Wall clock time and date at job start Mon Mar 30 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.35111 * 126.28392 * 90.02287 * 10 9 7 12 12 N 1.30359 * 108.99089 * 179.97438 * 11 10 9 13 13 C 1.34857 * 109.19161 * 359.97438 * 12 11 10 14 14 C 1.48373 * 126.14805 * 180.02562 * 13 12 11 15 15 C 1.39359 * 120.10617 * 179.69676 * 14 13 12 16 16 C 1.37999 * 119.88892 * 179.78882 * 15 14 13 17 17 C 1.38435 * 120.10749 * 0.49108 * 16 15 14 18 18 Cl 1.73601 * 119.89069 * 179.76298 * 17 16 15 19 19 C 1.38439 * 120.22235 * 359.74098 * 17 16 15 20 20 C 1.37996 * 120.10882 * 0.02647 * 19 17 16 21 21 C 1.35864 * 107.69844 * 359.75557 * 13 12 11 22 22 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 24 24 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 25 25 H 1.07994 * 125.50607 * 359.95666 * 11 10 9 26 26 H 1.08004 * 120.05530 * 0.02562 * 15 14 13 27 27 H 1.07994 * 119.94521 * 180.20607 * 16 15 14 28 28 H 1.08006 * 119.94805 * 180.02562 * 19 17 16 29 29 H 1.08004 * 120.05455 * 180.02562 * 20 19 17 30 30 H 1.07992 * 126.65530 * 180.25791 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7223 -4.2208 1.0897 12 7 3.5308 -5.1671 0.7022 13 6 3.5595 -5.2013 -0.6457 14 6 4.3556 -6.1342 -1.4807 15 6 4.2851 -6.0621 -2.8706 16 6 5.0308 -6.9291 -3.6430 17 6 5.8402 -7.8761 -3.0392 18 17 6.7712 -8.9680 -4.0162 19 6 5.9100 -7.9550 -1.6588 20 6 5.1718 -7.0893 -0.8777 21 6 2.7237 -4.2319 -1.1014 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.5032 -3.9641 2.1155 26 1 3.6508 -5.3263 -3.3426 27 1 4.9794 -6.8717 -4.7202 28 1 6.5432 -8.6953 -1.1924 29 1 5.2272 -7.1514 0.1991 30 1 2.5136 -3.9948 -2.1338 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005907928.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:05 Heat of formation + Delta-G solvation = 62.804592 kcal Electronic energy + Delta-G solvation = -15936.415228 eV Core-core repulsion = 13143.819555 eV Total energy + Delta-G solvation = -2792.595673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.36807 -38.92056 -36.43331 -34.20989 -32.39504 -31.27826 -30.85468 -28.28819 -27.04719 -23.64647 -22.74773 -22.56569 -20.09246 -19.76150 -17.31850 -16.87675 -16.18190 -15.17722 -15.11890 -14.57831 -14.34784 -13.64511 -13.43436 -13.40792 -13.18313 -13.02203 -12.51460 -11.86798 -11.62628 -11.48705 -11.46800 -11.14201 -11.00226 -10.76471 -10.44404 -10.10974 -9.46367 -9.12688 -8.96802 -8.80422 -8.62894 -7.40829 -6.43278 -4.52499 1.07819 1.40954 2.15973 2.80352 3.10389 3.19297 3.24338 3.43173 3.76964 4.17677 4.19277 4.74494 4.89458 4.92503 4.96390 5.37589 5.44109 5.58492 5.64706 5.78881 5.95260 6.13264 6.20441 6.31262 6.41504 6.72396 6.78999 6.88706 7.12624 7.37452 7.50852 7.68128 7.93351 8.54522 8.63763 9.16616 10.64827 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.037267 B = 0.003660 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.159922 B = 7647.495397 C = 7981.388667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.229 3.771 10 N -0.421 5.421 11 C 0.184 3.816 12 N -0.499 5.499 13 C -0.008 4.008 14 C 0.034 3.966 15 C -0.109 4.109 16 C -0.106 4.106 17 C -0.051 4.051 18 Cl -0.086 7.086 19 C -0.109 4.109 20 C -0.094 4.094 21 C -0.014 4.014 22 H 0.269 0.731 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.199 0.801 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 -11.984 -4.917 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.110 3.890 10 N -0.097 5.097 11 C -0.099 4.099 12 N -0.217 5.217 13 C -0.136 4.136 14 C 0.033 3.967 15 C -0.129 4.129 16 C -0.125 4.125 17 C -0.077 4.077 18 Cl -0.057 7.057 19 C -0.128 4.128 20 C -0.112 4.112 21 C -0.154 4.154 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.216 0.784 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.156 0.844 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.562 -12.303 -4.430 15.105 hybrid contribution -0.081 1.537 -0.587 1.647 sum 7.481 -10.766 -5.017 14.037 Atomic orbital electron populations 1.69923 1.06125 1.27869 1.48628 1.24955 0.94985 0.99698 0.94058 0.86276 0.80064 0.82273 0.77990 1.19448 1.20540 1.20501 1.21327 0.93832 0.89569 1.53745 0.91464 1.19885 0.87092 0.81847 1.00171 1.46099 1.32620 1.25491 1.05533 1.24705 0.97315 0.93657 0.94262 1.70141 1.20264 1.20711 1.10633 1.18865 1.03772 1.00547 0.90466 1.18020 0.94022 0.93121 0.91546 1.21080 0.99812 0.99409 0.92567 1.20863 0.96483 0.94872 1.00255 1.20881 0.99220 0.95995 0.91639 1.98343 1.72709 1.63473 1.71181 1.20956 1.00334 1.00128 0.91351 1.21189 0.95367 0.93996 1.00692 1.22605 1.01473 0.97860 0.93470 0.92109 0.93184 0.92857 0.78398 0.84965 0.85129 0.85245 0.84380 0.81483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.70 13.29 55.43 0.74 -22.97 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.55 -13.92 9.39 -34.44 -0.32 -14.25 16 8 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.23 5.24 5.89 -5.19 -0.03 5.21 16 10 N -0.42 -8.63 2.73 -119.59 -0.33 -8.96 16 11 C 0.18 3.54 12.54 -90.43 -1.13 2.41 16 12 N -0.50 -9.72 10.94 -11.18 -0.12 -9.84 16 13 C -0.01 -0.15 6.86 -83.22 -0.57 -0.72 16 14 C 0.03 0.54 5.88 -104.89 -0.62 -0.08 16 15 C -0.11 -1.47 9.56 -39.25 -0.38 -1.85 16 16 C -0.11 -1.29 9.81 -39.60 -0.39 -1.68 16 17 C -0.05 -0.63 6.32 -39.43 -0.25 -0.88 16 18 Cl -0.09 -0.95 28.95 -51.86 -1.50 -2.45 16 19 C -0.11 -1.37 9.81 -39.60 -0.39 -1.76 16 20 C -0.09 -1.35 9.70 -39.25 -0.38 -1.73 16 21 C -0.01 -0.26 10.95 -16.23 -0.18 -0.44 16 22 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 23 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.20 3.24 8.06 -52.49 -0.42 2.81 16 26 H 0.13 1.57 7.02 -52.48 -0.37 1.21 16 27 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 28 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.14 1.99 7.86 -52.48 -0.41 1.58 16 30 H 0.17 2.72 7.29 -52.49 -0.38 2.34 16 LS Contribution 287.68 15.07 4.34 4.34 Total: -1.00 -27.40 287.68 -9.45 -36.85 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -2.82 Total: 2.14 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -4.73 Total: -14.12 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.29 Total: -41.76 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.40 -9.45 -36.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005907928.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.658 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds