126 5.83977 6.19584 6.35711 6.59446 6.71047 6.87326 7.50690 8.23052 Molecular weight = 262.04amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.011473 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.841272 B = 2439.997645 C = 3573.135670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.052 3.948 3 Si 0.943 3.057 4 H -0.239 1.239 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.472 4.472 8 H 0.073 0.927 9 C -0.017 4.017 10 C 0.200 3.800 11 N -0.853 5.853 12 C -0.296 4.296 13 C 0.322 3.678 14 F -0.214 7.214 15 F -0.216 7.216 16 C 0.086 3.914 17 N -0.502 5.502 18 C 0.035 3.965 19 C 0.056 3.944 20 Cl -0.203 7.203 21 H 0.291 0.709 22 H 0.398 0.602 23 H 0.402 0.598 24 H 0.167 0.833 25 H 0.183 0.817 26 H 0.112 0.888 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.107 2.410 -3.064 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.163 1.163 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.504 4.504 8 H 0.091 0.909 9 C -0.025 4.025 10 C 0.086 3.914 11 N -0.397 5.397 12 C -0.307 4.307 13 C 0.268 3.732 14 F -0.195 7.195 15 F -0.197 7.197 16 C -0.076 4.076 17 N -0.213 5.213 18 C -0.101 4.101 19 C -0.007 4.007 20 Cl -0.177 7.177 21 H 0.101 0.899 22 H 0.228 0.772 23 H 0.236 0.764 24 H 0.184 0.816 25 H 0.200 0.800 26 H 0.130 0.870 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.295 1.899 -2.554 9.825 hybrid contribution -1.265 1.204 -0.709 1.885 sum 8.030 3.103 -3.263 9.206 Atomic orbital electron populations 1.69743 1.08519 1.30882 1.38142 1.26438 0.95052 1.02607 0.92057 0.86007 0.78751 0.78436 0.80059 1.16322 1.21559 1.20130 1.18915 0.92864 0.95729 1.42905 0.90876 1.18214 0.94877 0.97107 0.92264 1.18349 0.89706 0.93170 0.90178 1.42763 1.10615 1.55410 1.30931 1.20859 0.93648 1.12098 1.04047 1.20556 0.99168 0.73847 0.79581 1.92960 1.85595 1.88115 1.52833 1.92955 1.96255 1.34422 1.96073 1.22222 0.99885 0.94538 0.90980 1.67014 1.16185 1.20788 1.17267 1.21093 0.88387 1.03170 0.97417 1.22701 1.02026 0.81478 0.94458 1.98675 1.92646 1.31941 1.94423 0.89852 0.77165 0.76446 0.81606 0.79978 0.87014 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.70 13.93 21.83 0.30 -42.39 15 2 C 0.05 2.54 4.16 85.25 0.35 2.89 15 3 Si 0.94 40.23 24.19 68.60 1.66 41.88 15 4 H -0.24 -9.41 6.09 99.48 0.61 -8.81 15 5 H -0.29 -12.07 7.11 99.48 0.71 -11.36 15 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 7 C -0.47 -23.77 7.85 23.39 0.18 -23.58 15 8 H 0.07 4.03 7.94 -2.91 -0.02 4.01 15 9 C -0.02 -0.79 4.65 -21.07 -0.10 -0.89 15 10 C 0.20 8.52 5.23 39.25 0.21 8.72 15 11 N -0.85 -34.22 6.09 -50.05 -0.30 -34.52 15 12 C -0.30 -10.68 5.39 -19.69 -0.11 -10.79 15 13 C 0.32 9.03 4.95 71.24 0.35 9.38 15 14 F -0.21 -6.53 16.36 44.97 0.74 -5.80 15 15 F -0.22 -6.65 16.36 44.97 0.74 -5.92 15 16 C 0.09 2.97 10.80 84.58 0.91 3.88 15 17 N -0.50 -20.05 10.24 -182.15 -1.87 -21.92 15 18 C 0.03 1.50 6.23 43.19 0.27 1.77 15 19 C 0.06 2.16 6.44 71.24 0.46 2.62 15 20 Cl -0.20 -7.85 29.13 -2.72 -0.08 -7.93 15 21 H 0.29 13.40 8.30 -92.71 -0.77 12.64 15 22 H 0.40 14.25 6.45 -92.70 -0.60 13.65 15 23 H 0.40 17.05 5.16 -92.71 -0.48 16.57 15 24 H 0.17 2.93 7.88 -2.38 -0.02 2.91 15 25 H 0.18 4.43 7.93 -2.91 -0.02 4.41 15 26 H 0.11 3.72 8.14 -2.39 -0.02 3.70 15 27 H 0.10 4.01 7.20 -2.39 -0.02 3.99 15 Total: -1.00 -56.61 251.31 3.79 -52.82 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.07 Total: 29.77 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 2.53 Total: -5.99 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -1.87 Total: -98.84 kcal Atomic # 9 Polarization: -13.19 SS G_CDS: 1.47 Total: -11.72 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.66 Total: 41.88 kcal Atomic # 17 Polarization: -7.85 SS G_CDS: -0.08 Total: -7.93 kcal Total: -56.61 3.79 -52.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238659372.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.812 kcal (2) G-P(sol) polarization free energy of solvation -56.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds