Wall clock time and date at job start Mon Mar 30 2020 06:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99592 * 2 1 4 4 H 1.48506 * 109.47115 * 269.99345 * 3 2 1 5 5 H 1.48493 * 109.47475 * 29.99701 * 3 2 1 6 6 H 1.48502 * 109.47057 * 150.00048 * 3 2 1 7 7 C 1.37874 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00247 * 174.23270 * 7 2 1 9 9 C 1.50700 * 120.00169 * 354.23676 * 7 2 1 10 10 H 1.09000 * 109.46688 * 33.92550 * 9 7 2 11 11 C 1.50698 * 109.47311 * 153.92704 * 9 7 2 12 12 C 1.38237 * 119.99933 * 60.07309 * 11 9 7 13 13 C 1.38239 * 119.99737 * 179.78422 * 12 11 9 14 14 C 1.38228 * 120.00230 * 0.44610 * 13 12 11 15 15 C 1.38238 * 119.99914 * 359.81042 * 14 13 12 16 16 C 1.38236 * 120.00243 * 359.97384 * 15 14 13 17 17 N 1.46498 * 109.46961 * 273.93006 * 9 7 2 18 18 C 1.35042 * 126.03801 * 325.06089 * 17 9 7 19 19 C 1.35368 * 107.72734 * 179.97438 * 18 17 9 20 20 Cl 1.73608 * 126.04622 * 179.97438 * 19 18 17 21 21 C 1.39927 * 107.91242 * 0.02562 * 19 18 17 22 22 N 1.30849 * 108.21168 * 359.97438 * 21 19 18 23 23 H 0.97001 * 120.00558 * 0.02562 * 1 2 3 24 24 H 1.07995 * 119.99796 * 0.02562 * 12 11 9 25 25 H 1.07994 * 119.99622 * 180.27418 * 13 12 11 26 26 H 1.08001 * 120.00418 * 179.83166 * 14 13 12 27 27 H 1.08002 * 120.00181 * 180.02562 * 15 14 13 28 28 H 1.08002 * 120.00496 * 180.02562 * 16 15 14 29 29 H 1.07994 * 126.13594 * 0.23353 * 18 17 9 30 30 H 1.07998 * 125.89575 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0804 -1.1964 -0.0934 9 6 1.2569 -2.4958 0.1322 10 1 0.2901 -2.4113 -0.3641 11 6 2.0558 -3.6010 -0.5090 12 6 3.3235 -3.8969 -0.0439 13 6 4.0546 -4.9138 -0.6292 14 6 3.5218 -5.6285 -1.6855 15 6 2.2562 -5.3291 -2.1541 16 6 1.5232 -4.3153 -1.5660 17 7 1.0527 -2.8003 1.5505 18 6 1.9116 -2.5216 2.5546 19 6 1.3546 -2.9612 3.7074 20 17 2.0564 -2.8436 5.2910 21 6 0.1136 -3.5281 3.3970 22 7 -0.0682 -3.4319 2.1048 23 1 -0.4851 0.8400 -0.0004 24 1 3.7411 -3.3363 0.7793 25 1 5.0432 -5.1478 -0.2629 26 1 4.0940 -6.4211 -2.1446 27 1 1.8396 -5.8878 -2.9792 28 1 0.5343 -4.0816 -1.9318 29 1 2.8691 -2.0319 2.4562 30 1 -0.5758 -3.9683 4.1023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:23 Heat of formation + Delta-G solvation = 85.649404 kcal Electronic energy + Delta-G solvation = -16942.905504 eV Core-core repulsion = 14151.300456 eV Total energy + Delta-G solvation = -2791.605048 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26294 -38.55191 -35.71934 -34.36109 -32.00720 -30.43463 -29.77170 -28.84393 -26.74871 -23.81820 -22.06760 -21.22642 -20.07385 -19.72591 -17.06748 -16.52222 -15.96856 -15.11516 -14.53151 -14.21289 -13.91957 -13.62412 -13.23274 -12.93165 -12.67193 -12.39677 -12.14425 -11.87763 -11.34536 -11.22726 -11.13767 -10.71629 -10.68247 -10.52401 -10.06738 -9.92064 -9.55293 -9.02033 -8.48587 -8.38908 -8.18915 -7.45456 -6.57736 -4.73507 1.86772 1.92181 2.83335 2.93982 3.07783 3.14819 3.17075 3.47259 3.82425 4.03047 4.44470 4.93372 5.37128 5.39732 5.50734 5.64935 5.68508 5.82230 6.04462 6.09748 6.36169 6.46810 6.52949 6.54468 6.83830 6.95837 6.99098 7.21216 7.30946 7.39755 7.53238 7.66679 8.12223 8.42347 8.70277 8.99208 10.47009 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.010105 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.516928 B = 2770.212795 C = 4254.626362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.081 3.919 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.290 3.710 10 H 0.095 0.905 11 C -0.057 4.057 12 C -0.105 4.105 13 C -0.126 4.126 14 C -0.138 4.138 15 C -0.125 4.125 16 C -0.112 4.112 17 N -0.305 5.305 18 C 0.096 3.904 19 C -0.219 4.219 20 Cl -0.080 7.080 21 C 0.034 3.966 22 N -0.301 5.301 23 H 0.275 0.725 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.167 0.833 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 -5.755 1.007 7.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.093 0.907 9 C 0.196 3.804 10 H 0.113 0.887 11 C -0.058 4.058 12 C -0.124 4.124 13 C -0.145 4.145 14 C -0.156 4.156 15 C -0.143 4.143 16 C -0.131 4.131 17 N -0.086 5.086 18 C -0.056 4.056 19 C -0.258 4.258 20 Cl -0.053 7.053 21 C -0.151 4.151 22 N -0.123 5.123 23 H 0.085 0.915 24 H 0.136 0.864 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.184 0.816 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.764 -5.862 -0.028 6.966 hybrid contribution 1.011 1.176 0.912 1.799 sum 4.776 -4.686 0.884 6.749 Atomic orbital electron populations 1.69941 1.06469 1.28577 1.43081 1.25224 0.94965 1.00427 0.92351 0.86356 0.80111 0.81666 0.78791 1.19845 1.20550 1.18964 1.21178 0.94268 0.88697 1.52564 0.90744 1.18362 0.98124 0.90147 0.73764 0.88696 1.20449 0.94724 0.95203 0.95458 1.21018 0.94353 0.97040 0.99967 1.21043 0.99562 0.96780 0.97067 1.20956 0.96127 1.00516 0.98034 1.21012 0.95002 0.98203 1.00095 1.21053 0.99858 0.95492 0.96663 1.51129 1.10232 1.39018 1.08193 1.21934 0.97637 0.98921 0.87150 1.20663 0.99168 1.19930 0.86022 1.98235 1.84284 1.98001 1.24759 1.23444 0.95828 1.02082 0.93738 1.77318 1.09268 1.17543 1.08154 0.91537 0.86447 0.86856 0.86998 0.86766 0.86289 0.81612 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.42 12.90 55.43 0.72 -21.70 16 2 C 0.08 2.02 5.45 -17.82 -0.10 1.92 16 3 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.53 -12.76 7.38 -34.44 -0.25 -13.02 16 8 H 0.07 1.75 7.43 -52.49 -0.39 1.36 16 9 C 0.29 6.78 2.96 -70.24 -0.21 6.57 16 10 H 0.10 2.48 7.23 -51.93 -0.38 2.11 16 11 C -0.06 -1.18 4.97 -104.62 -0.52 -1.70 16 12 C -0.11 -1.98 8.68 -39.58 -0.34 -2.32 16 13 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 14 C -0.14 -2.10 10.05 -39.58 -0.40 -2.50 16 15 C -0.13 -2.00 10.05 -39.58 -0.40 -2.39 16 16 C -0.11 -2.10 9.67 -39.58 -0.38 -2.48 16 17 N -0.30 -7.01 3.45 -57.10 -0.20 -7.20 16 18 C 0.10 2.03 9.52 -17.16 -0.16 1.87 16 19 C -0.22 -4.35 6.65 -39.97 -0.27 -4.61 16 20 Cl -0.08 -1.36 29.30 -51.86 -1.52 -2.88 16 21 C 0.03 0.68 12.02 -17.34 -0.21 0.48 16 22 N -0.30 -6.93 12.57 30.64 0.39 -6.54 16 23 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 24 H 0.12 2.17 7.02 -52.49 -0.37 1.80 16 25 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 26 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 27 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 28 H 0.12 2.14 7.95 -52.49 -0.42 1.72 16 29 H 0.17 3.27 7.66 -52.49 -0.40 2.87 16 30 H 0.17 2.81 8.06 -52.49 -0.42 2.39 16 LS Contribution 284.36 15.07 4.29 4.29 Total: -1.00 -26.83 284.36 -7.77 -34.60 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -2.78 Total: 5.82 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -3.64 Total: -20.62 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.90 Total: -35.45 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.52 Total: -2.88 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.83 -7.77 -34.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.251 kcal (2) G-P(sol) polarization free energy of solvation -26.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds