Wall clock time and date at job start Mon Mar 30 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47242 * 270.00500 * 3 2 1 5 5 H 1.48510 * 109.46600 * 30.00220 * 3 2 1 6 6 H 1.48498 * 109.47246 * 149.99595 * 3 2 1 7 7 C 1.38649 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99707 * 359.97438 * 7 2 1 9 9 O 1.34814 * 120.00276 * 179.97438 * 7 2 1 10 10 C 1.35720 * 117.00223 * 185.06072 * 9 7 2 11 11 C 1.39991 * 119.65862 * 354.35568 * 10 9 7 12 12 C 1.35891 * 120.92925 * 180.02562 * 11 10 9 13 13 C 1.40628 * 119.90075 * 359.97409 * 12 11 10 14 14 C 1.40507 * 121.14141 * 180.02562 * 13 12 11 15 15 C 1.36139 * 119.69313 * 179.13669 * 14 13 12 16 16 C 1.39369 * 120.99509 * 0.89473 * 15 14 13 17 17 C 1.36093 * 120.96490 * 359.40585 * 16 15 14 18 18 C 1.40603 * 119.66261 * 0.02562 * 17 16 15 19 19 C 1.37754 * 119.66125 * 174.37578 * 10 9 7 20 20 C 1.50699 * 120.24610 * 359.95424 * 19 10 9 21 21 Cl 1.80308 * 109.46711 * 90.00592 * 20 19 10 22 22 H 0.96995 * 120.00196 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.53748 * 0.02562 * 11 10 9 24 24 H 1.07998 * 120.05161 * 180.02562 * 12 11 10 25 25 H 1.08004 * 120.15226 * 0.02562 * 14 13 12 26 26 H 1.07999 * 119.50064 * 180.30104 * 15 14 13 27 27 H 1.07998 * 119.51262 * 179.42675 * 16 15 14 28 28 H 1.07997 * 120.17053 * 180.02562 * 17 16 15 29 29 H 1.08999 * 109.47356 * 330.00586 * 20 19 10 30 30 H 1.08994 * 109.46972 * 209.99900 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6526 0.7002 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0005 9 8 3.3570 -1.2007 -0.0011 10 6 3.9732 -2.4052 -0.1082 11 6 3.2091 -3.5781 -0.0920 12 6 3.7992 -4.7976 -0.1970 13 6 5.1965 -4.8916 -0.3247 14 6 5.8337 -6.1390 -0.4356 15 6 7.1868 -6.1949 -0.5756 16 6 7.9553 -5.0324 -0.5924 17 6 7.3738 -3.8070 -0.4813 18 6 5.9776 -3.7089 -0.3469 19 6 5.3441 -2.4611 -0.2315 20 6 6.1570 -1.1923 -0.2485 21 17 6.6305 -0.7594 1.4366 22 1 -0.4850 0.8400 0.0004 23 1 2.1354 -3.5128 0.0054 24 1 3.1960 -5.6933 -0.1832 25 1 5.2515 -7.0485 -0.4243 26 1 7.6729 -7.1551 -0.6655 27 1 9.0278 -5.1051 -0.6954 28 1 7.9816 -2.9144 -0.4962 29 1 5.5627 -0.3856 -0.6775 30 1 7.0532 -1.3431 -0.8503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035630821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:29 Heat of formation + Delta-G solvation = -0.710779 kcal Electronic energy + Delta-G solvation = -16842.641128 eV Core-core repulsion = 14014.998470 eV Total energy + Delta-G solvation = -2827.642658 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.11745 -38.25876 -35.50357 -34.97041 -33.04873 -32.45260 -29.60084 -29.07746 -26.30228 -25.18389 -22.90405 -21.98272 -20.48772 -18.49314 -17.33260 -16.73325 -16.07991 -15.07766 -14.52900 -14.27658 -14.08329 -13.86381 -13.36287 -13.21679 -12.84855 -12.63461 -12.60717 -12.36480 -12.21164 -11.63515 -11.09004 -10.81496 -10.71977 -10.39628 -10.32898 -9.95149 -9.80585 -9.49829 -9.35291 -8.93779 -7.85805 -7.16156 -6.59776 -4.24138 0.94495 1.60221 2.31213 3.08015 3.12913 3.17524 3.33988 3.55040 4.11087 4.58758 4.60425 4.94290 4.97985 5.16478 5.26228 5.34548 5.45419 5.51860 5.71741 5.77398 5.85806 5.97043 6.16348 6.29471 6.48244 6.65494 6.73332 6.85220 6.96627 7.02696 7.28464 7.42887 7.56259 7.82877 8.73589 9.30890 10.46391 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.007251 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.761469 B = 3860.368866 C = 4833.149077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.070 3.930 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.395 4.395 8 H 0.110 0.890 9 O -0.195 6.195 10 C 0.190 3.810 11 C -0.181 4.181 12 C -0.065 4.065 13 C -0.115 4.115 14 C -0.080 4.080 15 C -0.162 4.162 16 C -0.106 4.106 17 C -0.132 4.132 18 C 0.027 3.973 19 C -0.221 4.221 20 C 0.041 3.959 21 Cl -0.205 7.205 22 H 0.283 0.717 23 H 0.142 0.858 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.044 -6.844 -1.761 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.469 4.469 8 H 0.127 0.873 9 O -0.097 6.097 10 C 0.135 3.865 11 C -0.199 4.199 12 C -0.084 4.084 13 C -0.115 4.115 14 C -0.098 4.098 15 C -0.181 4.181 16 C -0.124 4.124 17 C -0.150 4.150 18 C 0.026 3.974 19 C -0.223 4.223 20 C -0.021 4.021 21 Cl -0.179 7.179 22 H 0.093 0.907 23 H 0.159 0.841 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.916 -6.402 -1.610 12.757 hybrid contribution 0.014 0.614 0.105 0.623 sum 10.930 -5.788 -1.505 12.459 Atomic orbital electron populations 1.69629 1.05668 1.28965 1.46111 1.24477 0.95033 0.99003 0.95074 0.86275 0.80986 0.81246 0.79268 1.19647 1.20484 1.17451 1.20831 0.76626 0.96871 1.52620 0.87303 1.83584 1.22846 1.25649 1.77658 1.18846 0.90893 0.85392 0.91413 1.21235 1.01738 0.91864 1.05061 1.20831 0.93171 0.97251 0.97122 1.17867 0.93407 0.92836 1.07438 1.20889 0.94727 0.96125 0.98095 1.20560 0.94115 0.97835 1.05564 1.20680 0.99215 0.92625 0.99853 1.20859 0.93504 0.97638 1.03034 1.17425 0.92773 0.91335 0.95829 1.18457 0.90713 0.93208 1.19969 1.22679 0.99715 0.96802 0.82902 1.98698 1.93472 1.94455 1.31230 0.90686 0.84082 0.86053 0.86497 0.87036 0.86927 0.86297 0.88556 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.89 13.96 55.48 0.77 -23.11 16 2 C 0.07 1.85 5.49 -17.52 -0.10 1.76 16 3 Si 0.90 20.70 28.62 -169.99 -4.86 15.83 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.25 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -10.42 9.94 30.88 0.31 -10.12 16 8 H 0.11 2.91 5.39 -52.48 -0.28 2.62 16 9 O -0.19 -4.79 7.58 0.19 0.00 -4.79 16 10 C 0.19 4.14 6.61 -39.10 -0.26 3.88 16 11 C -0.18 -3.63 9.07 -39.77 -0.36 -3.99 16 12 C -0.07 -1.12 9.75 -39.52 -0.39 -1.51 16 13 C -0.11 -1.97 5.74 -106.80 -0.61 -2.58 16 14 C -0.08 -1.15 9.76 -39.48 -0.39 -1.54 16 15 C -0.16 -2.15 9.95 -39.92 -0.40 -2.54 16 16 C -0.11 -1.43 9.95 -39.93 -0.40 -1.82 16 17 C -0.13 -2.03 9.28 -39.46 -0.37 -2.40 16 18 C 0.03 0.48 5.74 -106.84 -0.61 -0.13 16 19 C -0.22 -4.30 5.31 -103.98 -0.55 -4.85 16 20 C 0.04 0.72 6.09 36.00 0.22 0.94 16 21 Cl -0.20 -3.75 29.13 -51.86 -1.51 -5.26 16 22 H 0.28 7.20 8.31 -40.82 -0.34 6.87 16 23 H 0.14 2.89 5.58 -52.49 -0.29 2.60 16 24 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 25 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 26 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.12 1.65 6.36 -52.49 -0.33 1.31 16 29 H 0.10 1.77 7.51 -51.93 -0.39 1.38 16 30 H 0.09 1.30 6.41 -51.93 -0.33 0.97 16 LS Contribution 275.08 15.07 4.15 4.15 Total: -1.00 -27.78 275.08 -7.81 -35.59 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -2.46 Total: 2.49 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -3.90 Total: -24.90 kcal Atomic # 7 Polarization: -23.89 SS G_CDS: 0.77 Total: -23.11 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: 0.00 Total: -4.79 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.86 Total: 15.83 kcal Atomic # 17 Polarization: -3.75 SS G_CDS: -1.51 Total: -5.26 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.78 -7.81 -35.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035630821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.883 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds