Wall clock time and date at job start Mon Mar 30 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38798 * 119.61074 * 2 1 4 4 C 1.37739 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.39273 * 120.05623 * 0.06224 * 4 3 2 6 6 S 1.76178 * 131.28787 * 179.97438 * 5 4 3 7 7 C 1.75815 * 90.42577 * 179.97438 * 6 5 4 8 8 N 1.38025 * 124.82019 * 179.97438 * 7 6 5 9 9 C 1.34786 * 119.99933 * 0.02562 * 8 7 6 10 10 O 1.21746 * 119.99479 * 359.72859 * 9 8 7 11 11 C 1.41745 * 119.99917 * 179.97438 * 9 8 7 12 12 H 1.08000 * 119.99630 * 359.72612 * 11 9 8 13 13 C 1.40141 * 119.99863 * 179.72927 * 11 9 8 14 14 N 1.30628 * 120.00406 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00162 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47109 * 89.99452 * 15 13 11 17 17 H 1.48498 * 109.47278 * 209.99882 * 15 13 11 18 18 H 1.48507 * 109.46754 * 329.99713 * 15 13 11 19 19 N 1.28996 * 110.36139 * 0.23368 * 7 6 5 20 20 C 1.34530 * 117.92669 * 359.57028 * 19 7 6 21 21 C 1.36112 * 119.61553 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47578 * 269.97656 * 1 2 3 23 23 H 1.09005 * 109.47341 * 29.97782 * 1 2 3 24 24 H 1.09001 * 109.47045 * 149.97707 * 1 2 3 25 25 H 1.07998 * 119.99686 * 0.04940 * 3 2 1 26 26 H 1.08001 * 119.97215 * 180.02562 * 4 3 2 27 27 H 0.96995 * 120.00515 * 180.02562 * 8 7 6 28 28 H 0.96999 * 120.00406 * 180.02562 * 14 13 11 29 29 H 1.07999 * 119.73476 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2067 0.0000 4 6 3.5701 1.2161 0.0005 5 6 4.2759 0.0155 -0.0002 6 16 6.0063 -0.3158 -0.0005 7 6 5.6885 -2.0450 -0.0008 8 7 6.6605 -3.0250 -0.0016 9 6 7.9638 -2.6814 -0.0016 10 8 8.2836 -1.5067 -0.0060 11 6 8.9620 -3.6878 -0.0019 12 1 8.6782 -4.7298 0.0024 13 6 10.3171 -3.3306 -0.0077 14 7 10.6604 -2.0702 -0.0134 15 14 11.6326 -4.6568 -0.0088 16 1 11.9762 -5.0121 -1.4091 17 1 12.8446 -4.1524 0.6855 18 1 11.1229 -5.8602 0.6965 19 7 4.4179 -2.2679 -0.0056 20 6 3.5920 -1.2060 -0.0005 21 6 2.1796 -1.1833 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6464 2.1383 0.0008 26 1 4.1033 2.1554 0.0010 27 1 6.4057 -3.9609 -0.0021 28 1 11.5983 -1.8230 -0.0178 29 1 1.6290 -2.1124 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034797480.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:35 Heat of formation + Delta-G solvation = 8.418489 kcal Electronic energy + Delta-G solvation = -16252.724175 eV Core-core repulsion = 13459.813849 eV Total energy + Delta-G solvation = -2792.910326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71756 -38.46314 -36.45761 -33.62379 -32.71946 -31.86151 -29.34132 -27.28773 -26.48988 -23.56654 -22.23008 -20.84653 -20.12363 -17.96382 -17.38888 -16.16017 -16.07380 -15.31277 -14.70665 -14.62635 -14.15118 -13.95789 -13.60210 -13.28111 -12.85655 -12.75661 -12.21114 -11.77995 -11.62915 -11.41782 -11.39562 -11.09358 -10.96940 -10.56048 -10.21163 -9.46401 -9.36457 -9.12157 -8.99822 -8.14939 -7.48419 -7.32105 -6.67717 -5.22610 1.12495 1.58143 1.85636 2.62063 2.84736 2.97467 3.00412 3.04473 3.68057 3.98870 4.03576 4.22852 4.91440 5.01548 5.28614 5.34314 5.39730 5.60018 5.63325 5.77283 5.83216 6.04165 6.31049 6.52715 6.64374 6.80288 6.97741 7.08399 7.37071 7.40755 7.70558 8.29543 8.50295 8.83880 9.93626 10.19876 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.062811 B = 0.004475 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.677022 B = 6255.475768 C = 6686.003375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.078 4.078 3 C -0.140 4.140 4 C -0.052 4.052 5 C -0.261 4.261 6 S 0.177 5.823 7 C 0.361 3.639 8 N -0.634 5.634 9 C 0.527 3.473 10 O -0.542 6.542 11 C -0.519 4.519 12 H 0.080 0.920 13 C 0.085 3.915 14 N -0.736 5.736 15 Si 0.922 3.078 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.260 1.260 19 N -0.565 5.565 20 C 0.133 3.867 21 C -0.094 4.094 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.409 0.591 28 H 0.279 0.721 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.997 2.401 0.047 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.081 4.081 3 C -0.162 4.162 4 C -0.075 4.075 5 C -0.380 4.380 6 S 0.426 5.574 7 C -0.013 4.013 8 N -0.282 5.282 9 C 0.338 3.662 10 O -0.426 6.426 11 C -0.553 4.553 12 H 0.098 0.902 13 C -0.140 4.140 14 N -0.363 5.363 15 Si 0.745 3.255 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.184 1.184 19 N -0.292 5.292 20 C 0.011 3.989 21 C -0.116 4.116 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.245 0.755 28 H 0.090 0.910 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.628 3.308 0.040 10.180 hybrid contribution -0.356 -1.294 0.004 1.342 sum -9.984 2.014 0.044 10.185 Atomic orbital electron populations 1.20744 0.91223 1.02464 1.02051 1.19228 0.95746 0.92714 1.00408 1.20769 0.93400 0.97217 1.04794 1.20188 0.93492 0.95229 0.98573 1.24808 1.02295 0.98249 1.12659 1.86376 0.95352 0.99750 1.75899 1.23988 0.89025 0.94452 0.93817 1.43943 1.05123 1.07377 1.71751 1.17427 0.78597 0.90814 0.79339 1.90578 1.76985 1.19223 1.55836 1.19973 0.90088 0.93706 1.51572 0.90217 1.25824 0.99586 0.96300 0.92326 1.69964 1.18917 1.17285 1.30098 0.86109 0.79268 0.80740 0.79352 1.19210 1.19948 1.18411 1.66387 1.00482 1.32631 1.29691 1.18777 0.94163 0.86114 0.99890 1.20066 0.90201 0.97832 1.03486 0.91436 0.91715 0.91745 0.85993 0.86163 0.75454 0.90978 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.98 36.00 0.36 -0.70 15 2 C -0.08 -1.08 5.83 -105.18 -0.61 -1.69 15 3 C -0.14 -1.92 9.69 -39.56 -0.38 -2.31 15 4 C -0.05 -0.84 10.07 -39.38 -0.40 -1.23 15 5 C -0.26 -5.07 6.53 -38.54 -0.25 -5.33 15 6 S 0.18 3.87 20.38 -107.50 -2.19 1.68 15 7 C 0.36 8.19 8.29 -88.81 -0.74 7.45 15 8 N -0.63 -14.40 5.36 -14.85 -0.08 -14.48 15 9 C 0.53 13.84 7.53 -14.92 -0.11 13.72 15 10 O -0.54 -15.70 12.30 5.15 0.06 -15.63 15 11 C -0.52 -13.14 9.31 -37.53 -0.35 -13.49 15 12 H 0.08 1.81 7.85 -52.49 -0.41 1.40 15 13 C 0.08 2.11 5.50 -17.35 -0.10 2.01 15 14 N -0.74 -19.75 11.73 55.56 0.65 -19.09 15 15 Si 0.92 18.04 29.56 -169.99 -5.02 13.01 15 16 H -0.27 -5.14 7.11 56.52 0.40 -4.73 15 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 18 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 19 N -0.56 -12.21 10.60 -11.10 -0.12 -12.33 15 20 C 0.13 2.66 6.95 -84.88 -0.59 2.07 15 21 C -0.09 -1.55 9.66 -39.20 -0.38 -1.93 15 22 H 0.07 0.60 8.14 -51.93 -0.42 0.17 15 23 H 0.06 0.54 8.08 -51.93 -0.42 0.12 15 24 H 0.06 0.58 8.07 -51.93 -0.42 0.16 15 25 H 0.12 1.29 8.06 -52.49 -0.42 0.87 15 26 H 0.12 1.66 8.06 -52.49 -0.42 1.24 15 27 H 0.41 8.07 8.78 -40.82 -0.36 7.71 15 28 H 0.28 6.72 8.29 -40.82 -0.34 6.38 15 29 H 0.12 1.80 8.06 -52.49 -0.42 1.38 15 LS Contribution 273.96 15.07 4.13 4.13 Total: -1.00 -30.30 273.96 -8.55 -38.85 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -2.43 Total: 5.29 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -3.55 Total: -1.42 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.45 Total: -45.90 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.06 Total: -15.63 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.02 Total: 13.01 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -2.19 Total: 1.68 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.30 -8.55 -38.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034797480.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.265 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds