Wall clock time and date at job start Mon Mar 30 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47246 * 269.99647 * 3 2 1 5 5 H 1.48498 * 109.47157 * 29.99796 * 3 2 1 6 6 H 1.48497 * 109.46859 * 150.00036 * 3 2 1 7 7 C 1.37880 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99348 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99958 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46812 * 180.02562 * 9 7 2 11 11 C 1.34824 * 125.89613 * 125.00344 * 10 9 7 12 12 C 1.36433 * 107.60670 * 180.24728 * 11 10 9 13 13 C 1.48479 * 126.21956 * 179.74650 * 12 11 10 14 14 C 1.39336 * 120.11059 * 359.71991 * 13 12 11 15 15 C 1.38006 * 119.90662 * 179.74652 * 14 13 12 16 16 C 1.38322 * 120.13326 * 0.52699 * 15 14 13 17 17 C 1.38415 * 120.22040 * 359.74773 * 16 15 14 18 18 Cl 1.73594 * 119.95237 * 179.97438 * 17 16 15 19 19 C 1.38167 * 120.08856 * 359.97438 * 17 16 15 20 20 C 1.40841 * 107.55903 * 359.63815 * 12 11 10 21 21 N 1.30676 * 108.09518 * 0.36278 * 20 12 11 22 22 H 0.97001 * 120.00102 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47470 * 60.00130 * 9 7 2 24 24 H 1.09002 * 109.47250 * 299.99462 * 9 7 2 25 25 H 1.08002 * 126.19174 * 359.97311 * 11 10 9 26 26 H 1.08002 * 120.04108 * 0.02562 * 14 13 12 27 27 H 1.08006 * 119.93673 * 180.27794 * 15 14 13 28 28 H 1.07992 * 119.88979 * 179.71785 * 16 15 14 29 29 H 1.08004 * 120.06000 * 180.02562 * 19 17 16 30 30 H 1.07996 * 125.95220 * 180.12659 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.8544 -3.1116 -0.8934 12 6 5.0501 -4.4164 -0.5462 13 6 5.9139 -5.3932 -1.2564 14 6 6.6151 -5.0066 -2.3966 15 6 7.4208 -5.9165 -3.0504 16 6 7.5249 -7.2139 -2.5823 17 6 6.8262 -7.6054 -1.4534 18 17 6.9614 -9.2356 -0.8723 19 6 6.0214 -6.7003 -0.7884 20 6 4.2859 -4.6676 0.6099 21 7 3.6594 -3.5663 0.9296 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6801 0.8910 24 1 3.8753 -0.6805 -0.8889 25 1 5.2995 -2.6019 -1.7351 26 1 6.5317 -3.9950 -2.7656 27 1 7.9681 -5.6161 -3.9318 28 1 8.1530 -7.9239 -3.0996 29 1 5.4767 -7.0062 0.0927 30 1 4.2250 -5.6078 1.1378 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049822225.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:30 Heat of formation + Delta-G solvation = 69.923654 kcal Electronic energy + Delta-G solvation = -15963.249631 eV Core-core repulsion = 13170.962663 eV Total energy + Delta-G solvation = -2792.286968 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10159 -39.86400 -37.36094 -35.67915 -33.93960 -32.79834 -31.71354 -30.35208 -28.70647 -25.05266 -23.88074 -23.50805 -21.24900 -21.16023 -19.11592 -18.55036 -17.18350 -16.50216 -16.35379 -16.05347 -15.85013 -15.04956 -14.78167 -14.48676 -14.38671 -14.34209 -13.94212 -13.64308 -13.06879 -12.66717 -12.51573 -12.46776 -12.17119 -12.09924 -11.87144 -11.78939 -11.34834 -10.89490 -10.56882 -10.31666 -9.67987 -8.67500 -8.39590 -6.50999 0.12150 0.35164 1.18096 1.21280 1.35062 1.38227 1.47889 1.82337 1.95459 2.27309 2.92660 2.97854 3.64437 3.87997 4.02413 4.11470 4.27883 4.32937 4.39742 4.49661 4.64655 4.75441 4.93924 4.95409 5.08181 5.22433 5.34406 5.47080 5.64205 5.79169 5.91546 5.97229 6.34116 6.54595 6.91032 7.12269 8.77464 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.043780 B = 0.003800 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.405179 B = 7367.035958 C = 7765.220811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.550 4.550 8 H 0.025 0.975 9 C 0.235 3.765 10 N -0.347 5.347 11 C 0.072 3.928 12 C -0.230 4.230 13 C 0.022 3.978 14 C -0.128 4.128 15 C -0.093 4.093 16 C -0.130 4.130 17 C -0.036 4.036 18 Cl -0.077 7.077 19 C -0.129 4.129 20 C 0.042 3.958 21 N -0.332 5.332 22 H 0.273 0.727 23 H 0.046 0.954 24 H 0.082 0.918 25 H 0.209 0.791 26 H 0.144 0.856 27 H 0.162 0.838 28 H 0.149 0.851 29 H 0.131 0.869 30 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.019 -10.688 -6.926 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.589 4.589 8 H 0.044 0.956 9 C 0.115 3.885 10 N -0.125 5.125 11 C -0.077 4.077 12 C -0.242 4.242 13 C 0.021 3.979 14 C -0.146 4.146 15 C -0.111 4.111 16 C -0.149 4.149 17 C -0.062 4.062 18 Cl -0.048 7.048 19 C -0.148 4.148 20 C -0.144 4.144 21 N -0.153 5.153 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.226 0.774 26 H 0.162 0.838 27 H 0.180 0.820 28 H 0.167 0.833 29 H 0.149 0.851 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 17.973 -9.984 -6.017 21.422 hybrid contribution -0.150 -0.005 -0.093 0.176 sum 17.823 -9.990 -6.109 21.326 Atomic orbital electron populations 1.70054 1.08651 1.28900 1.50443 1.25950 0.95771 1.03640 0.93108 0.85601 0.79452 0.77057 0.80171 1.17484 1.20701 1.16231 1.21219 0.90510 0.93762 1.53359 0.95633 1.19904 0.94175 0.74656 0.99723 1.48864 1.32783 1.10879 1.20013 1.23202 0.93964 0.94489 0.96089 1.18909 1.09613 0.93999 1.01689 1.18006 0.94520 0.91159 0.94241 1.21508 0.97027 1.01398 0.94690 1.21342 0.97705 0.91873 1.00201 1.21305 1.00424 0.97795 0.95379 1.20906 1.01406 0.86092 0.97818 1.98358 1.97238 1.20610 1.88587 1.21027 1.00155 0.92316 1.01299 1.24363 0.95448 0.97720 0.96840 1.77321 1.23697 0.98077 1.16218 0.91814 0.93612 0.90011 0.77392 0.83845 0.82008 0.83282 0.85067 0.78260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 2 C 0.01 0.80 5.47 84.65 0.46 1.26 16 3 Si 0.96 39.93 27.47 68.60 1.88 41.81 16 4 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.24 -8.96 6.54 99.48 0.65 -8.31 16 7 C -0.55 -31.43 9.79 25.60 0.25 -31.18 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 9 C 0.24 10.56 5.32 85.63 0.46 11.02 16 10 N -0.35 -14.77 3.66 -350.96 -1.28 -16.05 16 11 C 0.07 2.36 10.83 83.81 0.91 3.27 16 12 C -0.23 -7.27 6.04 -20.33 -0.12 -7.39 16 13 C 0.02 0.57 5.88 -20.04 -0.12 0.46 16 14 C -0.13 -2.56 9.56 22.48 0.22 -2.35 16 15 C -0.09 -1.50 10.03 22.23 0.22 -1.27 16 16 C -0.13 -2.28 9.82 22.33 0.22 -2.06 16 17 C -0.04 -0.76 6.31 22.30 0.14 -0.62 16 18 Cl -0.08 -1.54 28.95 -2.72 -0.08 -1.62 16 19 C -0.13 -3.11 9.36 22.50 0.21 -2.90 16 20 C 0.04 1.50 11.42 85.50 0.98 2.48 16 21 N -0.33 -14.94 12.37 -56.46 -0.70 -15.64 16 22 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 23 H 0.05 2.03 7.20 -2.39 -0.02 2.01 16 24 H 0.08 3.10 7.49 -2.39 -0.02 3.08 16 25 H 0.21 4.81 7.28 -2.91 -0.02 4.79 16 26 H 0.14 2.31 7.02 -2.91 -0.02 2.29 16 27 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 28 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.13 3.04 7.05 -2.91 -0.02 3.02 16 30 H 0.20 5.66 7.35 -2.91 -0.02 5.64 16 Total: -1.00 -71.08 282.87 5.05 -66.03 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.11 Total: 12.22 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 3.82 Total: -29.29 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -1.68 Total: -89.14 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 1.88 Total: 41.81 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -71.08 5.05 -66.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822225.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.952 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds