Wall clock time and date at job start Mon Mar 30 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47242 * 270.00500 * 3 2 1 5 5 H 1.48510 * 109.46600 * 30.00220 * 3 2 1 6 6 H 1.48498 * 109.47246 * 149.99595 * 3 2 1 7 7 C 1.38649 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99707 * 359.97438 * 7 2 1 9 9 O 1.34814 * 120.00276 * 179.97438 * 7 2 1 10 10 C 1.35720 * 117.00223 * 185.06072 * 9 7 2 11 11 C 1.39991 * 119.65862 * 354.35568 * 10 9 7 12 12 C 1.35891 * 120.92925 * 180.02562 * 11 10 9 13 13 C 1.40628 * 119.90075 * 359.97409 * 12 11 10 14 14 C 1.40507 * 121.14141 * 180.02562 * 13 12 11 15 15 C 1.36139 * 119.69313 * 179.13669 * 14 13 12 16 16 C 1.39369 * 120.99509 * 0.89473 * 15 14 13 17 17 C 1.36093 * 120.96490 * 359.40585 * 16 15 14 18 18 C 1.40603 * 119.66261 * 0.02562 * 17 16 15 19 19 C 1.37754 * 119.66125 * 174.37578 * 10 9 7 20 20 C 1.50699 * 120.24610 * 359.95424 * 19 10 9 21 21 Cl 1.80308 * 109.46711 * 90.00592 * 20 19 10 22 22 H 0.96995 * 120.00196 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.53748 * 0.02562 * 11 10 9 24 24 H 1.07998 * 120.05161 * 180.02562 * 12 11 10 25 25 H 1.08004 * 120.15226 * 0.02562 * 14 13 12 26 26 H 1.07999 * 119.50064 * 180.30104 * 15 14 13 27 27 H 1.07998 * 119.51262 * 179.42675 * 16 15 14 28 28 H 1.07997 * 120.17053 * 180.02562 * 17 16 15 29 29 H 1.08999 * 109.47356 * 330.00586 * 20 19 10 30 30 H 1.08994 * 109.46972 * 209.99900 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6526 0.7002 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0005 9 8 3.3570 -1.2007 -0.0011 10 6 3.9732 -2.4052 -0.1082 11 6 3.2091 -3.5781 -0.0920 12 6 3.7992 -4.7976 -0.1970 13 6 5.1965 -4.8916 -0.3247 14 6 5.8337 -6.1390 -0.4356 15 6 7.1868 -6.1949 -0.5756 16 6 7.9553 -5.0324 -0.5924 17 6 7.3738 -3.8070 -0.4813 18 6 5.9776 -3.7089 -0.3469 19 6 5.3441 -2.4611 -0.2315 20 6 6.1570 -1.1923 -0.2485 21 17 6.6305 -0.7594 1.4366 22 1 -0.4850 0.8400 0.0004 23 1 2.1354 -3.5128 0.0054 24 1 3.1960 -5.6933 -0.1832 25 1 5.2515 -7.0485 -0.4243 26 1 7.6729 -7.1551 -0.6655 27 1 9.0278 -5.1051 -0.6954 28 1 7.9816 -2.9144 -0.4962 29 1 5.5627 -0.3856 -0.6775 30 1 7.0532 -1.3431 -0.8503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035630821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:29 Heat of formation + Delta-G solvation = -14.772205 kcal Electronic energy + Delta-G solvation = -16843.250877 eV Core-core repulsion = 14014.998470 eV Total energy + Delta-G solvation = -2828.252407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.050 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.54752 -39.76669 -36.95470 -36.37439 -34.60113 -34.18289 -30.88443 -30.44226 -27.88514 -26.85560 -24.20737 -23.40809 -21.85536 -20.17745 -19.00817 -18.06103 -17.47126 -16.65626 -16.11752 -15.81892 -15.39094 -15.20934 -14.88999 -14.72998 -14.37792 -14.33004 -13.94013 -13.81494 -13.53391 -13.15154 -12.85372 -12.19554 -12.08034 -11.94706 -11.74054 -11.59969 -11.25550 -11.07250 -10.94011 -10.54452 -9.23206 -8.58041 -8.53878 -6.23852 -0.38152 0.25872 0.98769 1.30553 1.32095 1.51139 1.66588 2.20658 2.25193 2.87380 2.99762 3.33268 3.64419 3.84061 4.03355 4.07352 4.24485 4.31251 4.38899 4.53454 4.56045 4.61549 4.86296 5.02317 5.17895 5.35800 5.38868 5.43727 5.59805 5.72092 5.78736 5.81960 6.04301 6.24069 6.80238 7.49689 8.56816 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.007251 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.761469 B = 3860.368866 C = 4833.149077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.019 3.981 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.400 4.400 8 H 0.088 0.912 9 O -0.224 6.224 10 C 0.156 3.844 11 C -0.213 4.213 12 C -0.051 4.051 13 C -0.125 4.125 14 C -0.088 4.088 15 C -0.146 4.146 16 C -0.095 4.095 17 C -0.143 4.143 18 C 0.002 3.998 19 C -0.210 4.210 20 C 0.040 3.960 21 Cl -0.207 7.207 22 H 0.285 0.715 23 H 0.122 0.878 24 H 0.154 0.846 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.133 0.867 29 H 0.084 0.916 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.900 -9.194 -2.274 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.180 4.180 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.476 4.476 8 H 0.105 0.895 9 O -0.130 6.130 10 C 0.105 3.895 11 C -0.232 4.232 12 C -0.068 4.068 13 C -0.125 4.125 14 C -0.106 4.106 15 C -0.164 4.164 16 C -0.113 4.113 17 C -0.161 4.161 18 C 0.002 3.998 19 C -0.212 4.212 20 C -0.022 4.022 21 Cl -0.181 7.181 22 H 0.095 0.905 23 H 0.140 0.860 24 H 0.172 0.828 25 H 0.165 0.835 26 H 0.168 0.832 27 H 0.167 0.833 28 H 0.151 0.849 29 H 0.102 0.898 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.815 -8.795 -2.129 17.360 hybrid contribution -0.742 0.875 0.218 1.168 sum 14.073 -7.920 -1.911 16.261 Atomic orbital electron populations 1.69706 1.06804 1.29649 1.49436 1.25156 0.95738 1.01795 0.95355 0.85429 0.79351 0.77995 0.79493 1.18771 1.19483 1.18266 1.20751 0.77909 0.96298 1.52680 0.89458 1.83542 1.21356 1.26924 1.81187 1.19340 0.92121 0.85295 0.92788 1.21196 1.00980 0.92950 1.08068 1.21180 0.93988 0.97098 0.94580 1.18244 0.93266 0.94171 1.06836 1.21247 0.95781 0.95812 0.97712 1.21113 0.93666 0.99528 1.02082 1.21191 1.01281 0.91776 0.97057 1.21077 0.92245 0.99441 1.03298 1.17745 0.94399 0.90845 0.96860 1.18839 0.89924 0.94903 1.17530 1.22810 1.00877 0.95643 0.82854 1.98694 1.93350 1.94443 1.31622 0.90496 0.86012 0.82842 0.83509 0.83175 0.83262 0.84941 0.89785 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.43 13.96 21.61 0.30 -53.12 16 2 C 0.02 1.08 5.49 84.83 0.47 1.55 16 3 Si 0.96 44.53 28.62 68.60 1.96 46.49 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.40 -22.68 9.94 67.92 0.68 -22.00 16 8 H 0.09 5.13 5.39 -2.91 -0.02 5.11 16 9 O -0.22 -11.65 7.58 -22.24 -0.17 -11.81 16 10 C 0.16 7.07 6.61 22.58 0.15 7.22 16 11 C -0.21 -8.97 9.07 22.15 0.20 -8.77 16 12 C -0.05 -1.69 9.75 22.31 0.22 -1.47 16 13 C -0.12 -3.94 5.74 -21.27 -0.12 -4.06 16 14 C -0.09 -2.07 9.76 22.33 0.22 -1.85 16 15 C -0.15 -2.92 9.95 22.05 0.22 -2.70 16 16 C -0.10 -2.00 9.95 22.04 0.22 -1.78 16 17 C -0.14 -3.79 9.28 22.35 0.21 -3.58 16 18 C 0.00 0.06 5.74 -21.30 -0.12 -0.06 16 19 C -0.21 -8.09 5.31 -19.45 -0.10 -8.20 16 20 C 0.04 1.37 6.09 71.24 0.43 1.80 16 21 Cl -0.21 -7.38 29.13 -2.72 -0.08 -7.46 16 22 H 0.29 15.34 8.31 -92.71 -0.77 14.57 16 23 H 0.12 5.49 5.58 -2.91 -0.02 5.47 16 24 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 25 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 26 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 27 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.13 3.10 6.36 -2.91 -0.02 3.08 16 29 H 0.08 3.10 7.51 -2.39 -0.02 3.09 16 30 H 0.12 3.31 6.41 -2.39 -0.02 3.30 16 Total: -1.00 -64.17 275.08 5.85 -58.32 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.17 Total: 11.49 kcal Atomic # 6 Polarization: -46.56 SS G_CDS: 2.66 Total: -43.90 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.30 Total: -53.12 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.17 Total: -11.81 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.96 Total: 46.49 kcal Atomic # 17 Polarization: -7.38 SS G_CDS: -0.08 Total: -7.46 kcal Total: -64.17 5.85 -58.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035630821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.549 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds