Wall clock time and date at job start Mon Mar 30 2020 06:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36916 * 122.47865 * 2 1 4 4 C 1.39875 * 124.82563 * 359.97438 * 3 2 1 5 5 H 1.07997 * 120.00402 * 0.02562 * 4 3 2 6 6 C 1.40224 * 119.99803 * 179.97438 * 4 3 2 7 7 N 1.30737 * 120.00292 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99634 * 180.02562 * 6 4 3 9 9 H 1.48490 * 109.47268 * 60.00068 * 8 6 4 10 10 H 1.48503 * 109.46561 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46843 * 299.99828 * 8 6 4 12 12 S 1.75460 * 110.35074 * 179.97438 * 3 2 1 13 13 C 1.75976 * 91.78870 * 0.02562 * 12 3 2 14 14 C 1.39850 * 122.48394 * 179.97438 * 2 1 3 15 15 C 1.41809 * 128.47080 * 0.04095 * 14 2 1 16 16 C 1.37225 * 120.72239 * 179.97438 * 15 14 2 17 17 C 1.38411 * 120.74767 * 359.78474 * 16 15 14 18 18 C 1.39359 * 120.06012 * 0.45239 * 17 16 15 19 19 C 1.47326 * 119.97623 * 179.80482 * 18 17 16 20 20 O 1.21521 * 120.00020 * 179.72697 * 19 18 17 21 21 O 1.34771 * 119.99553 * 359.72410 * 19 18 17 22 22 H 1.08999 * 109.47334 * 270.02666 * 1 2 3 23 23 H 1.09006 * 109.47435 * 30.02442 * 1 2 3 24 24 H 1.09001 * 109.47247 * 150.02295 * 1 2 3 25 25 H 0.96997 * 119.99854 * 179.97438 * 7 6 4 26 26 H 1.08005 * 119.64067 * 0.02562 * 15 14 2 27 27 H 1.07997 * 119.62767 * 180.02562 * 16 15 14 28 28 H 1.07993 * 119.96954 * 180.23996 * 17 16 15 29 29 H 0.96702 * 116.99627 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2422 1.1550 0.0000 4 6 1.7025 2.4455 -0.0005 5 1 0.6313 2.5828 -0.0005 6 6 2.5523 3.5608 0.0001 7 7 3.8491 3.3946 0.0016 8 14 1.8315 5.2842 0.0001 9 1 0.9942 5.4705 1.2122 10 1 2.9323 6.2810 0.0014 11 1 0.9953 5.4709 -1.2127 12 16 3.9576 0.7864 0.0007 13 6 3.6418 -0.9448 0.0002 14 6 2.2580 -1.1797 0.0005 15 6 1.7953 -2.5202 0.0003 16 6 2.6816 -3.5678 0.0004 17 6 4.0468 -3.3397 -0.0038 18 6 4.5366 -2.0350 0.0014 19 6 5.9900 -1.7944 0.0012 20 8 6.4176 -0.6569 0.0007 21 8 6.8454 -2.8359 0.0017 22 1 -0.3634 0.0005 1.0276 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 4.4369 4.1662 0.0017 26 1 0.7336 -2.7188 -0.0007 27 1 2.3097 -4.5817 -0.0002 28 1 4.7330 -4.1736 -0.0076 29 1 7.7899 -2.6283 0.0012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396348607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:54 Heat of formation + Delta-G solvation = -80.317766 kcal Electronic energy + Delta-G solvation = -16787.493969 eV Core-core repulsion = 13958.442999 eV Total energy + Delta-G solvation = -2829.050969 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.65034 -38.04747 -35.56134 -35.25673 -33.52806 -30.39559 -29.31791 -27.76322 -25.07125 -23.48596 -21.97617 -20.49968 -18.80755 -17.62223 -17.21942 -16.50567 -15.78647 -15.04561 -14.91054 -14.29967 -13.95633 -13.76053 -12.92318 -12.85619 -12.66106 -11.84035 -11.73892 -11.64486 -11.62461 -11.57266 -11.04049 -10.83301 -10.68483 -10.31813 -10.25791 -9.99896 -9.90554 -9.34971 -8.86350 -8.51237 -7.49721 -7.20072 -6.41061 -4.68170 1.40614 2.21994 2.73470 2.83009 2.87624 3.11775 3.22344 3.53972 3.59864 3.63416 3.91956 4.57894 4.95481 5.61701 5.72372 5.90411 6.18887 6.33894 6.49820 6.56007 6.62639 6.75699 6.80425 6.88493 7.00284 7.02611 7.11369 7.28168 7.48687 7.68921 7.79302 7.97015 8.27738 8.40237 8.46006 9.62411 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.024518 B = 0.007670 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.740429 B = 3649.755287 C = 4776.351566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.340 4.340 3 C 0.034 3.966 4 C -0.374 4.374 5 H 0.101 0.899 6 C 0.051 3.949 7 N -0.770 5.770 8 Si 0.939 3.061 9 H -0.259 1.259 10 H -0.272 1.272 11 H -0.258 1.258 12 S 0.204 5.796 13 C -0.215 4.215 14 C 0.014 3.986 15 C -0.119 4.119 16 C -0.129 4.129 17 C -0.132 4.132 18 C -0.076 4.076 19 C 0.516 3.484 20 O -0.506 6.506 21 O -0.519 6.519 22 H 0.031 0.969 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.304 0.696 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -3.978 -0.048 4.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.346 4.346 3 C -0.085 4.085 4 C -0.407 4.407 5 H 0.119 0.881 6 C -0.171 4.171 7 N -0.396 5.396 8 Si 0.761 3.239 9 H -0.183 1.183 10 H -0.197 1.197 11 H -0.183 1.183 12 S 0.468 5.532 13 C -0.331 4.331 14 C 0.006 3.994 15 C -0.139 4.139 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.083 4.083 19 C 0.362 3.638 20 O -0.395 6.395 21 O -0.331 6.331 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.137 0.863 29 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 1.731 -2.691 -0.046 3.201 hybrid contribution -0.819 -0.127 0.009 0.828 sum 0.913 -2.818 -0.038 2.963 Atomic orbital electron populations 1.19809 0.92300 0.99407 0.98767 1.18265 0.94976 0.89927 1.31453 1.21642 0.96328 0.95901 0.94656 1.19338 0.95747 0.88501 1.37114 0.88139 1.26393 0.94490 1.03748 0.92487 1.68588 1.04126 1.35115 1.31742 0.85799 0.79548 0.78008 0.80502 1.18270 1.19660 1.18268 1.85688 1.03070 0.88484 1.75958 1.23860 0.95970 1.02230 1.11045 1.17785 0.90916 0.93239 0.97470 1.21013 0.98414 0.91394 1.03081 1.20456 0.92991 0.97841 1.03678 1.20789 0.95391 0.94433 1.04602 1.18081 0.86645 0.93460 1.10093 1.21283 0.88066 0.82033 0.72468 1.90879 1.79057 1.23459 1.46125 1.84614 1.21760 1.40028 1.86677 0.94998 0.93554 0.94705 0.88258 0.87382 0.87178 0.86340 0.74043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.92 9.59 36.00 0.35 -0.57 15 2 C -0.34 -8.34 5.95 -104.50 -0.62 -8.96 15 3 C 0.03 0.88 6.11 -39.45 -0.24 0.64 15 4 C -0.37 -9.11 8.83 -38.22 -0.34 -9.45 15 5 H 0.10 2.29 6.66 -52.49 -0.35 1.94 15 6 C 0.05 1.16 5.50 -17.27 -0.09 1.07 15 7 N -0.77 -18.38 10.58 55.56 0.59 -17.79 15 8 Si 0.94 16.88 29.56 -169.99 -5.03 11.85 15 9 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 10 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 11 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 12 S 0.20 5.27 18.22 -107.50 -1.96 3.31 15 13 C -0.22 -5.31 6.34 -37.72 -0.24 -5.55 15 14 C 0.01 0.33 5.84 -107.13 -0.63 -0.29 15 15 C -0.12 -2.44 9.67 -38.59 -0.37 -2.81 15 16 C -0.13 -2.38 9.97 -39.89 -0.40 -2.77 15 17 C -0.13 -2.53 9.61 -39.10 -0.38 -2.91 15 18 C -0.08 -1.68 5.89 -104.72 -0.62 -2.30 15 19 C 0.52 10.55 8.26 34.43 0.28 10.83 15 20 O -0.51 -11.65 15.73 -19.28 -0.30 -11.95 15 21 O -0.52 -8.03 12.65 -40.69 -0.51 -8.54 15 22 H 0.03 0.63 8.14 -51.93 -0.42 0.20 15 23 H 0.05 0.93 6.89 -51.93 -0.36 0.57 15 24 H 0.03 0.65 7.32 -51.93 -0.38 0.27 15 25 H 0.30 6.53 8.29 -40.82 -0.34 6.19 15 26 H 0.11 1.97 7.38 -52.48 -0.39 1.58 15 27 H 0.11 1.63 8.06 -52.49 -0.42 1.21 15 28 H 0.12 1.96 7.58 -52.49 -0.40 1.56 15 29 H 0.40 4.12 9.11 45.56 0.42 4.54 15 LS Contribution 269.04 15.07 4.05 4.05 Total: -1.00 -28.89 269.04 -7.89 -36.78 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -1.44 Total: 5.35 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -3.29 Total: -23.07 kcal Atomic # 7 Polarization: -18.38 SS G_CDS: 0.59 Total: -17.79 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.82 Total: -20.50 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.96 Total: 3.31 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.89 -7.89 -36.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396348607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.539 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds