Wall clock time and date at job start Mon Mar 30 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 119.99810 * 2 1 4 4 H 1.48500 * 109.47037 * 270.00046 * 3 2 1 5 5 H 1.48501 * 109.47432 * 29.99839 * 3 2 1 6 6 H 1.48497 * 109.47207 * 150.00267 * 3 2 1 7 7 C 1.37878 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00040 * 173.58281 * 7 2 1 9 9 C 1.50706 * 120.00095 * 353.58561 * 7 2 1 10 10 H 1.08995 * 109.46889 * 334.81365 * 9 7 2 11 11 C 1.50695 * 109.46822 * 214.80686 * 9 7 2 12 12 C 1.38234 * 120.00254 * 301.89514 * 11 9 7 13 13 C 1.38234 * 119.99761 * 179.81141 * 12 11 9 14 14 C 1.38232 * 120.00357 * 0.39898 * 13 12 11 15 15 C 1.38241 * 119.99954 * 359.85337 * 14 13 12 16 16 C 1.38232 * 119.99779 * 359.95826 * 15 14 13 17 17 N 1.46501 * 109.46850 * 94.80718 * 9 7 2 18 18 C 1.35047 * 126.03733 * 35.31180 * 17 9 7 19 19 C 1.35379 * 107.72857 * 179.69455 * 18 17 9 20 20 Cl 1.73600 * 126.04570 * 180.29615 * 19 18 17 21 21 C 1.39929 * 107.90421 * 0.26688 * 19 18 17 22 22 N 1.30849 * 108.21683 * 359.97438 * 21 19 18 23 23 H 0.96996 * 120.00628 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00234 * 359.97438 * 12 11 9 25 25 H 1.08000 * 119.99747 * 180.22546 * 13 12 11 26 26 H 1.08005 * 120.00484 * 179.83644 * 14 13 12 27 27 H 1.07998 * 120.00134 * 179.97438 * 15 14 13 28 28 H 1.07997 * 120.00366 * 179.97438 * 16 15 14 29 29 H 1.08005 * 126.13879 * 359.96395 * 18 17 9 30 30 H 1.07996 * 125.88973 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1970 -0.1040 9 6 1.2581 -2.4951 0.1469 10 1 0.3177 -2.3176 0.6685 11 6 2.0950 -3.4681 0.9367 12 6 3.3554 -3.8176 0.4894 13 6 4.1245 -4.7072 1.2160 14 6 3.6300 -5.2536 2.3855 15 6 2.3675 -4.9081 2.8301 16 6 1.5999 -4.0156 2.1056 17 7 0.9830 -3.0521 -1.1798 18 6 1.7910 -2.9706 -2.2589 19 6 1.1800 -3.6146 -3.2810 20 17 1.8064 -3.8043 -4.8889 21 6 -0.0454 -4.1008 -2.8119 22 7 -0.1655 -3.7616 -1.5538 23 1 -0.4851 0.8400 0.0004 24 1 3.7403 -3.3937 -0.4263 25 1 5.1107 -4.9775 0.8685 26 1 4.2299 -5.9507 2.9519 27 1 1.9809 -5.3353 3.7436 28 1 0.6134 -3.7459 2.4526 29 1 2.7540 -2.4832 -2.2981 30 1 -0.7674 -4.6597 -3.3887 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020862.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:21 Heat of formation + Delta-G solvation = 72.213764 kcal Electronic energy + Delta-G solvation = -16918.996043 eV Core-core repulsion = 14126.808382 eV Total energy + Delta-G solvation = -2792.187661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.91803 -39.93323 -37.20045 -36.06262 -33.75770 -31.78691 -31.29731 -30.46734 -28.49507 -25.52392 -23.43246 -22.71260 -21.71477 -21.35828 -18.81324 -17.99478 -17.64744 -16.65467 -16.10194 -15.69737 -15.44767 -15.18711 -14.86446 -14.30206 -14.22843 -13.93424 -13.68681 -13.52020 -12.95135 -12.87056 -12.58793 -12.26794 -12.21975 -11.95511 -11.65757 -11.55804 -11.19066 -10.93514 -10.18050 -9.73566 -9.59607 -9.07289 -8.43344 -6.66047 0.48838 0.58402 1.18570 1.33277 1.39742 1.42604 1.51216 1.87036 2.17363 2.30019 3.05469 3.07092 4.00728 4.08585 4.12047 4.18856 4.27862 4.35932 4.61796 4.75251 4.81635 4.86067 5.01884 5.17579 5.26616 5.45344 5.61469 5.65081 5.66024 5.76299 5.98185 6.21813 6.42019 6.53883 7.01972 7.10708 8.61699 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.010010 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.377966 B = 2796.551516 C = 4316.639557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.033 3.967 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.532 4.532 8 H 0.078 0.922 9 C 0.298 3.702 10 H 0.053 0.947 11 C -0.085 4.085 12 C -0.119 4.119 13 C -0.124 4.124 14 C -0.129 4.129 15 C -0.121 4.121 16 C -0.136 4.136 17 N -0.319 5.319 18 C 0.086 3.914 19 C -0.218 4.218 20 Cl -0.050 7.050 21 C 0.038 3.962 22 N -0.341 5.341 23 H 0.273 0.727 24 H 0.113 0.887 25 H 0.146 0.854 26 H 0.154 0.846 27 H 0.146 0.854 28 H 0.109 0.891 29 H 0.176 0.824 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -7.105 -0.164 9.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.173 4.173 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.571 4.571 8 H 0.096 0.904 9 C 0.203 3.797 10 H 0.071 0.929 11 C -0.087 4.087 12 C -0.138 4.138 13 C -0.142 4.142 14 C -0.146 4.146 15 C -0.139 4.139 16 C -0.154 4.154 17 N -0.099 5.099 18 C -0.067 4.067 19 C -0.257 4.257 20 Cl -0.022 7.022 21 C -0.146 4.146 22 N -0.163 5.163 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.164 0.836 26 H 0.171 0.829 27 H 0.164 0.836 28 H 0.127 0.873 29 H 0.193 0.807 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.933 -7.015 0.927 9.235 hybrid contribution 0.332 1.213 -1.017 1.617 sum 6.265 -5.802 -0.090 8.540 Atomic orbital electron populations 1.70096 1.08011 1.29027 1.45709 1.26030 0.95537 1.03651 0.92085 0.85374 0.79025 0.77609 0.78774 1.19648 1.20548 1.17991 1.21402 0.94195 0.89183 1.52271 0.90389 1.18111 0.95540 0.89382 0.76711 0.92871 1.20358 0.95846 0.96226 0.96258 1.21064 0.93889 0.98485 1.00334 1.21430 1.00391 0.96770 0.95561 1.21454 0.95912 1.00579 0.96692 1.21370 0.94972 0.97339 1.00179 1.21173 1.00172 0.98337 0.95763 1.50785 1.11025 1.37513 1.10590 1.22214 0.98441 0.98861 0.87134 1.20746 0.99400 1.16737 0.88848 1.98242 1.86832 1.97168 1.19968 1.24020 0.96921 1.01249 0.92412 1.77274 1.08559 1.15503 1.14970 0.91784 0.86900 0.83631 0.82884 0.83646 0.87329 0.80689 0.78001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.44 12.86 21.45 0.28 -49.16 16 2 C 0.03 1.68 5.45 84.65 0.46 2.14 16 3 Si 0.97 40.02 29.54 68.60 2.03 42.05 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.53 -26.51 7.34 25.60 0.19 -26.32 16 8 H 0.08 3.71 7.27 -2.91 -0.02 3.69 16 9 C 0.30 14.60 3.01 43.50 0.13 14.73 16 10 H 0.05 3.01 7.14 -2.39 -0.02 2.99 16 11 C -0.09 -3.62 4.98 -19.87 -0.10 -3.71 16 12 C -0.12 -4.41 8.70 22.27 0.19 -4.22 16 13 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 14 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 15 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 16 C -0.14 -5.18 9.67 22.27 0.22 -4.96 16 17 N -0.32 -15.12 3.46 -334.53 -1.16 -16.28 16 18 C 0.09 3.64 9.62 83.54 0.80 4.44 16 19 C -0.22 -8.47 6.65 22.02 0.15 -8.33 16 20 Cl -0.05 -1.59 29.30 -2.72 -0.08 -1.67 16 21 C 0.04 1.53 12.02 85.25 1.02 2.55 16 22 N -0.34 -16.09 12.57 -56.98 -0.72 -16.81 16 23 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.11 4.14 6.92 -2.91 -0.02 4.12 16 25 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 26 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.11 4.19 7.95 -2.91 -0.02 4.16 16 29 H 0.18 6.88 7.66 -2.91 -0.02 6.85 16 30 H 0.20 6.37 8.06 -2.91 -0.02 6.35 16 Total: -1.00 -60.09 284.12 5.24 -54.86 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 1.15 Total: 20.67 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 3.74 Total: -33.66 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -1.60 Total: -82.25 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -60.09 5.24 -54.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020862.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.069 kcal (2) G-P(sol) polarization free energy of solvation -60.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds