Wall clock time and date at job start Mon Mar 30 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31602 * 1 3 3 Si 1.86798 * 120.00105 * 2 1 4 4 H 1.48503 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47203 * 300.00356 * 3 2 1 6 6 H 1.48499 * 109.46781 * 59.99988 * 3 2 1 7 7 C 1.38587 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99767 * 179.97438 * 7 2 1 9 9 O 1.34791 * 120.00392 * 0.02562 * 7 2 1 10 10 C 1.35759 * 117.00124 * 185.07111 * 9 7 2 11 11 C 1.38839 * 119.97540 * 354.39911 * 10 9 7 12 12 C 1.37915 * 120.12521 * 180.27061 * 11 10 9 13 13 C 1.39494 * 120.09254 * 0.02562 * 12 11 10 14 14 C 1.48288 * 120.02720 * 180.02562 * 13 12 11 15 15 C 1.34896 * 122.96881 * 359.71064 * 14 13 12 16 16 S 1.76178 * 107.87269 * 179.88259 * 15 14 13 17 17 C 1.70918 * 90.44083 * 0.31501 * 16 15 14 18 18 N 1.28805 * 110.49920 * 359.81586 * 17 16 15 19 19 C 1.39364 * 119.95059 * 359.97438 * 13 12 11 20 20 C 1.38493 * 119.86730 * 0.02562 * 19 13 12 21 21 N 1.39799 * 120.04105 * 180.02562 * 20 19 13 22 22 H 0.97003 * 120.00027 * 359.97438 * 1 2 3 23 23 H 1.07994 * 119.93551 * 0.26947 * 11 10 9 24 24 H 1.08007 * 119.95468 * 180.02562 * 12 11 10 25 25 H 1.08001 * 126.06376 * 359.97438 * 15 14 13 26 26 H 1.07997 * 124.75450 * 179.82965 * 17 16 15 27 27 H 1.07995 * 120.06643 * 179.97438 * 19 13 12 28 28 H 0.97000 * 120.00168 * 179.97438 * 21 20 19 29 29 H 0.97001 * 119.99508 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8913 2.3964 -1.2124 6 1 1.8913 2.3963 1.2125 7 6 2.0089 -1.2002 -0.0005 8 1 3.0890 -1.2003 -0.0010 9 8 1.3349 -2.3676 -0.0016 10 6 2.0702 -3.5039 0.1049 11 6 3.4569 -3.4367 0.0912 12 6 4.2068 -4.5896 0.1935 13 6 3.5742 -5.8273 0.3106 14 6 4.3819 -7.0660 0.4211 15 6 5.7308 -7.0662 0.4091 16 16 6.2726 -8.7353 0.5663 17 6 4.6503 -9.2704 0.6232 18 7 3.8424 -8.2712 0.5347 19 6 2.1824 -5.8988 0.3247 20 6 1.4312 -4.7399 0.2218 21 7 0.0349 -4.8074 0.2361 22 1 -0.4850 0.8401 0.0004 23 1 3.9492 -2.4798 0.0002 24 1 5.2854 -4.5341 0.1830 25 1 6.3660 -6.1973 0.3206 26 1 4.3454 -10.3019 0.7200 27 1 1.6908 -6.8561 0.4148 28 1 -0.4907 -3.9953 0.1644 29 1 -0.4082 -5.6664 0.3177 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036238233.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:09 Heat of formation + Delta-G solvation = 24.200372 kcal Electronic energy + Delta-G solvation = -16316.500900 eV Core-core repulsion = 13524.274928 eV Total energy + Delta-G solvation = -2792.225972 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15048 -40.28776 -38.03797 -35.33654 -34.19112 -32.04007 -30.41183 -28.81197 -27.21363 -26.17898 -23.60402 -22.87356 -20.54894 -19.86825 -19.35702 -18.37232 -17.69148 -16.85164 -16.41950 -16.20052 -15.67030 -15.58896 -15.31972 -14.97833 -14.65722 -14.20509 -14.03953 -13.49899 -13.32080 -13.03753 -12.66169 -12.43076 -12.21584 -12.07671 -11.59111 -11.25706 -10.80829 -10.54960 -10.36527 -10.02172 -8.95596 -8.42898 -8.07693 -6.03274 -0.30215 0.56704 0.60069 0.78300 0.84025 1.37930 1.44182 1.55160 2.08106 2.19922 2.95118 3.15581 3.27834 3.31794 3.48742 4.09009 4.21707 4.31641 4.47877 4.57001 4.67574 4.94016 5.02316 5.19257 5.21579 5.44599 5.63184 5.79761 6.02075 6.09527 6.67725 6.86832 7.03223 7.15316 7.84208 8.80205 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.037712 B = 0.004418 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.295484 B = 6336.534031 C = 7065.309484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.024 4.024 3 Si 1.015 2.985 4 H -0.252 1.252 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.404 4.404 8 H 0.101 0.899 9 O -0.223 6.223 10 C 0.059 3.941 11 C -0.205 4.205 12 C -0.103 4.103 13 C -0.066 4.066 14 C 0.102 3.898 15 C -0.267 4.267 16 S 0.170 5.830 17 C 0.019 3.981 18 N -0.501 5.501 19 C -0.136 4.136 20 C 0.147 3.853 21 N -0.873 5.873 22 H 0.270 0.730 23 H 0.128 0.872 24 H 0.143 0.857 25 H 0.192 0.808 26 H 0.232 0.768 27 H 0.134 0.866 28 H 0.398 0.602 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.092 -15.358 1.198 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.221 4.221 3 Si 0.835 3.165 4 H -0.175 1.175 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.480 4.480 8 H 0.118 0.882 9 O -0.130 6.130 10 C 0.007 3.993 11 C -0.225 4.225 12 C -0.124 4.124 13 C -0.070 4.070 14 C -0.027 4.027 15 C -0.406 4.406 16 S 0.423 5.577 17 C -0.279 4.279 18 N -0.215 5.215 19 C -0.161 4.161 20 C 0.044 3.956 21 N -0.416 5.416 22 H 0.079 0.921 23 H 0.145 0.855 24 H 0.160 0.840 25 H 0.209 0.791 26 H 0.248 0.752 27 H 0.152 0.848 28 H 0.225 0.775 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 12.146 -15.844 1.237 20.002 hybrid contribution -1.006 1.665 -0.091 1.948 sum 11.139 -14.179 1.146 18.067 Atomic orbital electron populations 1.70186 1.07742 1.28436 1.49364 1.26460 0.96867 1.02412 0.96332 0.84565 0.78361 0.75256 0.78301 1.17498 1.19631 1.19687 1.21804 0.92535 0.81441 1.52223 0.88207 1.83829 1.35188 1.11915 1.82087 1.19528 0.91667 0.87000 1.01150 1.20960 0.92340 0.99733 1.09497 1.20771 0.99791 0.89964 1.01836 1.17655 0.91667 0.90267 1.07374 1.18824 0.90516 0.90877 1.02519 1.27286 0.97911 1.02747 1.12619 1.83592 1.10261 0.97564 1.66304 1.28910 0.92904 1.03621 1.02457 1.66158 1.39688 0.98888 1.16788 1.20334 0.93065 0.95432 1.07242 1.17238 0.85421 0.90822 1.02118 1.42097 1.02305 1.11367 1.85785 0.92090 0.85453 0.83956 0.79095 0.75191 0.84829 0.77470 0.76724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.16 13.67 21.60 0.30 -54.86 15 2 C -0.02 -1.31 5.49 84.81 0.47 -0.85 15 3 Si 1.01 42.59 29.55 68.60 2.03 44.62 15 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 15 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 7 C -0.40 -23.05 9.48 67.90 0.64 -22.41 15 8 H 0.10 5.26 5.19 -2.91 -0.02 5.24 15 9 O -0.22 -12.97 8.99 -22.45 -0.20 -13.17 15 10 C 0.06 2.96 6.67 22.75 0.15 3.11 15 11 C -0.21 -9.02 9.15 22.34 0.20 -8.82 15 12 C -0.10 -3.74 9.47 22.50 0.21 -3.53 15 13 C -0.07 -2.40 5.88 -20.03 -0.12 -2.52 15 14 C 0.10 3.12 6.65 40.95 0.27 3.39 15 15 C -0.27 -6.29 10.63 67.05 0.71 -5.58 15 16 S 0.17 2.79 23.21 -56.49 -1.31 1.48 15 17 C 0.02 0.37 12.20 130.69 1.59 1.97 15 18 N -0.50 -14.30 9.91 -192.75 -1.91 -16.21 15 19 C -0.14 -5.29 9.47 22.60 0.21 -5.07 15 20 C 0.15 6.45 6.77 38.27 0.26 6.71 15 21 N -0.87 -34.08 9.08 -51.10 -0.46 -34.55 15 22 H 0.27 14.93 8.31 -92.71 -0.77 14.16 15 23 H 0.13 5.56 5.62 -2.91 -0.02 5.55 15 24 H 0.14 4.08 6.65 -2.91 -0.02 4.06 15 25 H 0.19 3.76 6.89 -2.91 -0.02 3.74 15 26 H 0.23 2.43 8.06 -2.91 -0.02 2.41 15 27 H 0.13 4.78 7.69 -2.91 -0.02 4.76 15 28 H 0.40 16.99 8.19 -92.71 -0.76 16.23 15 29 H 0.40 12.58 8.84 -92.71 -0.82 11.76 15 Total: -1.00 -70.71 273.02 2.70 -68.01 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -0.35 Total: 38.27 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 4.61 Total: -33.58 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -2.08 Total: -105.62 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.20 Total: -13.17 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.31 Total: 1.48 kcal Total: -70.71 2.70 -68.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036238233.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.208 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds