Wall clock time and date at job start Mon Mar 30 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86807 * 119.99910 * 2 1 4 4 H 1.48501 * 109.47019 * 274.97925 * 3 2 1 5 5 H 1.48502 * 109.47048 * 34.98031 * 3 2 1 6 6 H 1.48499 * 109.47209 * 154.97624 * 3 2 1 7 7 C 1.39974 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00154 * 185.99248 * 7 2 1 9 9 C 1.41743 * 119.99586 * 5.99655 * 7 2 1 10 10 N 1.31860 * 126.58735 * 354.31099 * 9 7 2 11 11 O 1.21276 * 109.90007 * 180.02562 * 10 9 7 12 12 C 1.33795 * 110.33464 * 0.02562 * 11 10 9 13 13 C 1.50698 * 126.28783 * 179.97438 * 12 11 10 14 14 S 1.81403 * 109.47098 * 270.02103 * 13 12 11 15 15 C 1.76196 * 102.99963 * 179.97438 * 14 13 12 16 16 C 1.38975 * 120.08087 * 359.73292 * 15 14 13 17 17 C 1.38089 * 119.91770 * 179.76409 * 16 15 14 18 18 C 1.38302 * 120.08129 * 0.48450 * 17 16 15 19 19 C 1.38301 * 120.15813 * 359.76400 * 18 17 16 20 20 C 1.38085 * 120.08609 * 0.02562 * 19 18 17 21 21 N 1.30751 * 107.42595 * 0.25688 * 12 11 10 22 22 H 0.97004 * 120.00338 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47126 * 30.02003 * 13 12 11 24 24 H 1.08997 * 109.47298 * 150.02288 * 13 12 11 25 25 H 1.07996 * 120.03964 * 359.97438 * 16 15 14 26 26 H 1.07995 * 119.95582 * 180.22501 * 17 16 15 27 27 H 1.07995 * 119.92034 * 179.74423 * 18 17 16 28 28 H 1.08007 * 119.96146 * 179.97438 * 19 18 17 29 29 H 1.07998 * 120.04231 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3837 2.1072 -1.3948 5 1 1.4954 2.6201 0.8027 6 1 3.5876 1.4122 0.5922 7 6 2.0074 -1.2122 0.0005 8 1 3.0829 -1.2146 0.0982 9 6 1.3045 -2.4364 -0.1272 10 7 -0.0047 -2.5924 -0.1488 11 8 -0.2784 -3.7678 -0.2691 12 6 0.8389 -4.5007 -0.3378 13 6 0.9154 -5.9981 -0.4885 14 16 0.9375 -6.7706 1.1527 15 6 1.0267 -8.4904 0.7801 16 6 1.0553 -8.9160 -0.5425 17 6 1.1301 -10.2644 -0.8307 18 6 1.1664 -11.1915 0.1950 19 6 1.1329 -10.7719 1.5124 20 6 1.0625 -9.4249 1.8082 21 7 1.8521 -3.6796 -0.2441 22 1 -0.4851 0.8400 -0.0004 23 1 0.0476 -6.3521 -1.0450 24 1 1.8252 -6.2631 -1.0270 25 1 1.0225 -8.1929 -1.3440 26 1 1.1561 -10.5957 -1.8582 27 1 1.2207 -12.2456 -0.0334 28 1 1.1610 -11.4986 2.3109 29 1 1.0359 -9.0980 2.8372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073641475.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:21 Heat of formation + Delta-G solvation = 82.708016 kcal Electronic energy + Delta-G solvation = -15856.397809 eV Core-core repulsion = 13066.708919 eV Total energy + Delta-G solvation = -2789.688890 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.36871 -38.99062 -34.51572 -33.49491 -31.90976 -31.08321 -30.98206 -27.87895 -26.51762 -22.90395 -22.68483 -21.93175 -20.87804 -18.14450 -17.18122 -16.64783 -16.09729 -15.77488 -15.15510 -14.77790 -14.60902 -14.22987 -13.79387 -13.55469 -13.24668 -13.04556 -12.75655 -11.68454 -11.41672 -11.36658 -11.29006 -10.96200 -10.47661 -10.35384 -10.22671 -10.14346 -9.82175 -9.30434 -9.19756 -9.11492 -8.19114 -7.36019 -6.68432 -4.69575 1.10724 1.24200 1.25511 2.36545 2.95546 3.07253 3.09857 3.15423 3.59560 3.94140 3.99223 4.00116 4.71898 4.79694 4.80153 4.95875 5.22921 5.25762 5.33330 5.38548 5.60746 5.72884 5.84790 6.16308 6.24142 6.36038 6.50978 6.74302 6.77259 7.21034 7.60126 8.25472 8.42939 8.79090 10.22158 10.35069 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.063881 B = 0.003650 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.208813 B = 7669.555398 C = 7711.106719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.070 3.930 3 Si 0.926 3.074 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.432 4.432 8 H 0.094 0.906 9 C 0.289 3.711 10 N -0.415 5.415 11 O 0.028 5.972 12 C 0.118 3.882 13 C -0.001 4.001 14 S -0.075 6.075 15 C -0.082 4.082 16 C -0.137 4.137 17 C -0.099 4.099 18 C -0.133 4.133 19 C -0.102 4.102 20 C -0.103 4.103 21 N -0.497 5.497 22 H 0.279 0.721 23 H 0.111 0.889 24 H 0.117 0.883 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 -17.333 -0.223 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.152 4.152 3 Si 0.750 3.250 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.112 0.888 9 C 0.038 3.962 10 N -0.142 5.142 11 O -0.015 6.015 12 C -0.105 4.105 13 C -0.150 4.150 14 S 0.169 5.831 15 C -0.196 4.196 16 C -0.161 4.161 17 C -0.119 4.119 18 C -0.154 4.154 19 C -0.122 4.122 20 C -0.127 4.127 21 N -0.240 5.240 22 H 0.090 0.910 23 H 0.129 0.871 24 H 0.135 0.865 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.662 -15.846 0.894 15.885 hybrid contribution 0.375 0.003 -1.281 1.335 sum 1.037 -15.842 -0.387 15.881 Atomic orbital electron populations 1.69869 1.07235 1.28907 1.33968 1.25866 0.94988 1.01238 0.93092 0.86015 0.80164 0.79893 0.78961 1.19487 1.20152 1.18414 1.18439 0.94760 0.86230 1.47888 0.88827 1.22459 0.85864 0.91568 0.96329 1.75602 1.16178 0.90340 1.32059 1.85242 1.34124 1.14501 1.67617 1.26713 0.84612 0.95114 1.04051 1.21578 1.07409 0.88059 0.97960 1.86152 1.91113 0.94943 1.10898 1.22007 1.03349 0.97736 0.96475 1.21236 1.03128 0.96886 0.94868 1.21053 0.98883 0.92617 0.99344 1.21141 1.01866 0.99504 0.92882 1.21070 0.99230 0.95127 0.96737 1.20766 1.01359 0.92249 0.98297 1.72195 1.29123 1.01124 1.21578 0.91034 0.87114 0.86465 0.85673 0.85807 0.86038 0.85691 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.78 12.01 55.55 0.67 -21.11 15 2 C 0.07 1.87 5.49 -17.37 -0.10 1.77 15 3 Si 0.93 19.60 29.56 -169.99 -5.03 14.57 15 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 15 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 15 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 7 C -0.43 -12.35 9.51 -37.59 -0.36 -12.70 15 8 H 0.09 2.54 7.85 -52.49 -0.41 2.13 15 9 C 0.29 8.44 7.70 -157.00 -1.21 7.23 15 10 N -0.41 -12.17 10.51 30.27 0.32 -11.85 15 11 O 0.03 0.72 11.28 17.72 0.20 0.92 15 12 C 0.12 2.66 7.73 -12.92 -0.10 2.56 15 13 C 0.00 -0.01 4.96 36.00 0.18 0.17 15 14 S -0.08 -1.19 21.91 -107.50 -2.35 -3.54 15 15 C -0.08 -1.07 6.11 -39.03 -0.24 -1.31 15 16 C -0.14 -1.57 9.36 -39.36 -0.37 -1.94 15 17 C -0.10 -0.96 10.04 -39.61 -0.40 -1.36 15 18 C -0.13 -1.20 10.04 -39.53 -0.40 -1.60 15 19 C -0.10 -0.97 10.04 -39.61 -0.40 -1.37 15 20 C -0.10 -1.18 9.79 -39.36 -0.39 -1.57 15 21 N -0.50 -12.98 11.62 -10.83 -0.13 -13.11 15 22 H 0.28 7.11 8.29 -40.82 -0.34 6.77 15 23 H 0.11 1.46 7.74 -51.92 -0.40 1.06 15 24 H 0.12 1.67 7.76 -51.93 -0.40 1.27 15 25 H 0.13 1.29 5.88 -52.49 -0.31 0.98 15 26 H 0.12 0.91 8.06 -52.49 -0.42 0.49 15 27 H 0.12 0.80 8.06 -52.49 -0.42 0.37 15 28 H 0.13 0.87 8.06 -52.48 -0.42 0.45 15 29 H 0.13 1.35 8.06 -52.49 -0.42 0.92 15 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -32.81 278.74 -8.24 -41.05 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -2.35 Total: -0.99 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -3.77 Total: -10.13 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.86 Total: -46.07 kcal Atomic # 8 Polarization: 0.72 SS G_CDS: 0.20 Total: 0.92 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -2.35 Total: -3.54 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.81 -8.24 -41.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641475.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.754 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds