Wall clock time and date at job start Mon Mar 30 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86807 * 119.99910 * 2 1 4 4 H 1.48501 * 109.47019 * 274.97925 * 3 2 1 5 5 H 1.48502 * 109.47048 * 34.98031 * 3 2 1 6 6 H 1.48499 * 109.47209 * 154.97624 * 3 2 1 7 7 C 1.39974 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00154 * 185.99248 * 7 2 1 9 9 C 1.41743 * 119.99586 * 5.99655 * 7 2 1 10 10 N 1.31860 * 126.58735 * 354.31099 * 9 7 2 11 11 O 1.21276 * 109.90007 * 180.02562 * 10 9 7 12 12 C 1.33795 * 110.33464 * 0.02562 * 11 10 9 13 13 C 1.50698 * 126.28783 * 179.97438 * 12 11 10 14 14 S 1.81403 * 109.47098 * 270.02103 * 13 12 11 15 15 C 1.76196 * 102.99963 * 179.97438 * 14 13 12 16 16 C 1.38975 * 120.08087 * 359.73292 * 15 14 13 17 17 C 1.38089 * 119.91770 * 179.76409 * 16 15 14 18 18 C 1.38302 * 120.08129 * 0.48450 * 17 16 15 19 19 C 1.38301 * 120.15813 * 359.76400 * 18 17 16 20 20 C 1.38085 * 120.08609 * 0.02562 * 19 18 17 21 21 N 1.30751 * 107.42595 * 0.25688 * 12 11 10 22 22 H 0.97004 * 120.00338 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47126 * 30.02003 * 13 12 11 24 24 H 1.08997 * 109.47298 * 150.02288 * 13 12 11 25 25 H 1.07996 * 120.03964 * 359.97438 * 16 15 14 26 26 H 1.07995 * 119.95582 * 180.22501 * 17 16 15 27 27 H 1.07995 * 119.92034 * 179.74423 * 18 17 16 28 28 H 1.08007 * 119.96146 * 179.97438 * 19 18 17 29 29 H 1.07998 * 120.04231 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3837 2.1072 -1.3948 5 1 1.4954 2.6201 0.8027 6 1 3.5876 1.4122 0.5922 7 6 2.0074 -1.2122 0.0005 8 1 3.0829 -1.2146 0.0982 9 6 1.3045 -2.4364 -0.1272 10 7 -0.0047 -2.5924 -0.1488 11 8 -0.2784 -3.7678 -0.2691 12 6 0.8389 -4.5007 -0.3378 13 6 0.9154 -5.9981 -0.4885 14 16 0.9375 -6.7706 1.1527 15 6 1.0267 -8.4904 0.7801 16 6 1.0553 -8.9160 -0.5425 17 6 1.1301 -10.2644 -0.8307 18 6 1.1664 -11.1915 0.1950 19 6 1.1329 -10.7719 1.5124 20 6 1.0625 -9.4249 1.8082 21 7 1.8521 -3.6796 -0.2441 22 1 -0.4851 0.8400 -0.0004 23 1 0.0476 -6.3521 -1.0450 24 1 1.8252 -6.2631 -1.0270 25 1 1.0225 -8.1929 -1.3440 26 1 1.1561 -10.5957 -1.8582 27 1 1.2207 -12.2456 -0.0334 28 1 1.1610 -11.4986 2.3109 29 1 1.0359 -9.0980 2.8372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073641475.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:21 Heat of formation + Delta-G solvation = 61.253508 kcal Electronic energy + Delta-G solvation = -15857.328146 eV Core-core repulsion = 13066.708919 eV Total energy + Delta-G solvation = -2790.619227 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.41266 -39.78870 -36.55045 -35.42499 -33.64136 -32.02253 -31.82955 -29.58091 -28.60917 -24.05159 -23.77527 -23.51896 -22.67537 -19.61028 -18.63695 -18.44726 -17.80834 -17.19877 -16.58676 -16.06631 -15.72845 -15.58736 -15.19818 -14.76162 -14.42309 -14.18348 -13.83915 -13.27826 -13.20675 -12.98023 -12.63403 -12.37231 -12.23586 -12.04343 -11.97058 -11.41857 -11.26489 -11.14342 -10.71985 -10.22978 -9.90559 -8.69432 -8.49387 -6.85115 -0.07439 0.28089 0.45199 1.08920 1.27789 1.36793 1.41785 1.55128 2.00671 2.18118 2.34327 2.80666 3.14559 3.26601 3.93964 4.00548 4.05745 4.15797 4.28922 4.44800 4.54639 4.59338 4.81808 4.90631 5.10533 5.16840 5.34806 5.48935 5.59445 5.59917 6.02495 6.12205 6.35499 6.69809 8.22761 8.35871 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.063881 B = 0.003650 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.208813 B = 7669.555398 C = 7711.106719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.022 3.978 3 Si 1.012 2.988 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.252 1.252 7 C -0.467 4.467 8 H 0.096 0.904 9 C 0.260 3.740 10 N -0.455 5.455 11 O 0.018 5.982 12 C 0.144 3.856 13 C 0.007 3.993 14 S -0.122 6.122 15 C -0.096 4.096 16 C -0.147 4.147 17 C -0.102 4.102 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.116 4.116 21 N -0.524 5.524 22 H 0.288 0.712 23 H 0.142 0.858 24 H 0.138 0.862 25 H 0.133 0.867 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -19.087 -0.829 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.195 4.195 3 Si 0.830 3.170 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.175 1.175 7 C -0.507 4.507 8 H 0.114 0.886 9 C 0.009 3.991 10 N -0.184 5.184 11 O -0.023 6.023 12 C -0.079 4.079 13 C -0.142 4.142 14 S 0.120 5.880 15 C -0.209 4.209 16 C -0.171 4.171 17 C -0.122 4.122 18 C -0.146 4.146 19 C -0.122 4.122 20 C -0.140 4.140 21 N -0.266 5.266 22 H 0.098 0.902 23 H 0.160 0.840 24 H 0.156 0.844 25 H 0.151 0.849 26 H 0.168 0.832 27 H 0.171 0.829 28 H 0.170 0.830 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.382 -17.659 0.281 17.715 hybrid contribution 0.131 0.235 -1.085 1.118 sum 1.513 -17.424 -0.804 17.508 Atomic orbital electron populations 1.69967 1.09207 1.30621 1.34121 1.27039 0.95889 1.05082 0.91539 0.84767 0.78678 0.74018 0.79568 1.18330 1.18848 1.17524 1.18881 0.95204 0.87324 1.49316 0.88583 1.22951 0.86418 0.92927 0.96846 1.75566 1.16607 0.92022 1.34237 1.85143 1.34897 1.13966 1.68245 1.27744 0.82924 0.97342 0.99902 1.21806 1.09939 0.83526 0.98924 1.86234 1.92366 0.98610 1.10766 1.21885 1.06135 0.95111 0.97761 1.21457 1.03165 0.98207 0.94289 1.21425 0.97890 0.91806 1.01071 1.21600 0.99555 1.01111 0.92357 1.21422 0.98122 0.94517 0.98110 1.20963 1.01744 0.93144 0.98177 1.72167 1.30178 1.00745 1.23520 0.90154 0.83958 0.84422 0.84940 0.83162 0.82870 0.82969 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.82 12.01 21.83 0.26 -46.55 15 2 C 0.02 1.21 5.49 85.28 0.47 1.67 15 3 Si 1.01 40.18 29.56 68.60 2.03 42.21 15 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 5 H -0.26 -9.88 7.11 99.48 0.71 -9.18 15 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 7 C -0.47 -27.48 9.51 23.56 0.22 -27.26 15 8 H 0.10 5.37 7.85 -2.91 -0.02 5.35 15 9 C 0.26 15.75 7.70 134.76 1.04 16.79 15 10 N -0.45 -27.73 10.51 -60.22 -0.63 -28.36 15 11 O 0.02 0.97 11.28 73.47 0.83 1.80 15 12 C 0.14 6.60 7.73 88.33 0.68 7.28 15 13 C 0.01 0.22 4.96 71.24 0.35 0.57 15 14 S -0.12 -3.88 21.91 -56.49 -1.24 -5.11 15 15 C -0.10 -2.39 6.11 22.62 0.14 -2.26 15 16 C -0.15 -3.06 9.36 22.41 0.21 -2.85 15 17 C -0.10 -1.63 10.04 22.25 0.22 -1.41 15 18 C -0.13 -1.78 10.04 22.30 0.22 -1.55 15 19 C -0.10 -1.63 10.04 22.25 0.22 -1.41 15 20 C -0.12 -2.52 9.79 22.41 0.22 -2.31 15 21 N -0.52 -28.19 11.62 -304.65 -3.54 -31.73 15 22 H 0.29 14.89 8.29 -92.71 -0.77 14.13 15 23 H 0.14 3.53 7.74 -2.39 -0.02 3.52 15 24 H 0.14 3.76 7.76 -2.39 -0.02 3.74 15 25 H 0.13 2.44 5.88 -2.91 -0.02 2.42 15 26 H 0.15 1.57 8.06 -2.91 -0.02 1.55 15 27 H 0.15 1.21 8.06 -2.91 -0.02 1.19 15 28 H 0.15 1.56 8.06 -2.91 -0.02 1.54 15 29 H 0.13 2.64 8.06 -2.91 -0.02 2.62 15 Total: -1.00 -74.44 278.74 2.89 -71.55 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.18 Total: 8.93 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.00 Total: -12.73 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -3.91 Total: -106.65 kcal Atomic # 8 Polarization: 0.97 SS G_CDS: 0.83 Total: 1.80 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -1.24 Total: -5.11 kcal Total: -74.44 2.89 -71.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641475.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.802 kcal (2) G-P(sol) polarization free energy of solvation -74.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds