Wall clock time and date at job start Mon Mar 30 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38798 * 119.61074 * 2 1 4 4 C 1.37739 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.39273 * 120.05623 * 0.06224 * 4 3 2 6 6 S 1.76178 * 131.28787 * 179.97438 * 5 4 3 7 7 C 1.75815 * 90.42577 * 179.97438 * 6 5 4 8 8 N 1.38025 * 124.82019 * 179.97438 * 7 6 5 9 9 C 1.34786 * 119.99933 * 0.02562 * 8 7 6 10 10 O 1.21746 * 119.99479 * 359.72859 * 9 8 7 11 11 C 1.41745 * 119.99917 * 179.97438 * 9 8 7 12 12 H 1.08000 * 119.99630 * 359.72612 * 11 9 8 13 13 C 1.40141 * 119.99863 * 179.72927 * 11 9 8 14 14 N 1.30628 * 120.00406 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00162 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47109 * 89.99452 * 15 13 11 17 17 H 1.48498 * 109.47278 * 209.99882 * 15 13 11 18 18 H 1.48507 * 109.46754 * 329.99713 * 15 13 11 19 19 N 1.28996 * 110.36139 * 0.23368 * 7 6 5 20 20 C 1.34530 * 117.92669 * 359.57028 * 19 7 6 21 21 C 1.36112 * 119.61553 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47578 * 269.97656 * 1 2 3 23 23 H 1.09005 * 109.47341 * 29.97782 * 1 2 3 24 24 H 1.09001 * 109.47045 * 149.97707 * 1 2 3 25 25 H 1.07998 * 119.99686 * 0.04940 * 3 2 1 26 26 H 1.08001 * 119.97215 * 180.02562 * 4 3 2 27 27 H 0.96995 * 120.00515 * 180.02562 * 8 7 6 28 28 H 0.96999 * 120.00406 * 180.02562 * 14 13 11 29 29 H 1.07999 * 119.73476 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2067 0.0000 4 6 3.5701 1.2161 0.0005 5 6 4.2759 0.0155 -0.0002 6 16 6.0063 -0.3158 -0.0005 7 6 5.6885 -2.0450 -0.0008 8 7 6.6605 -3.0250 -0.0016 9 6 7.9638 -2.6814 -0.0016 10 8 8.2836 -1.5067 -0.0060 11 6 8.9620 -3.6878 -0.0019 12 1 8.6782 -4.7298 0.0024 13 6 10.3171 -3.3306 -0.0077 14 7 10.6604 -2.0702 -0.0134 15 14 11.6326 -4.6568 -0.0088 16 1 11.9762 -5.0121 -1.4091 17 1 12.8446 -4.1524 0.6855 18 1 11.1229 -5.8602 0.6965 19 7 4.4179 -2.2679 -0.0056 20 6 3.5920 -1.2060 -0.0005 21 6 2.1796 -1.1833 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6464 2.1383 0.0008 26 1 4.1033 2.1554 0.0010 27 1 6.4057 -3.9609 -0.0021 28 1 11.5983 -1.8230 -0.0178 29 1 1.6290 -2.1124 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034797480.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:35 Heat of formation + Delta-G solvation = -11.026869 kcal Electronic energy + Delta-G solvation = -16253.567389 eV Core-core repulsion = 13459.813849 eV Total energy + Delta-G solvation = -2793.753540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19180 -40.23899 -37.96669 -35.38035 -34.62077 -33.08671 -30.77409 -29.07485 -27.66084 -25.18194 -23.58226 -22.51723 -21.69506 -19.65457 -18.98068 -17.94126 -17.68653 -16.82444 -16.29855 -16.16347 -15.72755 -15.20909 -14.93167 -14.79358 -14.50983 -14.08250 -13.38005 -13.24187 -12.93797 -12.91825 -12.86160 -12.56705 -12.52855 -12.06839 -11.67597 -11.13023 -10.89241 -10.76781 -10.66615 -10.10372 -8.98841 -8.88335 -8.54386 -7.19807 -0.36536 0.22998 0.29610 1.06473 1.29858 1.40169 1.47874 1.57542 2.04067 2.26706 2.31720 2.80512 3.40934 3.53787 3.86496 4.09997 4.33051 4.43925 4.55856 4.77998 4.94398 5.06396 5.10776 5.22350 5.28064 5.31753 5.53786 5.63363 5.65506 5.82401 5.97545 6.55879 6.63903 7.06313 8.01112 8.36755 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.062811 B = 0.004475 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.677022 B = 6255.475768 C = 6686.003375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.067 4.067 3 C -0.116 4.116 4 C -0.067 4.067 5 C -0.264 4.264 6 S 0.124 5.876 7 C 0.337 3.663 8 N -0.633 5.633 9 C 0.514 3.486 10 O -0.581 6.581 11 C -0.541 4.541 12 H 0.101 0.899 13 C 0.033 3.967 14 N -0.787 5.787 15 Si 1.007 2.993 16 H -0.259 1.259 17 H -0.269 1.269 18 H -0.247 1.247 19 N -0.561 5.561 20 C 0.090 3.910 21 C -0.102 4.102 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.168 0.832 26 H 0.140 0.860 27 H 0.419 0.581 28 H 0.286 0.714 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.389 2.473 0.059 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.090 4.090 5 C -0.383 4.383 6 S 0.373 5.627 7 C -0.037 4.037 8 N -0.282 5.282 9 C 0.326 3.674 10 O -0.468 6.468 11 C -0.576 4.576 12 H 0.119 0.881 13 C -0.187 4.187 14 N -0.414 5.414 15 Si 0.826 3.174 16 H -0.184 1.184 17 H -0.194 1.194 18 H -0.170 1.170 19 N -0.288 5.288 20 C -0.030 4.030 21 C -0.123 4.123 22 H 0.103 0.897 23 H 0.107 0.893 24 H 0.092 0.908 25 H 0.186 0.814 26 H 0.158 0.842 27 H 0.257 0.743 28 H 0.097 0.903 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.101 3.374 0.052 12.563 hybrid contribution 0.035 -1.152 0.000 1.152 sum -12.066 2.222 0.051 12.269 Atomic orbital electron populations 1.20854 0.87587 1.04219 1.03618 1.19808 0.98228 0.91646 0.97328 1.21358 0.92374 0.99137 1.00867 1.20607 0.94803 0.94743 0.98807 1.24795 0.99957 0.99657 1.13851 1.86292 0.98813 1.00667 1.76934 1.24019 0.89362 0.94313 0.96002 1.43519 1.04423 1.07912 1.72336 1.17779 0.79782 0.90693 0.79182 1.90553 1.78376 1.20539 1.57295 1.20504 0.90751 0.94584 1.51750 0.88134 1.27062 1.01943 0.98811 0.90905 1.70095 1.19961 1.20046 1.31288 0.84852 0.75529 0.77327 0.79736 1.18352 1.19361 1.17019 1.66354 1.00174 1.33819 1.28435 1.19269 0.95575 0.85792 1.02412 1.20410 0.88647 0.99832 1.03457 0.89746 0.89282 0.90840 0.81440 0.84190 0.74276 0.90343 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.98 71.23 0.71 -0.80 15 2 C -0.07 -1.58 5.83 -20.23 -0.12 -1.70 15 3 C -0.12 -2.67 9.69 22.29 0.22 -2.46 15 4 C -0.07 -2.01 10.07 22.40 0.23 -1.78 15 5 C -0.26 -10.33 6.53 22.94 0.15 -10.18 15 6 S 0.12 5.75 20.38 -56.49 -1.15 4.60 15 7 C 0.34 16.09 8.29 179.71 1.49 17.58 15 8 N -0.63 -30.26 5.36 -319.09 -1.71 -31.97 15 9 C 0.51 28.39 7.53 85.11 0.64 29.03 15 10 O -0.58 -35.71 12.30 -4.49 -0.06 -35.76 15 11 C -0.54 -28.20 9.31 23.60 0.22 -27.98 15 12 H 0.10 4.60 7.85 -2.91 -0.02 4.58 15 13 C 0.03 1.68 5.50 85.33 0.47 2.15 15 14 N -0.79 -43.78 11.73 21.85 0.26 -43.52 15 15 Si 1.01 36.94 29.56 68.60 2.03 38.97 15 16 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 17 H -0.27 -9.52 7.11 99.48 0.71 -8.81 15 18 H -0.25 -8.45 7.11 99.48 0.71 -7.74 15 19 N -0.56 -24.99 10.60 -189.04 -2.00 -26.99 15 20 C 0.09 3.60 6.95 39.90 0.28 3.88 15 21 C -0.10 -3.15 9.66 22.52 0.22 -2.93 15 22 H 0.08 1.02 8.14 -2.39 -0.02 1.00 15 23 H 0.09 0.91 8.08 -2.38 -0.02 0.89 15 24 H 0.07 0.97 8.07 -2.39 -0.02 0.95 15 25 H 0.17 2.42 8.06 -2.91 -0.02 2.40 15 26 H 0.14 3.58 8.06 -2.91 -0.02 3.55 15 27 H 0.42 17.35 8.78 -92.71 -0.81 16.54 15 28 H 0.29 14.24 8.29 -92.71 -0.77 13.47 15 29 H 0.14 3.72 8.06 -2.91 -0.02 3.69 15 Total: -1.00 -69.99 273.96 2.25 -67.74 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.39 Total: 22.14 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 4.50 Total: 4.80 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -3.46 Total: -102.48 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.06 Total: -35.76 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.15 Total: 4.60 kcal Total: -69.99 2.25 -67.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034797480.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.716 kcal (2) G-P(sol) polarization free energy of solvation -69.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds