Wall clock time and date at job start Mon Mar 30 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34646 * 125.77072 * 2 1 4 4 C 1.46381 * 107.14983 * 180.02562 * 3 2 1 5 5 C 1.41265 * 126.49422 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99739 * 6.59670 * 5 4 3 7 7 C 1.39873 * 120.00127 * 186.59441 * 5 4 3 8 8 N 1.30873 * 120.00316 * 7.01051 * 7 5 4 9 9 Si 1.86808 * 119.99883 * 187.00730 * 7 5 4 10 10 H 1.48492 * 109.47282 * 265.02203 * 9 7 5 11 11 H 1.48505 * 109.46991 * 25.02259 * 9 7 5 12 12 H 1.48502 * 109.47090 * 145.02090 * 9 7 5 13 13 N 1.33010 * 107.01845 * 0.25472 * 4 3 2 14 14 N 1.36201 * 125.77338 * 180.02562 * 2 1 3 15 15 C 1.39819 * 125.43454 * 0.02562 * 14 2 1 16 16 C 1.38997 * 120.06812 * 42.32835 * 15 14 2 17 17 C 1.38061 * 119.94895 * 180.02562 * 16 15 14 18 18 C 1.38315 * 120.09134 * 0.02562 * 17 16 15 19 19 C 1.38414 * 120.14068 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 119.97183 * 180.02562 * 19 18 17 21 21 C 1.38217 * 120.05334 * 359.76235 * 19 18 17 22 22 H 1.09001 * 109.46501 * 87.68842 * 1 2 3 23 23 H 1.09000 * 109.46821 * 207.68436 * 1 2 3 24 24 H 1.08993 * 109.46982 * 327.68748 * 1 2 3 25 25 H 1.08001 * 126.42609 * 0.02562 * 3 2 1 26 26 H 0.97001 * 120.00514 * 180.02562 * 8 7 5 27 27 H 1.08003 * 120.02321 * 359.97438 * 16 15 14 28 28 H 1.07991 * 119.95733 * 180.02562 * 17 16 15 29 29 H 1.07994 * 119.92941 * 179.97438 * 18 17 16 30 30 H 1.07996 * 120.04854 * 180.28281 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2941 1.0925 0.0000 4 6 3.6813 0.6251 -0.0006 5 6 4.8401 1.4330 -0.0013 6 1 4.7517 2.5040 0.1060 7 6 6.1020 0.8459 -0.1410 8 7 6.2036 -0.4313 -0.4079 9 14 7.6422 1.8849 0.0534 10 1 8.1000 2.3461 -1.2817 11 1 7.3408 3.0620 0.9072 12 1 8.7103 1.0726 0.6895 13 7 3.6441 -0.7045 -0.0066 14 7 2.3033 -1.1050 -0.0005 15 6 1.8529 -2.4287 -0.0016 16 6 0.7869 -2.8009 -0.8123 17 6 0.3438 -4.1085 -0.8110 18 6 0.9589 -5.0484 -0.0038 19 6 2.0207 -4.6818 0.8049 20 17 2.7898 -5.8651 1.8157 21 6 2.4726 -3.3756 0.8042 22 1 -0.3632 0.0415 -1.0269 23 1 -0.3633 -0.9100 0.4775 24 1 -0.3633 0.8685 0.5493 25 1 1.9639 2.1208 0.0004 26 1 7.0787 -0.8385 -0.5044 27 1 0.3051 -2.0676 -1.4420 28 1 -0.4841 -4.3980 -1.4411 29 1 0.6099 -6.0704 -0.0046 30 1 3.3039 -3.0907 1.4319 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041258309.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:04 Heat of formation + Delta-G solvation = 82.632613 kcal Electronic energy + Delta-G solvation = -16603.596284 eV Core-core repulsion = 13811.860418 eV Total energy + Delta-G solvation = -2791.735866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.88489 -38.26109 -36.22631 -33.76164 -31.98090 -31.32473 -30.25300 -28.45579 -25.95074 -25.55851 -22.43314 -22.12139 -19.72954 -18.97517 -16.90742 -16.16443 -15.83979 -15.18553 -14.86347 -14.39130 -13.90493 -13.49452 -13.12016 -12.89185 -12.74547 -12.27977 -12.12205 -11.98114 -11.46919 -11.30090 -11.16840 -11.00931 -10.86431 -10.74977 -10.50098 -10.05481 -9.48003 -8.81664 -8.57259 -8.47122 -7.61087 -7.11124 -6.49101 -4.40784 1.34161 1.49685 2.30754 3.06515 3.17515 3.19660 3.21958 3.78869 3.98773 4.08170 4.23465 5.03453 5.23982 5.38276 5.43292 5.52116 5.62627 5.63210 5.80674 5.91616 6.03348 6.19552 6.39959 6.49670 6.51846 6.75774 6.91253 6.95091 7.23540 7.27506 7.64021 8.29507 8.55345 8.81401 9.04960 9.75899 10.48049 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.006173 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.044370 B = 4534.943540 C = 5665.469817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.048 3.952 3 C -0.276 4.276 4 C 0.214 3.786 5 C -0.437 4.437 6 H 0.084 0.916 7 C 0.072 3.928 8 N -0.765 5.765 9 Si 0.910 3.090 10 H -0.272 1.272 11 H -0.263 1.263 12 H -0.278 1.278 13 N -0.325 5.325 14 N -0.379 5.379 15 C 0.221 3.779 16 C -0.152 4.152 17 C -0.088 4.088 18 C -0.147 4.147 19 C -0.012 4.012 20 Cl -0.078 7.078 21 C -0.118 4.118 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.128 0.872 26 H 0.274 0.726 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.669 -5.926 0.631 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 C -0.306 4.306 4 C 0.059 3.941 5 C -0.476 4.476 6 H 0.102 0.898 7 C -0.149 4.149 8 N -0.392 5.392 9 Si 0.735 3.265 10 H -0.198 1.198 11 H -0.186 1.186 12 H -0.204 1.204 13 N -0.150 5.150 14 N -0.155 5.155 15 C 0.124 3.876 16 C -0.174 4.174 17 C -0.107 4.107 18 C -0.166 4.166 19 C -0.039 4.039 20 Cl -0.050 7.050 21 C -0.139 4.139 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.146 0.854 26 H 0.085 0.915 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.872 -7.277 0.685 11.494 hybrid contribution 0.422 1.089 0.103 1.172 sum -8.450 -6.188 0.788 10.503 Atomic orbital electron populations 1.20404 0.89724 1.02446 1.01840 1.20737 0.92867 0.88138 1.05159 1.22414 0.93665 0.96605 1.17876 1.20715 0.91237 0.90213 0.91937 1.18630 0.88248 0.93916 1.46856 0.89752 1.25859 1.00573 0.95098 0.93396 1.69927 1.25517 1.11064 1.32686 0.86276 0.80800 0.80415 0.79030 1.19794 1.18649 1.20357 1.79088 0.86003 1.12090 1.37842 1.46231 1.06710 1.00658 1.61866 1.17188 0.93422 0.83391 0.93631 1.21196 0.99542 0.96931 0.99707 1.20782 0.99477 0.92032 0.98384 1.20856 0.96936 1.00269 0.98578 1.20649 0.96614 0.89946 0.96684 1.98345 1.81082 1.57475 1.68059 1.20954 1.02045 0.90868 1.00019 0.91534 0.92058 0.90942 0.85436 0.91513 0.85397 0.85133 0.85380 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 8.77 36.01 0.32 -1.01 16 2 C 0.05 1.03 6.72 -81.92 -0.55 0.48 16 3 C -0.28 -6.55 10.92 -37.58 -0.41 -6.96 16 4 C 0.21 5.96 6.89 -82.93 -0.57 5.39 16 5 C -0.44 -12.00 9.42 -37.82 -0.36 -12.36 16 6 H 0.08 2.15 7.85 -52.48 -0.41 1.74 16 7 C 0.07 1.91 5.49 -17.35 -0.10 1.81 16 8 N -0.76 -21.55 12.03 55.54 0.67 -20.88 16 9 Si 0.91 19.47 29.57 -169.99 -5.03 14.44 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 N -0.33 -9.22 10.74 33.26 0.36 -8.86 16 14 N -0.38 -9.06 3.70 -6.95 -0.03 -9.09 16 15 C 0.22 4.51 6.03 -83.68 -0.50 4.01 16 16 C -0.15 -2.49 8.31 -39.37 -0.33 -2.82 16 17 C -0.09 -1.18 10.04 -39.62 -0.40 -1.57 16 18 C -0.15 -2.03 9.83 -39.49 -0.39 -2.42 16 19 C -0.01 -0.19 6.32 -39.52 -0.25 -0.44 16 20 Cl -0.08 -1.17 28.95 -51.86 -1.50 -2.67 16 21 C -0.12 -2.32 9.61 -39.34 -0.38 -2.70 16 22 H 0.07 0.90 7.92 -51.93 -0.41 0.49 16 23 H 0.06 0.89 7.00 -51.93 -0.36 0.52 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.13 2.67 8.06 -52.49 -0.42 2.24 16 26 H 0.27 7.09 8.30 -40.82 -0.34 6.75 16 27 H 0.13 1.93 6.79 -52.48 -0.36 1.58 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.14 3.05 8.06 -52.49 -0.42 2.62 16 LS Contribution 282.89 15.07 4.26 4.26 Total: -1.00 -30.91 282.89 -7.97 -38.88 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -2.79 Total: 2.50 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -3.91 Total: -18.60 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 1.00 Total: -38.83 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.50 Total: -2.67 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.91 -7.97 -38.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041258309.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.517 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds