Wall clock time and date at job start Mon Mar 30 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31602 * 1 3 3 Si 1.86798 * 120.00105 * 2 1 4 4 H 1.48503 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47203 * 300.00356 * 3 2 1 6 6 H 1.48499 * 109.46781 * 59.99988 * 3 2 1 7 7 C 1.38587 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99767 * 179.97438 * 7 2 1 9 9 O 1.34791 * 120.00392 * 0.02562 * 7 2 1 10 10 C 1.35759 * 117.00124 * 185.07111 * 9 7 2 11 11 C 1.38839 * 119.97540 * 354.39911 * 10 9 7 12 12 C 1.37915 * 120.12521 * 180.27061 * 11 10 9 13 13 C 1.39494 * 120.09254 * 0.02562 * 12 11 10 14 14 C 1.48288 * 120.02720 * 180.02562 * 13 12 11 15 15 C 1.34896 * 122.96881 * 359.71064 * 14 13 12 16 16 S 1.76178 * 107.87269 * 179.88259 * 15 14 13 17 17 C 1.70918 * 90.44083 * 0.31501 * 16 15 14 18 18 N 1.28805 * 110.49920 * 359.81586 * 17 16 15 19 19 C 1.39364 * 119.95059 * 359.97438 * 13 12 11 20 20 C 1.38493 * 119.86730 * 0.02562 * 19 13 12 21 21 N 1.39799 * 120.04105 * 180.02562 * 20 19 13 22 22 H 0.97003 * 120.00027 * 359.97438 * 1 2 3 23 23 H 1.07994 * 119.93551 * 0.26947 * 11 10 9 24 24 H 1.08007 * 119.95468 * 180.02562 * 12 11 10 25 25 H 1.08001 * 126.06376 * 359.97438 * 15 14 13 26 26 H 1.07997 * 124.75450 * 179.82965 * 17 16 15 27 27 H 1.07995 * 120.06643 * 179.97438 * 19 13 12 28 28 H 0.97000 * 120.00168 * 179.97438 * 21 20 19 29 29 H 0.97001 * 119.99508 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8913 2.3964 -1.2124 6 1 1.8913 2.3963 1.2125 7 6 2.0089 -1.2002 -0.0005 8 1 3.0890 -1.2003 -0.0010 9 8 1.3349 -2.3676 -0.0016 10 6 2.0702 -3.5039 0.1049 11 6 3.4569 -3.4367 0.0912 12 6 4.2068 -4.5896 0.1935 13 6 3.5742 -5.8273 0.3106 14 6 4.3819 -7.0660 0.4211 15 6 5.7308 -7.0662 0.4091 16 16 6.2726 -8.7353 0.5663 17 6 4.6503 -9.2704 0.6232 18 7 3.8424 -8.2712 0.5347 19 6 2.1824 -5.8988 0.3247 20 6 1.4312 -4.7399 0.2218 21 7 0.0349 -4.8074 0.2361 22 1 -0.4850 0.8401 0.0004 23 1 3.9492 -2.4798 0.0002 24 1 5.2854 -4.5341 0.1830 25 1 6.3660 -6.1973 0.3206 26 1 4.3454 -10.3019 0.7200 27 1 1.6908 -6.8561 0.4148 28 1 -0.4907 -3.9953 0.1644 29 1 -0.4082 -5.6664 0.3177 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036238233.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:09 Heat of formation + Delta-G solvation = 45.816585 kcal Electronic energy + Delta-G solvation = -16315.563550 eV Core-core repulsion = 13524.274928 eV Total energy + Delta-G solvation = -2791.288622 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80146 -38.81606 -36.36067 -33.79269 -32.27324 -30.70255 -28.93352 -27.23529 -25.39232 -25.04523 -21.98816 -21.39562 -19.27823 -18.34317 -17.84335 -16.75596 -16.18686 -15.45341 -15.07467 -14.53179 -14.36645 -13.93575 -13.69867 -13.63865 -13.08210 -12.94663 -12.58571 -11.74608 -11.65691 -11.64877 -11.01246 -10.94589 -10.77110 -10.44269 -10.11443 -9.57100 -9.41590 -9.35967 -9.02145 -8.63491 -7.45303 -6.49040 -6.43234 -4.00617 0.76466 1.51418 1.84394 2.03146 2.39060 3.08904 3.12706 3.18094 3.38889 3.94009 4.32519 4.69463 4.71209 5.07132 5.18751 5.25224 5.40446 5.57730 5.83677 5.89244 6.21364 6.32426 6.65924 6.77018 6.87260 7.14921 7.27322 7.38044 7.66537 7.92855 7.95232 8.30852 8.63371 8.98332 9.67891 10.69749 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.037712 B = 0.004418 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.295484 B = 6336.534031 C = 7065.309484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.037 3.963 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.383 4.383 8 H 0.093 0.907 9 O -0.178 6.178 10 C 0.108 3.892 11 C -0.208 4.208 12 C -0.094 4.094 13 C -0.086 4.086 14 C 0.142 3.858 15 C -0.268 4.268 16 S 0.084 5.916 17 C 0.023 3.977 18 N -0.462 5.462 19 C -0.131 4.131 20 C 0.154 3.846 21 N -0.880 5.880 22 H 0.269 0.731 23 H 0.131 0.869 24 H 0.107 0.893 25 H 0.176 0.824 26 H 0.196 0.804 27 H 0.121 0.879 28 H 0.405 0.595 29 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.882 -12.919 0.937 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.167 4.167 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.459 4.459 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.052 3.948 11 C -0.229 4.229 12 C -0.116 4.116 13 C -0.090 4.090 14 C 0.013 3.987 15 C -0.406 4.406 16 S 0.335 5.665 17 C -0.276 4.276 18 N -0.176 5.176 19 C -0.156 4.156 20 C 0.051 3.949 21 N -0.422 5.422 22 H 0.079 0.921 23 H 0.149 0.851 24 H 0.125 0.875 25 H 0.194 0.806 26 H 0.212 0.788 27 H 0.139 0.861 28 H 0.234 0.766 29 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 8.899 -13.309 0.971 16.039 hybrid contribution -0.291 1.452 -0.047 1.481 sum 8.608 -11.857 0.924 14.681 Atomic orbital electron populations 1.70047 1.05886 1.27545 1.46398 1.25268 0.95889 0.98795 0.96748 0.85637 0.79170 0.80378 0.78206 1.19078 1.20206 1.20206 1.21360 0.91899 0.80692 1.51955 0.88967 1.83857 1.34182 1.11220 1.78972 1.19070 0.90476 0.86939 0.98327 1.20787 0.92837 0.98713 1.10556 1.20504 0.98181 0.91005 1.01872 1.17231 0.91559 0.88718 1.11516 1.19008 0.89672 0.91150 0.98875 1.26864 0.98396 0.99583 1.15747 1.83779 1.12481 1.01306 1.68931 1.28256 0.92141 1.02783 1.04455 1.66202 1.38011 0.98585 1.14784 1.20110 0.92419 0.95669 1.07435 1.16976 0.84434 0.90957 1.02521 1.42141 1.02947 1.10818 1.86291 0.92120 0.85102 0.87458 0.80645 0.78770 0.86112 0.76615 0.78598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.58 13.67 55.48 0.76 -23.82 15 2 C 0.04 0.99 5.49 -17.52 -0.10 0.89 15 3 Si 0.94 20.22 29.55 -169.99 -5.02 15.19 15 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 7 C -0.38 -10.41 9.48 30.86 0.29 -10.12 15 8 H 0.09 2.33 5.19 -52.48 -0.27 2.06 15 9 O -0.18 -4.88 8.99 0.13 0.00 -4.88 15 10 C 0.11 2.57 6.67 -38.84 -0.26 2.31 15 11 C -0.21 -4.50 9.15 -39.48 -0.36 -4.87 15 12 C -0.09 -1.78 9.47 -39.23 -0.37 -2.15 15 13 C -0.09 -1.63 5.88 -104.88 -0.62 -2.25 15 14 C 0.14 2.36 6.65 -84.62 -0.56 1.80 15 15 C -0.27 -3.70 10.63 29.55 0.31 -3.38 15 16 S 0.08 0.90 23.21 -107.50 -2.50 -1.59 15 17 C 0.02 0.27 12.20 51.49 0.63 0.90 15 18 N -0.46 -7.28 9.91 -12.27 -0.12 -7.40 15 19 C -0.13 -2.57 9.47 -39.07 -0.37 -2.94 15 20 C 0.15 3.27 6.77 -83.61 -0.57 2.71 15 21 N -0.88 -16.54 9.08 32.50 0.30 -16.25 15 22 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.13 2.79 5.62 -52.49 -0.29 2.49 15 24 H 0.11 1.69 6.65 -52.48 -0.35 1.34 15 25 H 0.18 2.12 6.89 -52.49 -0.36 1.76 15 26 H 0.20 1.52 8.06 -52.49 -0.42 1.10 15 27 H 0.12 2.21 7.69 -52.49 -0.40 1.80 15 28 H 0.40 8.13 8.19 -40.82 -0.33 7.80 15 29 H 0.39 5.94 8.84 -40.82 -0.36 5.58 15 LS Contribution 273.02 15.07 4.11 4.11 Total: -1.00 -30.68 273.02 -6.37 -37.06 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -1.93 Total: 14.68 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.97 Total: -17.10 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.93 Total: -47.47 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.00 Total: -4.88 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.68 -6.37 -37.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036238233.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.872 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds