Wall clock time and date at job start Mon Mar 30 2020 06:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48497 * 109.47336 * 270.00114 * 3 2 1 5 5 H 1.48501 * 109.47160 * 29.99920 * 3 2 1 6 6 H 1.48500 * 109.47142 * 150.00093 * 3 2 1 7 7 C 1.37873 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99853 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46776 * 179.97438 * 9 7 2 11 11 C 1.34844 * 125.89379 * 124.99981 * 10 9 7 12 12 C 1.36431 * 107.60901 * 179.97438 * 11 10 9 13 13 C 1.48474 * 126.22093 * 179.97438 * 12 11 10 14 14 C 1.39297 * 120.12276 * 130.00214 * 13 12 11 15 15 C 1.38016 * 119.89648 * 179.97438 * 14 13 12 16 16 C 1.38340 * 120.14229 * 0.02562 * 15 14 13 17 17 C 1.38283 * 120.24767 * 0.02562 * 16 15 14 18 18 C 1.38165 * 120.09947 * 359.69639 * 17 16 15 19 19 Cl 1.73605 * 120.06805 * 180.30274 * 18 17 16 20 20 C 1.40843 * 107.55712 * 0.02562 * 12 11 10 21 21 N 1.30679 * 108.09827 * 0.02562 * 20 12 11 22 22 H 0.97004 * 119.99925 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47370 * 59.99969 * 9 7 2 24 24 H 1.08999 * 109.46889 * 300.00012 * 9 7 2 25 25 H 1.07999 * 126.19796 * 359.71717 * 11 10 9 26 26 H 1.08001 * 120.05269 * 359.96024 * 14 13 12 27 27 H 1.08002 * 119.93079 * 179.97438 * 15 14 13 28 28 H 1.08004 * 119.87450 * 179.97438 * 16 15 14 29 29 H 1.07997 * 119.95111 * 179.97438 * 17 16 15 30 30 H 1.07995 * 125.95200 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0027 11 6 2.2405 -4.6215 0.8912 12 6 3.2686 -5.4465 0.5395 13 6 3.6785 -6.6871 1.2448 14 6 3.8633 -7.8687 0.5306 15 6 4.2450 -9.0191 1.1908 16 6 4.4437 -9.0009 2.5598 17 6 4.2609 -7.8315 3.2747 18 6 3.8845 -6.6727 2.6232 19 17 3.6629 -5.2031 3.5205 20 6 3.8711 -4.9069 -0.6135 21 7 3.2314 -3.8125 -0.9314 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6239 -2.5574 0.8880 25 1 1.5794 -4.7506 1.7354 26 1 3.7080 -7.8847 -0.5381 27 1 4.3880 -9.9356 0.6377 28 1 4.7419 -9.9037 3.0721 29 1 4.4169 -7.8228 4.3433 30 1 4.7152 -5.3242 -1.1423 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049822224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:19 Heat of formation + Delta-G solvation = 85.303712 kcal Electronic energy + Delta-G solvation = -16261.982121 eV Core-core repulsion = 13470.362083 eV Total energy + Delta-G solvation = -2791.620038 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50958 -38.84566 -36.18219 -33.80237 -32.24590 -31.17043 -30.68182 -28.59209 -26.76346 -23.47030 -22.69890 -22.32412 -19.96882 -19.78905 -17.24211 -16.53731 -16.07241 -15.23852 -15.08926 -14.52529 -14.07746 -13.78571 -13.50693 -13.38036 -13.06280 -12.39012 -12.19441 -11.83503 -11.54143 -11.41667 -11.30932 -10.97860 -10.87388 -10.55854 -10.28197 -10.04915 -9.66765 -9.05201 -8.72083 -8.70434 -8.50061 -7.49852 -6.26838 -4.31862 1.19011 1.28926 2.38126 2.73044 3.23456 3.29073 3.29938 3.33908 3.53901 3.80195 4.30453 4.85467 4.90184 4.98531 5.09435 5.30982 5.41545 5.47937 5.56496 5.80147 5.96232 6.14173 6.24510 6.32100 6.44705 6.64135 6.84496 6.86188 6.99609 7.30875 7.66778 7.83405 7.93752 8.53574 8.76843 9.34058 10.82294 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.033945 B = 0.004857 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.667095 B = 5763.364016 C = 6174.453279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.070 0.930 9 C 0.254 3.746 10 N -0.320 5.320 11 C 0.084 3.916 12 C -0.249 4.249 13 C 0.035 3.965 14 C -0.107 4.107 15 C -0.115 4.115 16 C -0.127 4.127 17 C -0.110 4.110 18 C -0.039 4.039 19 Cl -0.064 7.064 20 C 0.040 3.960 21 N -0.281 5.281 22 H 0.268 0.732 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.164 0.836 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.530 -16.467 5.154 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.137 3.863 10 N -0.098 5.098 11 C -0.068 4.068 12 C -0.261 4.261 13 C 0.033 3.967 14 C -0.126 4.126 15 C -0.133 4.133 16 C -0.145 4.145 17 C -0.128 4.128 18 C -0.066 4.066 19 Cl -0.035 7.035 20 C -0.146 4.146 21 N -0.102 5.102 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.182 0.818 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.134 -15.038 4.383 16.822 hybrid contribution 0.381 0.348 0.760 0.918 sum 6.515 -14.690 5.143 16.873 Atomic orbital electron populations 1.69918 1.06062 1.27686 1.49654 1.24934 0.94983 0.99569 0.94499 0.86317 0.79678 0.82040 0.78436 1.20256 1.20958 1.19667 1.21224 0.94012 0.89236 1.52238 0.91221 1.19790 0.85801 0.81389 0.99340 1.49425 1.23422 1.18869 1.18083 1.22497 0.99229 0.89443 0.95644 1.18487 1.04395 1.00302 1.02965 1.18047 0.96055 0.92532 0.90087 1.21209 0.99918 0.91188 1.00267 1.21135 0.99404 0.98214 0.94545 1.21018 1.01713 0.97478 0.94320 1.20945 1.00347 0.91350 1.00200 1.21114 1.04974 0.88328 0.92195 1.98385 1.95523 1.35125 1.74448 1.23709 1.00475 0.94276 0.96095 1.77301 1.01103 1.17374 1.14432 0.92286 0.93514 0.92720 0.81839 0.85184 0.85786 0.85692 0.85375 0.81105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.73 9.23 -34.44 -0.32 -15.05 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.25 6.44 6.26 -5.19 -0.03 6.41 16 10 N -0.32 -7.29 3.66 -62.27 -0.23 -7.52 16 11 C 0.08 1.63 9.95 -16.88 -0.17 1.46 16 12 C -0.25 -4.37 5.15 -105.34 -0.54 -4.91 16 13 C 0.03 0.51 5.75 -104.86 -0.60 -0.09 16 14 C -0.11 -1.30 9.72 -39.27 -0.38 -1.69 16 15 C -0.11 -1.15 10.03 -39.63 -0.40 -1.55 16 16 C -0.13 -1.25 10.04 -39.53 -0.40 -1.64 16 17 C -0.11 -1.25 9.82 -39.59 -0.39 -1.64 16 18 C -0.04 -0.55 6.33 -39.18 -0.25 -0.80 16 19 Cl -0.06 -0.97 26.63 -51.86 -1.38 -2.35 16 20 C 0.04 0.73 11.94 -17.06 -0.20 0.53 16 21 N -0.28 -6.30 12.37 30.80 0.38 -5.92 16 22 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 24 H 0.05 1.37 8.07 -51.93 -0.42 0.95 16 25 H 0.16 2.85 7.73 -52.49 -0.41 2.44 16 26 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 286.83 15.07 4.32 4.32 Total: -1.00 -29.86 286.83 -7.87 -37.73 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -2.91 Total: -0.77 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -3.78 Total: -17.33 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.89 Total: -38.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.38 Total: -2.35 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.86 -7.87 -37.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.035 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds