Wall clock time and date at job start Mon Mar 30 2020 06:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99592 * 2 1 4 4 H 1.48506 * 109.47115 * 269.99345 * 3 2 1 5 5 H 1.48493 * 109.47475 * 29.99701 * 3 2 1 6 6 H 1.48502 * 109.47057 * 150.00048 * 3 2 1 7 7 C 1.37874 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00247 * 174.23270 * 7 2 1 9 9 C 1.50700 * 120.00169 * 354.23676 * 7 2 1 10 10 H 1.09000 * 109.46688 * 33.92550 * 9 7 2 11 11 C 1.50698 * 109.47311 * 153.92704 * 9 7 2 12 12 C 1.38237 * 119.99933 * 60.07309 * 11 9 7 13 13 C 1.38239 * 119.99737 * 179.78422 * 12 11 9 14 14 C 1.38228 * 120.00230 * 0.44610 * 13 12 11 15 15 C 1.38238 * 119.99914 * 359.81042 * 14 13 12 16 16 C 1.38236 * 120.00243 * 359.97384 * 15 14 13 17 17 N 1.46498 * 109.46961 * 273.93006 * 9 7 2 18 18 C 1.35042 * 126.03801 * 325.06089 * 17 9 7 19 19 C 1.35368 * 107.72734 * 179.97438 * 18 17 9 20 20 Cl 1.73608 * 126.04622 * 179.97438 * 19 18 17 21 21 C 1.39927 * 107.91242 * 0.02562 * 19 18 17 22 22 N 1.30849 * 108.21168 * 359.97438 * 21 19 18 23 23 H 0.97001 * 120.00558 * 0.02562 * 1 2 3 24 24 H 1.07995 * 119.99796 * 0.02562 * 12 11 9 25 25 H 1.07994 * 119.99622 * 180.27418 * 13 12 11 26 26 H 1.08001 * 120.00418 * 179.83166 * 14 13 12 27 27 H 1.08002 * 120.00181 * 180.02562 * 15 14 13 28 28 H 1.08002 * 120.00496 * 180.02562 * 16 15 14 29 29 H 1.07994 * 126.13594 * 0.23353 * 18 17 9 30 30 H 1.07998 * 125.89575 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0804 -1.1964 -0.0934 9 6 1.2569 -2.4958 0.1322 10 1 0.2901 -2.4113 -0.3641 11 6 2.0558 -3.6010 -0.5090 12 6 3.3235 -3.8969 -0.0439 13 6 4.0546 -4.9138 -0.6292 14 6 3.5218 -5.6285 -1.6855 15 6 2.2562 -5.3291 -2.1541 16 6 1.5232 -4.3153 -1.5660 17 7 1.0527 -2.8003 1.5505 18 6 1.9116 -2.5216 2.5546 19 6 1.3546 -2.9612 3.7074 20 17 2.0564 -2.8436 5.2910 21 6 0.1136 -3.5281 3.3970 22 7 -0.0682 -3.4319 2.1048 23 1 -0.4851 0.8400 -0.0004 24 1 3.7411 -3.3363 0.7793 25 1 5.0432 -5.1478 -0.2629 26 1 4.0940 -6.4211 -2.1446 27 1 1.8396 -5.8878 -2.9792 28 1 0.5343 -4.0816 -1.9318 29 1 2.8691 -2.0319 2.4562 30 1 -0.5758 -3.9683 4.1023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:23 Heat of formation + Delta-G solvation = 72.319676 kcal Electronic energy + Delta-G solvation = -16943.483524 eV Core-core repulsion = 14151.300456 eV Total energy + Delta-G solvation = -2792.183068 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.92159 -39.93433 -37.20150 -36.06455 -33.75189 -31.79008 -31.29362 -30.46828 -28.49650 -25.52471 -23.42838 -22.71365 -21.70373 -21.35893 -18.86418 -17.97192 -17.62201 -16.65706 -16.10527 -15.69613 -15.45027 -15.18854 -14.87281 -14.28631 -14.22658 -13.92448 -13.66351 -13.51338 -12.96829 -12.87774 -12.59407 -12.28479 -12.22204 -11.94267 -11.67221 -11.61057 -11.20534 -10.88418 -10.18760 -9.73707 -9.59014 -9.07485 -8.44122 -6.65938 0.49197 0.58160 1.17632 1.32643 1.39542 1.42937 1.49976 1.86907 2.17090 2.29082 3.04804 3.08281 4.01111 4.08688 4.12234 4.18003 4.27228 4.35608 4.62630 4.74994 4.81718 4.86219 5.03167 5.17190 5.26746 5.45431 5.61528 5.64965 5.65848 5.76769 5.97580 6.21582 6.41602 6.54677 7.02264 7.10635 8.61143 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.010105 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.516928 B = 2770.212795 C = 4254.626362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.036 3.964 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.533 4.533 8 H 0.078 0.922 9 C 0.299 3.701 10 H 0.051 0.949 11 C -0.086 4.086 12 C -0.120 4.120 13 C -0.124 4.124 14 C -0.128 4.128 15 C -0.121 4.121 16 C -0.135 4.135 17 N -0.318 5.318 18 C 0.086 3.914 19 C -0.218 4.218 20 Cl -0.050 7.050 21 C 0.039 3.961 22 N -0.340 5.340 23 H 0.273 0.727 24 H 0.113 0.887 25 H 0.146 0.854 26 H 0.154 0.846 27 H 0.146 0.854 28 H 0.109 0.891 29 H 0.176 0.824 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -6.995 1.332 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.170 4.170 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.572 4.572 8 H 0.096 0.904 9 C 0.203 3.797 10 H 0.069 0.931 11 C -0.087 4.087 12 C -0.139 4.139 13 C -0.141 4.141 14 C -0.146 4.146 15 C -0.138 4.138 16 C -0.154 4.154 17 N -0.098 5.098 18 C -0.066 4.066 19 C -0.258 4.258 20 Cl -0.022 7.022 21 C -0.146 4.146 22 N -0.162 5.162 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.163 0.837 26 H 0.171 0.829 27 H 0.164 0.836 28 H 0.128 0.872 29 H 0.193 0.807 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.887 -7.111 0.303 9.237 hybrid contribution 0.383 1.411 0.874 1.704 sum 6.270 -5.700 1.177 8.555 Atomic orbital electron populations 1.70074 1.08019 1.28996 1.45549 1.26001 0.95491 1.03532 0.92024 0.85443 0.79110 0.77759 0.78932 1.19271 1.20997 1.17825 1.21387 0.94399 0.89299 1.52109 0.90379 1.18021 0.96297 0.91463 0.73875 0.93073 1.20343 0.95710 0.95836 0.96834 1.21069 0.93981 0.98363 1.00467 1.21426 1.00541 0.95413 0.96769 1.21453 0.95684 1.00512 0.96969 1.21374 0.95200 0.96961 1.00307 1.21174 1.00211 0.96911 0.97063 1.50752 1.10787 1.39916 1.08360 1.22205 0.97933 0.99192 0.87281 1.20743 0.98964 1.18935 0.87113 1.98242 1.83808 1.97885 1.22301 1.24019 0.96355 1.00949 0.93263 1.77272 1.10002 1.19157 1.09798 0.91814 0.86931 0.83657 0.82878 0.83615 0.87249 0.80725 0.78003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.34 12.90 21.45 0.28 -49.06 16 2 C 0.04 1.83 5.45 84.65 0.46 2.29 16 3 Si 0.96 40.03 29.54 68.60 2.03 42.06 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.53 -26.58 7.38 25.60 0.19 -26.39 16 8 H 0.08 3.73 7.43 -2.91 -0.02 3.71 16 9 C 0.30 14.63 2.96 43.50 0.13 14.76 16 10 H 0.05 2.89 7.23 -2.39 -0.02 2.88 16 11 C -0.09 -3.63 4.97 -19.86 -0.10 -3.73 16 12 C -0.12 -4.45 8.68 22.27 0.19 -4.26 16 13 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 14 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 15 C -0.12 -3.58 10.05 22.27 0.22 -3.36 16 16 C -0.13 -5.13 9.67 22.27 0.22 -4.92 16 17 N -0.32 -15.04 3.45 -334.55 -1.15 -16.20 16 18 C 0.09 3.66 9.52 83.54 0.80 4.45 16 19 C -0.22 -8.48 6.65 22.02 0.15 -8.34 16 20 Cl -0.05 -1.60 29.30 -2.72 -0.08 -1.68 16 21 C 0.04 1.53 12.02 85.25 1.02 2.56 16 22 N -0.34 -16.03 12.57 -56.98 -0.72 -16.74 16 23 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 24 H 0.11 4.15 7.02 -2.91 -0.02 4.13 16 25 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 26 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 28 H 0.11 4.20 7.95 -2.91 -0.02 4.18 16 29 H 0.18 6.91 7.66 -2.91 -0.02 6.88 16 30 H 0.20 6.37 8.06 -2.91 -0.02 6.34 16 Total: -1.00 -59.86 284.36 5.23 -54.63 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 1.15 Total: 20.53 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 3.73 Total: -33.53 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -1.59 Total: -82.00 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -59.86 5.23 -54.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.947 kcal (2) G-P(sol) polarization free energy of solvation -59.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds