Wall clock time and date at job start Mon Mar 30 2020 06:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34656 * 125.77343 * 2 1 4 4 C 1.46372 * 107.14686 * 179.97438 * 3 2 1 5 5 C 1.41258 * 126.48914 * 179.97438 * 4 3 2 6 6 H 1.08006 * 120.00249 * 353.73001 * 5 4 3 7 7 C 1.39883 * 119.99962 * 173.73236 * 5 4 3 8 8 N 1.30886 * 119.99738 * 168.76011 * 7 5 4 9 9 Si 1.86795 * 120.00139 * 348.75862 * 7 5 4 10 10 H 1.48500 * 109.46918 * 84.96448 * 9 7 5 11 11 H 1.48501 * 109.47087 * 204.96580 * 9 7 5 12 12 H 1.48500 * 109.47193 * 324.96723 * 9 7 5 13 13 N 1.33017 * 107.02275 * 359.97438 * 4 3 2 14 14 N 1.36204 * 125.77128 * 179.69532 * 2 1 3 15 15 C 1.39832 * 125.42650 * 0.03483 * 14 2 1 16 16 C 1.38955 * 120.08176 * 307.38746 * 15 14 2 17 17 C 1.38074 * 119.93079 * 179.67655 * 16 15 14 18 18 C 1.38338 * 120.10198 * 0.62725 * 17 16 15 19 19 C 1.38274 * 120.17083 * 359.67090 * 18 17 16 20 20 C 1.38221 * 120.06063 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 120.04965 * 179.97438 * 20 19 18 22 22 H 1.08993 * 109.47332 * 95.76867 * 1 2 3 23 23 H 1.09001 * 109.46519 * 335.76980 * 1 2 3 24 24 H 1.08994 * 109.47178 * 215.77334 * 1 2 3 25 25 H 1.07997 * 126.42650 * 359.96808 * 3 2 1 26 26 H 0.96998 * 119.99965 * 179.97438 * 8 7 5 27 27 H 1.08000 * 120.03720 * 359.97438 * 16 15 14 28 28 H 1.07995 * 119.94925 * 180.30237 * 17 16 15 29 29 H 1.07997 * 119.91462 * 179.69996 * 18 17 16 30 30 H 1.07995 * 119.96979 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2942 1.0925 0.0000 4 6 3.6813 0.6250 0.0006 5 6 4.8400 1.4329 0.0003 6 1 4.7513 2.5044 -0.1026 7 6 6.1024 0.8452 0.1333 8 7 7.1807 1.5542 -0.0854 9 14 6.2494 -0.9514 0.6229 10 1 6.1357 -1.8051 -0.5869 11 1 7.5662 -1.1821 1.2696 12 1 5.1632 -1.2954 1.5752 13 7 3.6441 -0.7046 0.0015 14 7 2.3032 -1.1051 0.0059 15 6 1.8526 -2.4288 0.0122 16 6 0.9365 -2.8480 0.9692 17 6 0.4885 -4.1541 0.9685 18 6 0.9600 -5.0488 0.0247 19 6 1.8764 -4.6378 -0.9258 20 6 2.3248 -3.3303 -0.9353 21 17 3.4757 -2.8147 -2.1282 22 1 -0.3633 -0.1033 -1.0224 23 1 -0.3632 0.9372 0.4218 24 1 -0.3633 -0.8337 0.6007 25 1 1.9641 2.1208 -0.0005 26 1 8.0561 1.1468 0.0071 27 1 0.5716 -2.1519 1.7099 28 1 -0.2272 -4.4790 1.7091 29 1 0.6112 -6.0709 0.0299 30 1 2.2420 -5.3389 -1.6613 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041258307.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:02 Heat of formation + Delta-G solvation = 82.636044 kcal Electronic energy + Delta-G solvation = -17089.907217 eV Core-core repulsion = 14298.171500 eV Total energy + Delta-G solvation = -2791.735717 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.06241 -38.41118 -35.93310 -33.79035 -32.29237 -31.42409 -30.56299 -28.72088 -26.23935 -25.54805 -22.68191 -22.08599 -19.69849 -19.14382 -17.23183 -16.28512 -16.17067 -15.44970 -14.76521 -14.24652 -13.83202 -13.71703 -13.22830 -12.96708 -12.62270 -12.39170 -12.29503 -12.18835 -11.59004 -11.26815 -11.16809 -10.98793 -10.64647 -10.47852 -10.37072 -10.24189 -9.28741 -8.93786 -8.59664 -8.42945 -7.84125 -7.30479 -6.69961 -4.47617 1.21379 1.28924 2.57951 2.96765 3.23467 3.46973 3.67462 3.76630 3.79685 4.07011 4.48681 4.87151 4.96367 5.21514 5.32685 5.40408 5.44018 5.55160 5.64602 5.81384 5.87008 6.12323 6.22026 6.23885 6.42653 6.58361 6.73221 6.74870 7.00834 7.30109 7.61922 8.25813 8.43474 8.75727 8.81921 9.43894 10.29899 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.008862 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.387179 B = 3158.664113 C = 3815.106203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.066 3.934 3 C -0.269 4.269 4 C 0.209 3.791 5 C -0.419 4.419 6 H 0.095 0.905 7 C 0.094 3.906 8 N -0.821 5.821 9 Si 0.940 3.060 10 H -0.263 1.263 11 H -0.314 1.314 12 H -0.246 1.246 13 N -0.400 5.400 14 N -0.370 5.370 15 C 0.204 3.796 16 C -0.133 4.133 17 C -0.101 4.101 18 C -0.132 4.132 19 C -0.100 4.100 20 C -0.047 4.047 21 Cl -0.043 7.043 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.132 0.868 26 H 0.283 0.717 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.656 -10.447 0.304 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.298 4.298 4 C 0.058 3.942 5 C -0.458 4.458 6 H 0.113 0.887 7 C -0.126 4.126 8 N -0.449 5.449 9 Si 0.770 3.230 10 H -0.189 1.189 11 H -0.244 1.244 12 H -0.171 1.171 13 N -0.229 5.229 14 N -0.146 5.146 15 C 0.108 3.892 16 C -0.154 4.154 17 C -0.120 4.120 18 C -0.151 4.151 19 C -0.119 4.119 20 C -0.077 4.077 21 Cl -0.014 7.014 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.150 0.850 26 H 0.093 0.907 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.760 -11.389 0.160 16.372 hybrid contribution -0.122 0.111 0.061 0.176 sum -11.882 -11.278 0.221 16.384 Atomic orbital electron populations 1.20428 0.89343 1.02762 1.02171 1.20701 0.92870 0.87553 1.03901 1.22262 0.92877 0.96798 1.17904 1.20813 0.92652 0.89829 0.90943 1.18542 0.87005 0.95252 1.45050 0.88735 1.26004 0.94884 1.01187 0.90563 1.69664 0.99305 1.39312 1.36603 0.85588 0.74637 0.81321 0.81443 1.18872 1.24395 1.17094 1.77594 0.90269 1.11941 1.43143 1.45310 1.05129 1.00503 1.63694 1.17170 0.95292 0.83414 0.93353 1.21169 0.99968 0.96726 0.97560 1.20990 0.99684 0.92586 0.98759 1.20998 0.98419 0.99851 0.95882 1.20949 0.97737 0.93480 0.99753 1.21163 0.97681 0.94853 0.93984 1.98402 1.57656 1.91012 1.54344 0.91499 0.90520 0.91857 0.85028 0.90724 0.85018 0.85340 0.85343 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 9.98 36.01 0.36 -0.94 16 2 C 0.07 1.36 6.76 -81.92 -0.55 0.81 16 3 C -0.27 -6.16 10.91 -37.58 -0.41 -6.57 16 4 C 0.21 5.61 6.63 -82.94 -0.55 5.06 16 5 C -0.42 -11.96 9.97 -37.82 -0.38 -12.33 16 6 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 7 C 0.09 2.66 5.52 -17.34 -0.10 2.57 16 8 N -0.82 -23.31 13.93 55.54 0.77 -22.54 16 9 Si 0.94 24.62 25.83 -169.99 -4.39 20.23 16 10 H -0.26 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.31 -7.92 7.11 56.52 0.40 -7.51 16 12 H -0.25 -6.72 6.50 56.52 0.37 -6.35 16 13 N -0.40 -10.57 6.66 33.25 0.22 -10.35 16 14 N -0.37 -8.35 3.31 -6.92 -0.02 -8.37 16 15 C 0.20 3.94 5.94 -83.64 -0.50 3.44 16 16 C -0.13 -2.04 8.42 -39.38 -0.33 -2.37 16 17 C -0.10 -1.22 10.04 -39.60 -0.40 -1.62 16 18 C -0.13 -1.56 10.04 -39.53 -0.40 -1.96 16 19 C -0.10 -1.42 9.82 -39.57 -0.39 -1.81 16 20 C -0.05 -0.87 6.34 -39.29 -0.25 -1.12 16 21 Cl -0.04 -0.89 27.43 -51.86 -1.42 -2.31 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 0.83 5.69 -51.93 -0.30 0.53 16 25 H 0.13 2.70 8.06 -52.49 -0.42 2.27 16 26 H 0.28 7.40 8.30 -40.82 -0.34 7.06 16 27 H 0.13 1.87 7.08 -52.49 -0.37 1.50 16 28 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 275.89 15.07 4.16 4.16 Total: -1.00 -31.93 275.89 -7.37 -39.30 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -2.80 Total: -3.27 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -3.89 Total: -16.85 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.97 Total: -41.26 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.39 Total: 20.23 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.42 Total: -2.31 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.93 -7.37 -39.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041258307.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.937 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds