Wall clock time and date at job start Mon Mar 30 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 119.99810 * 2 1 4 4 H 1.48500 * 109.47037 * 270.00046 * 3 2 1 5 5 H 1.48501 * 109.47432 * 29.99839 * 3 2 1 6 6 H 1.48497 * 109.47207 * 150.00267 * 3 2 1 7 7 C 1.37878 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00040 * 173.58281 * 7 2 1 9 9 C 1.50706 * 120.00095 * 353.58561 * 7 2 1 10 10 H 1.08995 * 109.46889 * 334.81365 * 9 7 2 11 11 C 1.50695 * 109.46822 * 214.80686 * 9 7 2 12 12 C 1.38234 * 120.00254 * 301.89514 * 11 9 7 13 13 C 1.38234 * 119.99761 * 179.81141 * 12 11 9 14 14 C 1.38232 * 120.00357 * 0.39898 * 13 12 11 15 15 C 1.38241 * 119.99954 * 359.85337 * 14 13 12 16 16 C 1.38232 * 119.99779 * 359.95826 * 15 14 13 17 17 N 1.46501 * 109.46850 * 94.80718 * 9 7 2 18 18 C 1.35047 * 126.03733 * 35.31180 * 17 9 7 19 19 C 1.35379 * 107.72857 * 179.69455 * 18 17 9 20 20 Cl 1.73600 * 126.04570 * 180.29615 * 19 18 17 21 21 C 1.39929 * 107.90421 * 0.26688 * 19 18 17 22 22 N 1.30849 * 108.21683 * 359.97438 * 21 19 18 23 23 H 0.96996 * 120.00628 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00234 * 359.97438 * 12 11 9 25 25 H 1.08000 * 119.99747 * 180.22546 * 13 12 11 26 26 H 1.08005 * 120.00484 * 179.83644 * 14 13 12 27 27 H 1.07998 * 120.00134 * 179.97438 * 15 14 13 28 28 H 1.07997 * 120.00366 * 179.97438 * 16 15 14 29 29 H 1.08005 * 126.13879 * 359.96395 * 18 17 9 30 30 H 1.07996 * 125.88973 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1970 -0.1040 9 6 1.2581 -2.4951 0.1469 10 1 0.3177 -2.3176 0.6685 11 6 2.0950 -3.4681 0.9367 12 6 3.3554 -3.8176 0.4894 13 6 4.1245 -4.7072 1.2160 14 6 3.6300 -5.2536 2.3855 15 6 2.3675 -4.9081 2.8301 16 6 1.5999 -4.0156 2.1056 17 7 0.9830 -3.0521 -1.1798 18 6 1.7910 -2.9706 -2.2589 19 6 1.1800 -3.6146 -3.2810 20 17 1.8064 -3.8043 -4.8889 21 6 -0.0454 -4.1008 -2.8119 22 7 -0.1655 -3.7616 -1.5538 23 1 -0.4851 0.8400 0.0004 24 1 3.7403 -3.3937 -0.4263 25 1 5.1107 -4.9775 0.8685 26 1 4.2299 -5.9507 2.9519 27 1 1.9809 -5.3353 3.7436 28 1 0.6134 -3.7459 2.4526 29 1 2.7540 -2.4832 -2.2981 30 1 -0.7674 -4.6597 -3.3887 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020862.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:21 Heat of formation + Delta-G solvation = 85.641316 kcal Electronic energy + Delta-G solvation = -16918.413781 eV Core-core repulsion = 14126.808382 eV Total energy + Delta-G solvation = -2791.605399 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26043 -38.54881 -35.72001 -34.36154 -32.01421 -30.43063 -29.77491 -28.84406 -26.74852 -23.82003 -22.06758 -21.22638 -20.08576 -19.72431 -17.01690 -16.53330 -16.01284 -15.11117 -14.52915 -14.21052 -13.91829 -13.62455 -13.23239 -12.93509 -12.67461 -12.40809 -12.13409 -11.93172 -11.34275 -11.21792 -11.12486 -10.71233 -10.68591 -10.53414 -10.06684 -9.86856 -9.52404 -9.07071 -8.47870 -8.38501 -8.19759 -7.45298 -6.57407 -4.74045 1.86820 1.92652 2.84097 2.93679 3.07531 3.14136 3.17041 3.47314 3.82150 4.03314 4.45550 4.91367 5.37527 5.39891 5.51317 5.64179 5.68461 5.83315 6.04583 6.10507 6.35213 6.46603 6.53306 6.54838 6.82722 6.96141 6.99765 7.21565 7.29198 7.39624 7.53657 7.66773 8.12040 8.41371 8.70004 8.98768 10.46927 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.010010 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.377966 B = 2796.551516 C = 4316.639557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.080 3.920 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.290 3.710 10 H 0.097 0.903 11 C -0.057 4.057 12 C -0.104 4.104 13 C -0.127 4.127 14 C -0.138 4.138 15 C -0.125 4.125 16 C -0.113 4.113 17 N -0.305 5.305 18 C 0.096 3.904 19 C -0.218 4.218 20 Cl -0.080 7.080 21 C 0.034 3.966 22 N -0.301 5.301 23 H 0.275 0.725 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.166 0.834 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 -5.855 -0.076 7.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.131 4.131 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.195 3.805 10 H 0.115 0.885 11 C -0.058 4.058 12 C -0.123 4.123 13 C -0.145 4.145 14 C -0.156 4.156 15 C -0.143 4.143 16 C -0.131 4.131 17 N -0.086 5.086 18 C -0.056 4.056 19 C -0.258 4.258 20 Cl -0.053 7.053 21 C -0.151 4.151 22 N -0.123 5.123 23 H 0.085 0.915 24 H 0.135 0.865 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.183 0.817 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.813 -5.754 1.022 6.978 hybrid contribution 0.961 0.990 -0.990 1.699 sum 4.774 -4.764 0.032 6.744 Atomic orbital electron populations 1.69965 1.06446 1.28563 1.43234 1.25231 0.94986 1.00480 0.92403 0.86320 0.80050 0.81486 0.78860 1.19843 1.20503 1.18989 1.21175 0.94019 0.88576 1.52727 0.90845 1.18421 0.97183 0.88298 0.76574 0.88542 1.20466 0.94956 0.94989 0.95394 1.21006 0.94209 0.97254 0.99802 1.21043 0.99476 0.98206 0.95734 1.20956 0.96272 1.01186 0.97234 1.21009 0.94858 0.98759 0.99679 1.21054 0.99762 0.96880 0.95452 1.51131 1.10494 1.36727 1.10244 1.21925 0.98037 0.98455 0.87224 1.20664 0.99701 1.17719 0.87669 1.98235 1.87222 1.97317 1.22485 1.23443 0.96318 1.02174 0.93162 1.77322 1.07860 1.13979 1.13165 0.91545 0.86481 0.86858 0.87004 0.86782 0.86340 0.81661 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.44 12.86 55.43 0.71 -21.73 16 2 C 0.08 1.98 5.45 -17.82 -0.10 1.88 16 3 Si 0.91 19.20 29.54 -169.99 -5.02 14.18 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 7 C -0.53 -12.71 7.34 -34.44 -0.25 -12.97 16 8 H 0.07 1.72 7.27 -52.49 -0.38 1.33 16 9 C 0.29 6.77 3.01 -70.23 -0.21 6.55 16 10 H 0.10 2.52 7.14 -51.93 -0.37 2.15 16 11 C -0.06 -1.17 4.98 -104.62 -0.52 -1.69 16 12 C -0.10 -1.96 8.70 -39.58 -0.34 -2.30 16 13 C -0.13 -2.05 10.05 -39.59 -0.40 -2.44 16 14 C -0.14 -2.11 10.05 -39.58 -0.40 -2.50 16 15 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 16 C -0.11 -2.12 9.67 -39.58 -0.38 -2.50 16 17 N -0.31 -7.02 3.46 -57.09 -0.20 -7.22 16 18 C 0.10 2.03 9.62 -17.16 -0.17 1.87 16 19 C -0.22 -4.33 6.65 -39.97 -0.27 -4.60 16 20 Cl -0.08 -1.36 29.30 -51.86 -1.52 -2.88 16 21 C 0.03 0.68 12.02 -17.34 -0.21 0.47 16 22 N -0.30 -6.94 12.57 30.64 0.39 -6.55 16 23 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 24 H 0.12 2.15 6.92 -52.49 -0.36 1.79 16 25 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 26 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 27 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.12 2.14 7.95 -52.49 -0.42 1.72 16 29 H 0.17 3.23 7.66 -52.48 -0.40 2.83 16 30 H 0.17 2.81 8.06 -52.49 -0.42 2.39 16 LS Contribution 284.12 15.07 4.28 4.28 Total: -1.00 -26.92 284.12 -7.76 -34.69 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -2.76 Total: 5.85 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -3.64 Total: -20.63 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.90 Total: -35.50 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.52 Total: -2.88 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.92 -7.76 -34.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020862.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.328 kcal (2) G-P(sol) polarization free energy of solvation -26.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds