Wall clock time and date at job start Mon Mar 30 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.35111 * 126.28392 * 90.02287 * 10 9 7 12 12 N 1.30359 * 108.99089 * 179.97438 * 11 10 9 13 13 C 1.34857 * 109.19161 * 359.97438 * 12 11 10 14 14 C 1.48373 * 126.14805 * 180.02562 * 13 12 11 15 15 C 1.39359 * 120.10617 * 179.69676 * 14 13 12 16 16 C 1.37999 * 119.88892 * 179.78882 * 15 14 13 17 17 C 1.38435 * 120.10749 * 0.49108 * 16 15 14 18 18 Cl 1.73601 * 119.89069 * 179.76298 * 17 16 15 19 19 C 1.38439 * 120.22235 * 359.74098 * 17 16 15 20 20 C 1.37996 * 120.10882 * 0.02647 * 19 17 16 21 21 C 1.35864 * 107.69844 * 359.75557 * 13 12 11 22 22 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 24 24 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 25 25 H 1.07994 * 125.50607 * 359.95666 * 11 10 9 26 26 H 1.08004 * 120.05530 * 0.02562 * 15 14 13 27 27 H 1.07994 * 119.94521 * 180.20607 * 16 15 14 28 28 H 1.08006 * 119.94805 * 180.02562 * 19 17 16 29 29 H 1.08004 * 120.05455 * 180.02562 * 20 19 17 30 30 H 1.07992 * 126.65530 * 180.25791 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7223 -4.2208 1.0897 12 7 3.5308 -5.1671 0.7022 13 6 3.5595 -5.2013 -0.6457 14 6 4.3556 -6.1342 -1.4807 15 6 4.2851 -6.0621 -2.8706 16 6 5.0308 -6.9291 -3.6430 17 6 5.8402 -7.8761 -3.0392 18 17 6.7712 -8.9680 -4.0162 19 6 5.9100 -7.9550 -1.6588 20 6 5.1718 -7.0893 -0.8777 21 6 2.7237 -4.2319 -1.1014 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.5032 -3.9641 2.1155 26 1 3.6508 -5.3263 -3.3426 27 1 4.9794 -6.8717 -4.7202 28 1 6.5432 -8.6953 -1.1924 29 1 5.2272 -7.1514 0.1991 30 1 2.5136 -3.9948 -2.1338 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005907928.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:05 Heat of formation + Delta-G solvation = 51.501027 kcal Electronic energy + Delta-G solvation = -15936.905388 eV Core-core repulsion = 13143.819555 eV Total energy + Delta-G solvation = -2793.085833 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.84562 -39.97703 -37.39231 -35.96525 -34.09736 -32.48684 -31.95280 -29.83478 -28.65076 -25.35334 -23.91943 -23.79539 -21.54992 -21.08577 -18.91453 -18.45773 -17.52914 -16.55941 -16.22483 -16.16257 -15.89198 -14.95503 -14.55916 -14.53366 -14.51056 -14.34693 -14.19061 -13.66236 -13.12197 -12.75120 -12.61831 -12.53376 -12.45861 -12.28235 -11.85834 -11.72962 -10.99031 -10.73561 -10.55106 -10.05388 -9.97917 -8.74366 -8.37878 -6.54718 -0.03287 0.39107 1.18890 1.32951 1.36807 1.41894 1.52085 2.11707 2.18405 2.36643 2.94699 2.97640 3.48960 3.85202 3.99710 4.15055 4.18624 4.37401 4.42406 4.58720 4.69822 4.78511 4.90353 5.07111 5.20383 5.28725 5.50564 5.53279 5.68993 5.76430 5.80296 5.92672 6.31935 6.61329 7.14031 7.19050 8.69314 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.037267 B = 0.003660 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.159922 B = 7647.495397 C = 7981.388667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.559 4.559 8 H 0.055 0.945 9 C 0.244 3.756 10 N -0.434 5.434 11 C 0.175 3.825 12 N -0.512 5.512 13 C -0.006 4.006 14 C 0.004 3.996 15 C -0.107 4.107 16 C -0.103 4.103 17 C -0.050 4.050 18 Cl -0.070 7.070 19 C -0.107 4.107 20 C -0.100 4.100 21 C -0.033 4.033 22 H 0.273 0.727 23 H 0.039 0.961 24 H 0.045 0.955 25 H 0.219 0.781 26 H 0.145 0.855 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.132 0.868 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 -12.427 -5.956 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.597 4.597 8 H 0.073 0.927 9 C 0.124 3.876 10 N -0.111 5.111 11 C -0.108 4.108 12 N -0.231 5.231 13 C -0.134 4.134 14 C 0.003 3.997 15 C -0.126 4.126 16 C -0.122 4.122 17 C -0.077 4.077 18 Cl -0.041 7.041 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.171 4.171 22 H 0.083 0.917 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.235 0.765 26 H 0.163 0.837 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.149 0.851 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.739 -12.772 -5.479 16.417 hybrid contribution -0.360 1.525 -0.323 1.600 sum 8.379 -11.247 -5.802 15.178 Atomic orbital electron populations 1.69996 1.07285 1.28857 1.49285 1.25697 0.95719 1.02683 0.93592 0.85335 0.78538 0.78542 0.78269 1.19694 1.19871 1.19834 1.21498 0.93379 0.90989 1.53817 0.92704 1.19486 0.87078 0.81919 0.99089 1.45980 1.33054 1.25532 1.06541 1.25208 0.97137 0.93516 0.94986 1.70173 1.20560 1.20924 1.11455 1.19314 1.03292 1.00481 0.90310 1.18121 0.95337 0.93922 0.92365 1.21246 0.99877 0.99777 0.91723 1.21132 0.95567 0.94036 1.01439 1.21061 0.98824 0.95919 0.91864 1.98354 1.72223 1.62864 1.70660 1.21132 0.99963 0.99927 0.91511 1.21193 0.95719 0.94331 1.00663 1.22985 1.01925 0.98177 0.94008 0.91746 0.94305 0.93703 0.76461 0.83731 0.82665 0.83171 0.85055 0.79699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.96 13.29 21.45 0.28 -48.68 16 2 C 0.02 1.26 5.46 84.65 0.46 1.73 16 3 Si 0.97 40.77 29.54 68.60 2.03 42.80 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.56 -28.70 9.39 25.60 0.24 -28.46 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.24 11.40 5.89 85.63 0.50 11.90 16 10 N -0.43 -18.00 2.73 -532.29 -1.45 -19.45 16 11 C 0.17 6.77 12.54 180.28 2.26 9.03 16 12 N -0.51 -20.05 10.94 -189.29 -2.07 -22.12 16 13 C -0.01 -0.21 6.86 40.83 0.28 0.07 16 14 C 0.00 0.12 5.88 -20.04 -0.12 0.00 16 15 C -0.11 -2.71 9.56 22.48 0.21 -2.49 16 16 C -0.10 -2.24 9.81 22.26 0.22 -2.03 16 17 C -0.05 -1.11 6.32 22.36 0.14 -0.97 16 18 Cl -0.07 -1.36 28.95 -2.72 -0.08 -1.43 16 19 C -0.11 -2.47 9.81 22.26 0.22 -2.25 16 20 C -0.10 -2.80 9.70 22.48 0.22 -2.58 16 21 C -0.03 -1.24 10.95 83.38 0.91 -0.33 16 22 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 23 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 25 H 0.22 7.15 8.06 -2.91 -0.02 7.13 16 26 H 0.14 3.20 7.02 -2.91 -0.02 3.18 16 27 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.13 3.78 7.86 -2.91 -0.02 3.75 16 30 H 0.19 5.98 7.29 -2.91 -0.02 5.96 16 Total: -1.00 -57.23 287.68 5.42 -51.81 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.15 Total: 13.45 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 5.55 Total: -16.38 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -3.24 Total: -90.25 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.43 kcal Total: -57.23 5.42 -51.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005907928.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.314 kcal (2) G-P(sol) polarization free energy of solvation -57.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds