Wall clock time and date at job start Mon Mar 30 2020 06:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34656 * 125.77343 * 2 1 4 4 C 1.46372 * 107.14686 * 179.97438 * 3 2 1 5 5 C 1.41258 * 126.48914 * 179.97438 * 4 3 2 6 6 H 1.08006 * 120.00249 * 353.73001 * 5 4 3 7 7 C 1.39883 * 119.99962 * 173.73236 * 5 4 3 8 8 N 1.30886 * 119.99738 * 168.76011 * 7 5 4 9 9 Si 1.86795 * 120.00139 * 348.75862 * 7 5 4 10 10 H 1.48500 * 109.46918 * 84.96448 * 9 7 5 11 11 H 1.48501 * 109.47087 * 204.96580 * 9 7 5 12 12 H 1.48500 * 109.47193 * 324.96723 * 9 7 5 13 13 N 1.33017 * 107.02275 * 359.97438 * 4 3 2 14 14 N 1.36204 * 125.77128 * 179.69532 * 2 1 3 15 15 C 1.39832 * 125.42650 * 0.03483 * 14 2 1 16 16 C 1.38955 * 120.08176 * 307.38746 * 15 14 2 17 17 C 1.38074 * 119.93079 * 179.67655 * 16 15 14 18 18 C 1.38338 * 120.10198 * 0.62725 * 17 16 15 19 19 C 1.38274 * 120.17083 * 359.67090 * 18 17 16 20 20 C 1.38221 * 120.06063 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 120.04965 * 179.97438 * 20 19 18 22 22 H 1.08993 * 109.47332 * 95.76867 * 1 2 3 23 23 H 1.09001 * 109.46519 * 335.76980 * 1 2 3 24 24 H 1.08994 * 109.47178 * 215.77334 * 1 2 3 25 25 H 1.07997 * 126.42650 * 359.96808 * 3 2 1 26 26 H 0.96998 * 119.99965 * 179.97438 * 8 7 5 27 27 H 1.08000 * 120.03720 * 359.97438 * 16 15 14 28 28 H 1.07995 * 119.94925 * 180.30237 * 17 16 15 29 29 H 1.07997 * 119.91462 * 179.69996 * 18 17 16 30 30 H 1.07995 * 119.96979 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2942 1.0925 0.0000 4 6 3.6813 0.6250 0.0006 5 6 4.8400 1.4329 0.0003 6 1 4.7513 2.5044 -0.1026 7 6 6.1024 0.8452 0.1333 8 7 7.1807 1.5542 -0.0854 9 14 6.2494 -0.9514 0.6229 10 1 6.1357 -1.8051 -0.5869 11 1 7.5662 -1.1821 1.2696 12 1 5.1632 -1.2954 1.5752 13 7 3.6441 -0.7046 0.0015 14 7 2.3032 -1.1051 0.0059 15 6 1.8526 -2.4288 0.0122 16 6 0.9365 -2.8480 0.9692 17 6 0.4885 -4.1541 0.9685 18 6 0.9600 -5.0488 0.0247 19 6 1.8764 -4.6378 -0.9258 20 6 2.3248 -3.3303 -0.9353 21 17 3.4757 -2.8147 -2.1282 22 1 -0.3633 -0.1033 -1.0224 23 1 -0.3632 0.9372 0.4218 24 1 -0.3633 -0.8337 0.6007 25 1 1.9641 2.1208 -0.0005 26 1 8.0561 1.1468 0.0071 27 1 0.5716 -2.1519 1.7099 28 1 -0.2272 -4.4790 1.7091 29 1 0.6112 -6.0709 0.0299 30 1 2.2420 -5.3389 -1.6613 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041258307.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:01 Heat of formation + Delta-G solvation = 63.334648 kcal Electronic energy + Delta-G solvation = -17090.744188 eV Core-core repulsion = 14298.171500 eV Total energy + Delta-G solvation = -2792.572689 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.65049 -39.77088 -37.35791 -35.73425 -33.97297 -32.89844 -31.75407 -30.32700 -27.85704 -27.28828 -23.87476 -23.45273 -21.53906 -20.78297 -18.83998 -18.05991 -17.49387 -16.77526 -16.65178 -15.52301 -15.22258 -15.00678 -14.90060 -14.59113 -14.18179 -14.11556 -13.66962 -13.50740 -13.02414 -12.85403 -12.71435 -12.54793 -12.40838 -12.28871 -12.22331 -11.76485 -11.30333 -10.52890 -10.35733 -9.85206 -9.53241 -8.99740 -8.83296 -6.58440 -0.02186 0.15934 1.18743 1.23242 1.25581 1.47583 1.58031 2.01809 2.05487 2.46172 2.60113 3.30849 3.71582 3.90483 4.02726 4.24684 4.30815 4.33489 4.51141 4.64043 4.72578 4.78907 4.89972 5.06522 5.18563 5.20440 5.28837 5.36651 5.49458 5.64441 5.79410 6.19128 6.63270 6.75262 6.83591 7.48744 8.22309 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.008862 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.387179 B = 3158.664113 C = 3815.106203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.310 4.310 4 C 0.186 3.814 5 C -0.450 4.450 6 H 0.073 0.927 7 C 0.063 3.937 8 N -0.854 5.854 9 Si 0.995 3.005 10 H -0.277 1.277 11 H -0.300 1.300 12 H -0.266 1.266 13 N -0.418 5.418 14 N -0.371 5.371 15 C 0.150 3.850 16 C -0.130 4.130 17 C -0.084 4.084 18 C -0.106 4.106 19 C -0.102 4.102 20 C -0.072 4.072 21 Cl -0.081 7.081 22 H 0.081 0.919 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.146 0.854 26 H 0.290 0.710 27 H 0.143 0.857 28 H 0.176 0.824 29 H 0.177 0.823 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.262 -13.950 1.403 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.032 4.032 3 C -0.340 4.340 4 C 0.032 3.968 5 C -0.490 4.490 6 H 0.091 0.909 7 C -0.153 4.153 8 N -0.484 5.484 9 Si 0.825 3.175 10 H -0.203 1.203 11 H -0.229 1.229 12 H -0.192 1.192 13 N -0.246 5.246 14 N -0.149 5.149 15 C 0.056 3.944 16 C -0.151 4.151 17 C -0.103 4.103 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.101 4.101 21 Cl -0.052 7.052 22 H 0.100 0.900 23 H 0.118 0.882 24 H 0.104 0.896 25 H 0.163 0.837 26 H 0.100 0.900 27 H 0.160 0.840 28 H 0.194 0.806 29 H 0.195 0.805 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.358 -14.930 1.262 21.456 hybrid contribution 0.663 0.884 -0.259 1.135 sum -14.695 -14.046 1.003 20.353 Atomic orbital electron populations 1.20597 0.84634 1.05064 1.03749 1.21490 0.95510 0.86035 1.00183 1.22413 0.91502 0.98580 1.21482 1.20927 0.94002 0.90350 0.91525 1.18557 0.88343 0.94655 1.47408 0.90879 1.26455 0.94796 1.03253 0.90823 1.69678 0.99731 1.40289 1.38730 0.84787 0.74238 0.78483 0.79956 1.20283 1.22907 1.19183 1.77332 0.93901 1.11871 1.41477 1.45467 1.03940 1.02600 1.62901 1.17733 0.98292 0.82280 0.96047 1.21418 0.98577 0.98597 0.96498 1.21555 0.99018 0.90722 0.98978 1.21618 0.95547 1.01881 0.93386 1.21322 0.97903 0.91934 1.00920 1.21498 0.98003 0.96561 0.93991 1.98386 1.59349 1.91542 1.55904 0.90048 0.88157 0.89586 0.83675 0.89996 0.83978 0.80620 0.80543 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.14 9.98 71.24 0.71 -1.43 16 2 C 0.09 3.49 6.76 41.06 0.28 3.76 16 3 C -0.31 -14.56 10.91 23.57 0.26 -14.30 16 4 C 0.19 10.42 6.63 41.82 0.28 10.70 16 5 C -0.45 -27.32 9.97 23.41 0.23 -27.08 16 6 H 0.07 4.57 8.06 -2.91 -0.02 4.54 16 7 C 0.06 3.74 5.52 85.23 0.47 4.21 16 8 N -0.85 -50.77 13.93 21.82 0.30 -50.47 16 9 Si 1.00 53.28 25.83 68.60 1.77 55.05 16 10 H -0.28 -15.17 7.11 99.48 0.71 -14.47 16 11 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 12 H -0.27 -14.85 6.50 99.48 0.65 -14.20 16 13 N -0.42 -22.60 6.66 -48.70 -0.32 -22.92 16 14 N -0.37 -16.61 3.31 -175.82 -0.58 -17.19 16 15 C 0.15 5.48 5.94 38.23 0.23 5.71 16 16 C -0.13 -3.43 8.42 22.40 0.19 -3.24 16 17 C -0.08 -1.47 10.04 22.25 0.22 -1.25 16 18 C -0.11 -1.79 10.04 22.30 0.22 -1.56 16 19 C -0.10 -2.48 9.82 22.27 0.22 -2.26 16 20 C -0.07 -2.51 6.34 22.46 0.14 -2.37 16 21 Cl -0.08 -3.34 27.43 -2.72 -0.07 -3.41 16 22 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.09 1.86 5.69 -2.39 -0.01 1.84 16 25 H 0.15 6.12 8.06 -2.91 -0.02 6.09 16 26 H 0.29 15.76 8.30 -92.71 -0.77 14.99 16 27 H 0.14 3.40 7.08 -2.91 -0.02 3.38 16 28 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 29 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -75.77 275.89 5.65 -70.12 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: 1.10 Total: -2.07 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 3.45 Total: -29.11 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -0.60 Total: -90.58 kcal Atomic # 14 Polarization: 53.28 SS G_CDS: 1.77 Total: 55.05 kcal Atomic # 17 Polarization: -3.34 SS G_CDS: -0.07 Total: -3.41 kcal Total: -75.77 5.65 -70.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041258307.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.457 kcal (2) G-P(sol) polarization free energy of solvation -75.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds