Wall clock time and date at job start Mon Mar 30 2020 06:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48497 * 109.47336 * 270.00114 * 3 2 1 5 5 H 1.48501 * 109.47160 * 29.99920 * 3 2 1 6 6 H 1.48500 * 109.47142 * 150.00093 * 3 2 1 7 7 C 1.37873 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99853 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46776 * 179.97438 * 9 7 2 11 11 C 1.34844 * 125.89379 * 124.99981 * 10 9 7 12 12 C 1.36431 * 107.60901 * 179.97438 * 11 10 9 13 13 C 1.48474 * 126.22093 * 179.97438 * 12 11 10 14 14 C 1.39297 * 120.12276 * 130.00214 * 13 12 11 15 15 C 1.38016 * 119.89648 * 179.97438 * 14 13 12 16 16 C 1.38340 * 120.14229 * 0.02562 * 15 14 13 17 17 C 1.38283 * 120.24767 * 0.02562 * 16 15 14 18 18 C 1.38165 * 120.09947 * 359.69639 * 17 16 15 19 19 Cl 1.73605 * 120.06805 * 180.30274 * 18 17 16 20 20 C 1.40843 * 107.55712 * 0.02562 * 12 11 10 21 21 N 1.30679 * 108.09827 * 0.02562 * 20 12 11 22 22 H 0.97004 * 119.99925 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47370 * 59.99969 * 9 7 2 24 24 H 1.08999 * 109.46889 * 300.00012 * 9 7 2 25 25 H 1.07999 * 126.19796 * 359.71717 * 11 10 9 26 26 H 1.08001 * 120.05269 * 359.96024 * 14 13 12 27 27 H 1.08002 * 119.93079 * 179.97438 * 15 14 13 28 28 H 1.08004 * 119.87450 * 179.97438 * 16 15 14 29 29 H 1.07997 * 119.95111 * 179.97438 * 17 16 15 30 30 H 1.07995 * 125.95200 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0027 11 6 2.2405 -4.6215 0.8912 12 6 3.2686 -5.4465 0.5395 13 6 3.6785 -6.6871 1.2448 14 6 3.8633 -7.8687 0.5306 15 6 4.2450 -9.0191 1.1908 16 6 4.4437 -9.0009 2.5598 17 6 4.2609 -7.8315 3.2747 18 6 3.8845 -6.6727 2.6232 19 17 3.6629 -5.2031 3.5205 20 6 3.8711 -4.9069 -0.6135 21 7 3.2314 -3.8125 -0.9314 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6239 -2.5574 0.8880 25 1 1.5794 -4.7506 1.7354 26 1 3.7080 -7.8847 -0.5381 27 1 4.3880 -9.9356 0.6377 28 1 4.7419 -9.9037 3.0721 29 1 4.4169 -7.8228 4.3433 30 1 4.7152 -5.3242 -1.1423 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049822224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:19 Heat of formation + Delta-G solvation = 69.121530 kcal Electronic energy + Delta-G solvation = -16262.683834 eV Core-core repulsion = 13470.362083 eV Total energy + Delta-G solvation = -2792.321750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.01224 -39.83220 -37.26245 -35.74412 -33.78767 -32.66542 -31.58958 -30.12527 -28.44794 -25.32447 -23.73774 -23.41688 -21.53854 -21.16757 -18.73361 -18.32418 -17.37714 -16.49227 -16.28885 -16.13949 -15.64839 -15.06687 -14.66563 -14.48994 -14.34560 -14.14564 -13.78644 -13.52894 -13.00292 -12.77407 -12.55880 -12.35208 -12.32819 -12.24535 -11.82585 -11.64940 -11.39224 -10.78452 -10.28989 -10.10894 -9.65299 -8.89024 -8.36692 -6.51089 0.21819 0.39008 1.18394 1.33776 1.35696 1.36919 1.48080 1.87246 1.94617 2.32656 2.83595 2.95158 3.74970 3.94764 4.04740 4.13891 4.32217 4.48270 4.53013 4.56046 4.82914 4.87484 4.93982 5.06876 5.16064 5.39406 5.52946 5.54936 5.60531 5.74626 5.87446 6.00728 6.20828 6.59657 6.98838 7.19094 8.71359 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.033945 B = 0.004857 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.667095 B = 5763.364016 C = 6174.453279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.270 3.730 10 N -0.348 5.348 11 C 0.071 3.929 12 C -0.229 4.229 13 C 0.003 3.997 14 C -0.108 4.108 15 C -0.107 4.107 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.053 4.053 19 Cl -0.087 7.087 20 C 0.048 3.952 21 N -0.328 5.328 22 H 0.273 0.727 23 H 0.023 0.977 24 H 0.049 0.951 25 H 0.174 0.826 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.145 0.855 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.069 -18.726 5.673 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.151 3.849 10 N -0.126 5.126 11 C -0.078 4.078 12 C -0.241 4.241 13 C 0.001 3.999 14 C -0.126 4.126 15 C -0.125 4.125 16 C -0.130 4.130 17 C -0.132 4.132 18 C -0.080 4.080 19 Cl -0.058 7.058 20 C -0.137 4.137 21 N -0.150 5.150 22 H 0.082 0.918 23 H 0.041 0.959 24 H 0.067 0.933 25 H 0.191 0.809 26 H 0.158 0.842 27 H 0.177 0.823 28 H 0.179 0.821 29 H 0.163 0.837 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 7.675 -17.329 4.915 19.579 hybrid contribution -0.018 0.794 0.632 1.015 sum 7.657 -16.535 5.547 19.047 Atomic orbital electron populations 1.69996 1.07248 1.28829 1.49861 1.25744 0.95850 1.02759 0.93772 0.85345 0.78345 0.78059 0.78680 1.19606 1.19545 1.19784 1.21370 0.93348 0.90892 1.52962 0.92954 1.19295 0.85971 0.81893 0.97773 1.49097 1.24228 1.19533 1.19774 1.22828 1.00228 0.89202 0.95584 1.18750 1.02619 1.00661 1.02055 1.18036 0.99023 0.92285 0.90542 1.21394 0.99432 0.90958 1.00846 1.21543 0.97492 0.98557 0.94886 1.21498 0.99250 0.97920 0.94374 1.21235 0.99776 0.90937 1.01288 1.21287 1.06367 0.88403 0.91973 1.98376 1.95754 1.36787 1.74917 1.24343 1.00347 0.92843 0.96203 1.77219 1.02240 1.19715 1.15798 0.91774 0.95950 0.93276 0.80870 0.84213 0.82307 0.82057 0.83709 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.15 13.29 21.45 0.28 -52.87 16 2 C 0.02 1.08 5.46 84.65 0.46 1.54 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.55 -31.68 9.23 25.60 0.24 -31.44 16 8 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 9 C 0.27 14.42 6.26 85.63 0.54 14.96 16 10 N -0.35 -16.52 3.66 -350.93 -1.28 -17.80 16 11 C 0.07 2.84 9.95 83.81 0.83 3.68 16 12 C -0.23 -7.97 5.15 -20.33 -0.10 -8.08 16 13 C 0.00 0.09 5.75 -20.02 -0.12 -0.03 16 14 C -0.11 -2.29 9.72 22.47 0.22 -2.07 16 15 C -0.11 -1.65 10.03 22.24 0.22 -1.42 16 16 C -0.11 -1.67 10.04 22.30 0.22 -1.45 16 17 C -0.11 -2.25 9.82 22.26 0.22 -2.04 16 18 C -0.05 -1.42 6.33 22.53 0.14 -1.28 16 19 Cl -0.09 -2.65 26.63 -2.72 -0.07 -2.72 16 20 C 0.05 1.75 11.94 85.50 1.02 2.77 16 21 N -0.33 -15.16 12.37 -56.46 -0.70 -15.85 16 22 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 23 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 2.62 8.07 -2.39 -0.02 2.60 16 25 H 0.17 6.30 7.73 -2.91 -0.02 6.28 16 26 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 27 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 28 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 29 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.21 5.72 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -66.58 286.83 5.30 -61.28 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.15 Total: 6.30 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 3.90 Total: -24.86 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -1.70 Total: -86.53 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.07 Total: -2.72 kcal Total: -66.58 5.30 -61.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.401 kcal (2) G-P(sol) polarization free energy of solvation -66.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds