Wall clock time and date at job start Mon Mar 30 2020 06:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47246 * 269.99647 * 3 2 1 5 5 H 1.48498 * 109.47157 * 29.99796 * 3 2 1 6 6 H 1.48497 * 109.46859 * 150.00036 * 3 2 1 7 7 C 1.37880 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99348 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99958 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46812 * 180.02562 * 9 7 2 11 11 C 1.34824 * 125.89613 * 125.00344 * 10 9 7 12 12 C 1.36433 * 107.60670 * 180.24728 * 11 10 9 13 13 C 1.48479 * 126.21956 * 179.74650 * 12 11 10 14 14 C 1.39336 * 120.11059 * 359.71991 * 13 12 11 15 15 C 1.38006 * 119.90662 * 179.74652 * 14 13 12 16 16 C 1.38322 * 120.13326 * 0.52699 * 15 14 13 17 17 C 1.38415 * 120.22040 * 359.74773 * 16 15 14 18 18 Cl 1.73594 * 119.95237 * 179.97438 * 17 16 15 19 19 C 1.38167 * 120.08856 * 359.97438 * 17 16 15 20 20 C 1.40841 * 107.55903 * 359.63815 * 12 11 10 21 21 N 1.30676 * 108.09518 * 0.36278 * 20 12 11 22 22 H 0.97001 * 120.00102 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47470 * 60.00130 * 9 7 2 24 24 H 1.09002 * 109.47250 * 299.99462 * 9 7 2 25 25 H 1.08002 * 126.19174 * 359.97311 * 11 10 9 26 26 H 1.08002 * 120.04108 * 0.02562 * 14 13 12 27 27 H 1.08006 * 119.93673 * 180.27794 * 15 14 13 28 28 H 1.07992 * 119.88979 * 179.71785 * 16 15 14 29 29 H 1.08004 * 120.06000 * 180.02562 * 19 17 16 30 30 H 1.07996 * 125.95220 * 180.12659 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.8544 -3.1116 -0.8934 12 6 5.0501 -4.4164 -0.5462 13 6 5.9139 -5.3932 -1.2564 14 6 6.6151 -5.0066 -2.3966 15 6 7.4208 -5.9165 -3.0504 16 6 7.5249 -7.2139 -2.5823 17 6 6.8262 -7.6054 -1.4534 18 17 6.9614 -9.2356 -0.8723 19 6 6.0214 -6.7003 -0.7884 20 6 4.2859 -4.6676 0.6099 21 7 3.6594 -3.5663 0.9296 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6801 0.8910 24 1 3.8753 -0.6805 -0.8889 25 1 5.2995 -2.6019 -1.7351 26 1 6.5317 -3.9950 -2.7656 27 1 7.9681 -5.6161 -3.9318 28 1 8.1530 -7.9239 -3.0996 29 1 5.4767 -7.0062 0.0927 30 1 4.2250 -5.6078 1.1378 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049822225.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:31 Heat of formation + Delta-G solvation = 87.938865 kcal Electronic energy + Delta-G solvation = -15962.468433 eV Core-core repulsion = 13170.962663 eV Total energy + Delta-G solvation = -2791.505770 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74136 -38.92968 -36.48925 -33.89282 -32.34023 -31.47150 -30.79118 -28.88697 -27.23037 -23.45313 -22.87177 -22.29633 -19.96290 -19.79055 -17.43400 -17.09561 -15.93672 -15.50139 -15.12164 -14.63391 -14.32169 -13.81963 -13.55249 -13.39528 -13.33924 -12.61142 -12.57465 -12.20693 -11.76024 -11.59061 -11.30163 -11.14183 -10.96393 -10.78579 -10.41173 -10.05848 -9.71081 -9.47154 -8.87371 -8.81634 -8.75014 -7.45384 -6.30826 -4.34567 1.07635 1.23447 2.08288 2.54745 3.08619 3.14097 3.15061 3.16165 3.30800 3.97198 4.15765 4.72885 4.83705 4.95655 5.02514 5.17625 5.24886 5.32342 5.41744 5.74199 5.81583 5.91981 6.10042 6.22749 6.32827 6.33794 6.53099 6.68572 6.81060 7.04415 7.23398 7.56575 8.21685 8.33618 8.77766 9.22919 10.81664 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.043780 B = 0.003800 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.405179 B = 7367.035958 C = 7765.220811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.078 3.922 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.227 3.773 10 N -0.319 5.319 11 C 0.075 3.925 12 C -0.239 4.239 13 C 0.048 3.952 14 C -0.128 4.128 15 C -0.098 4.098 16 C -0.137 4.137 17 C -0.023 4.023 18 Cl -0.081 7.081 19 C -0.120 4.120 20 C 0.041 3.959 21 N -0.270 5.270 22 H 0.269 0.731 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.170 0.830 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.735 -11.080 -5.126 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.104 0.896 9 C 0.108 3.892 10 N -0.096 5.096 11 C -0.077 4.077 12 C -0.251 4.251 13 C 0.046 3.954 14 C -0.147 4.147 15 C -0.116 4.116 16 C -0.156 4.156 17 C -0.049 4.049 18 Cl -0.052 7.052 19 C -0.139 4.139 20 C -0.145 4.145 21 N -0.090 5.090 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.187 0.813 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 14.655 -10.329 -4.204 18.416 hybrid contribution 0.835 0.386 -0.602 1.099 sum 15.490 -9.943 -4.806 19.023 Atomic orbital electron populations 1.69867 1.06166 1.27445 1.48634 1.24827 0.94877 0.98809 0.94116 0.86907 0.80428 0.83820 0.78951 1.19653 1.20391 1.18884 1.21058 0.87523 0.95847 1.53261 0.89556 1.20132 0.97729 0.72883 0.98419 1.49054 1.30730 1.11302 1.18465 1.22534 0.95036 0.94075 0.96048 1.18630 1.10305 0.93675 1.02517 1.18035 0.93217 0.91306 0.92854 1.21228 0.97703 1.00135 0.95631 1.20963 0.98447 0.92570 0.99647 1.20921 1.01367 0.97047 0.96283 1.20776 1.01055 0.85919 0.97193 1.98356 1.97263 1.21048 1.88522 1.20954 0.99788 0.92187 1.01014 1.23837 0.96462 0.97864 0.96309 1.77415 1.21125 0.96475 1.14035 0.92038 0.93665 0.93381 0.81256 0.85579 0.85376 0.85524 0.84988 0.80686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.06 13.96 55.43 0.77 -25.29 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 19.57 27.47 -169.99 -4.67 14.90 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 7 C -0.54 -14.81 9.79 -34.44 -0.34 -15.15 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 C 0.23 5.14 5.32 -5.19 -0.03 5.11 16 10 N -0.32 -6.73 3.66 -62.28 -0.23 -6.96 16 11 C 0.07 1.28 10.83 -16.89 -0.18 1.10 16 12 C -0.24 -3.88 6.04 -105.34 -0.64 -4.52 16 13 C 0.05 0.65 5.88 -104.89 -0.62 0.04 16 14 C -0.13 -1.50 9.56 -39.26 -0.38 -1.88 16 15 C -0.10 -0.99 10.03 -39.64 -0.40 -1.39 16 16 C -0.14 -1.44 9.82 -39.49 -0.39 -1.83 16 17 C -0.02 -0.27 6.31 -39.54 -0.25 -0.52 16 18 Cl -0.08 -0.88 28.95 -51.86 -1.50 -2.38 16 19 C -0.12 -1.54 9.36 -39.23 -0.37 -1.90 16 20 C 0.04 0.73 11.42 -17.06 -0.19 0.53 16 21 N -0.27 -5.85 12.37 30.80 0.38 -5.47 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.05 1.02 7.20 -51.93 -0.37 0.65 16 24 H 0.05 0.98 7.49 -51.93 -0.39 0.59 16 25 H 0.17 2.24 7.28 -52.49 -0.38 1.86 16 26 H 0.13 1.28 7.02 -52.49 -0.37 0.91 16 27 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 28 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.13 1.56 7.05 -52.48 -0.37 1.19 16 30 H 0.18 2.45 7.35 -52.49 -0.39 2.06 16 LS Contribution 282.87 15.07 4.26 4.26 Total: -1.00 -30.57 282.87 -7.56 -38.13 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -2.70 Total: 1.18 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -3.87 Total: -18.37 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.93 Total: -37.72 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.67 Total: 14.90 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.57 -7.56 -38.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822225.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.064 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds