Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86802 * 120.00043 * 2 1 4 4 H 1.48492 * 109.47322 * 240.00265 * 3 2 1 5 5 H 1.48501 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46814 * 119.99931 * 3 2 1 7 7 C 1.40180 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99613 * 179.97438 * 7 2 1 9 9 C 1.39542 * 120.00231 * 359.97438 * 7 2 1 10 10 N 1.32966 * 126.36537 * 359.96933 * 9 7 2 11 11 N 1.28682 * 109.16833 * 180.02562 * 10 9 7 12 12 C 1.32272 * 109.45953 * 0.02562 * 11 10 9 13 13 S 1.76193 * 126.16441 * 180.02562 * 12 11 10 14 14 C 1.81002 * 100.00049 * 0.02562 * 13 12 11 15 15 C 1.50701 * 109.47156 * 180.02562 * 14 13 12 16 16 C 1.38233 * 120.00099 * 269.72889 * 15 14 13 17 17 C 1.38239 * 119.99655 * 179.76882 * 16 15 14 18 18 C 1.38230 * 120.00228 * 0.50243 * 17 16 15 19 19 C 1.38238 * 119.99995 * 359.75228 * 18 17 16 20 20 C 1.38238 * 120.00072 * 359.97438 * 19 18 17 21 21 O 1.34733 * 107.67092 * 0.25786 * 12 11 10 22 22 H 0.96997 * 120.00359 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47115 * 60.00094 * 14 13 12 24 24 H 1.09001 * 109.46925 * 300.00251 * 14 13 12 25 25 H 1.08003 * 119.99927 * 359.97438 * 16 15 14 26 26 H 1.08000 * 119.99431 * 180.23215 * 17 16 15 27 27 H 1.07997 * 120.00220 * 179.73036 * 18 17 16 28 28 H 1.08002 * 119.99952 * 179.97438 * 19 18 17 29 29 H 1.07991 * 120.00062 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0953 1.6965 -1.2124 5 1 1.2766 2.7465 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0085 -1.2140 -0.0005 8 1 3.0885 -1.2139 -0.0010 9 6 1.3108 -2.4225 -0.0005 10 7 -0.0107 -2.5699 0.0005 11 7 -0.2958 -3.8248 0.0007 12 6 0.8227 -4.5308 0.0003 13 16 0.9427 -6.2887 -0.0003 14 6 -0.8143 -6.7236 -0.0010 15 6 -0.9605 -8.2235 -0.0009 16 6 -1.0327 -8.9110 -1.1980 17 6 -1.1620 -10.2873 -1.1979 18 6 -1.2296 -10.9751 -0.0008 19 6 -1.1627 -10.2871 1.1964 20 6 -1.0277 -8.9113 1.1963 21 8 1.8538 -3.6635 0.0057 22 1 -0.4850 0.8400 0.0004 23 1 -1.2902 -6.3118 -0.8910 24 1 -1.2908 -6.3124 0.8890 25 1 -0.9848 -8.3731 -2.1334 26 1 -1.2147 -10.8247 -2.1332 27 1 -1.3350 -12.0499 -0.0007 28 1 -1.2159 -10.8244 2.1317 29 1 -0.9759 -8.3738 2.1315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075321905.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = 20.777924 kcal Electronic energy + Delta-G solvation = -15827.836265 eV Core-core repulsion = 13035.461885 eV Total energy + Delta-G solvation = -2792.374380 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.70283 -40.11311 -36.26327 -35.92417 -33.84459 -31.84057 -31.79561 -28.70567 -27.74322 -23.98266 -23.75010 -23.47416 -22.28619 -19.99742 -18.73174 -17.58699 -17.50195 -17.41310 -16.36904 -16.22725 -16.00565 -15.73237 -15.26699 -14.34593 -14.03755 -13.89602 -13.65224 -13.50353 -13.26046 -13.09724 -12.68025 -12.18589 -12.12310 -12.01717 -12.00899 -11.92336 -11.65080 -10.92738 -10.66913 -9.82717 -9.66971 -8.86235 -8.85569 -7.00186 -0.22705 0.50488 0.55230 0.71783 1.24541 1.36612 1.48819 1.56352 2.07377 2.09915 2.88836 2.96813 2.97213 3.56961 3.78122 4.16412 4.23264 4.31783 4.52993 4.55876 4.66117 4.72570 4.81413 4.97454 5.05360 5.10438 5.16774 5.55476 5.61550 5.63787 5.89565 6.06782 6.09111 6.38212 8.08699 8.20478 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.072324 B = 0.003638 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.052935 B = 7695.702127 C = 7778.262591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.023 3.977 3 Si 1.028 2.972 4 H -0.249 1.249 5 H -0.259 1.259 6 H -0.249 1.249 7 C -0.436 4.436 8 H 0.115 0.885 9 C 0.260 3.740 10 N -0.397 5.397 11 N -0.290 5.290 12 C -0.013 4.013 13 S 0.038 5.962 14 C -0.054 4.054 15 C -0.091 4.091 16 C -0.112 4.112 17 C -0.123 4.123 18 C -0.112 4.112 19 C -0.123 4.123 20 C -0.112 4.112 21 O -0.270 6.270 22 H 0.299 0.701 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.128 0.872 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.149 0.851 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 -15.076 -0.014 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.200 4.200 3 Si 0.843 3.157 4 H -0.173 1.173 5 H -0.183 1.183 6 H -0.173 1.173 7 C -0.471 4.471 8 H 0.133 0.867 9 C 0.075 3.925 10 N -0.253 5.253 11 N -0.144 5.144 12 C -0.331 4.331 13 S 0.268 5.732 14 C -0.202 4.202 15 C -0.094 4.094 16 C -0.132 4.132 17 C -0.141 4.141 18 C -0.131 4.131 19 C -0.141 4.141 20 C -0.132 4.132 21 O -0.160 6.160 22 H 0.110 0.890 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.146 0.854 26 H 0.166 0.834 27 H 0.171 0.829 28 H 0.166 0.834 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.228 -15.286 -0.010 15.335 hybrid contribution 0.284 1.526 0.004 1.552 sum -0.944 -13.760 -0.006 13.792 Atomic orbital electron populations 1.70067 1.09611 1.31869 1.27051 1.27354 0.96054 1.05030 0.91542 0.84603 0.78089 0.72076 0.80920 1.17258 1.18312 1.17275 1.18876 0.96145 0.85974 1.46140 0.86690 1.24393 0.89122 0.84202 0.94777 1.75493 1.10879 1.05113 1.33782 1.74538 1.24907 1.00219 1.14705 1.29459 0.84563 1.00039 1.19031 1.84772 1.11042 0.83110 1.94286 1.22378 0.94225 0.96541 1.07031 1.19221 1.03536 0.91290 0.95324 1.21295 0.99140 0.95546 0.97238 1.21463 0.99498 0.93303 0.99802 1.21615 0.97988 1.01468 0.91992 1.21465 0.99491 0.93310 0.99803 1.21293 0.99142 0.95552 0.97239 1.84886 1.37144 1.16844 1.77149 0.88987 0.88942 0.88957 0.85429 0.83359 0.82947 0.83362 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.64 11.92 21.87 0.26 -41.38 15 2 C 0.02 1.17 5.50 85.32 0.47 1.64 15 3 Si 1.03 35.90 29.56 68.60 2.03 37.93 15 4 H -0.25 -8.22 7.11 99.48 0.71 -7.51 15 5 H -0.26 -8.43 7.11 99.48 0.71 -7.73 15 6 H -0.25 -8.22 7.11 99.48 0.71 -7.52 15 7 C -0.44 -24.17 9.43 23.06 0.22 -23.95 15 8 H 0.12 5.73 7.85 -2.91 -0.02 5.71 15 9 C 0.26 15.99 7.83 84.84 0.66 16.66 15 10 N -0.40 -25.35 10.49 -169.64 -1.78 -27.13 15 11 N -0.29 -16.92 11.66 -170.78 -1.99 -18.91 15 12 C -0.01 -0.68 8.54 130.18 1.11 0.43 15 13 S 0.04 1.49 22.29 -56.49 -1.26 0.23 15 14 C -0.05 -1.78 5.35 71.24 0.38 -1.40 15 15 C -0.09 -2.41 5.14 -19.86 -0.10 -2.51 15 16 C -0.11 -2.57 9.70 22.27 0.22 -2.35 15 17 C -0.12 -2.16 10.05 22.27 0.22 -1.93 15 18 C -0.11 -1.74 10.05 22.27 0.22 -1.52 15 19 C -0.12 -2.16 10.05 22.27 0.22 -1.93 15 20 C -0.11 -2.57 9.70 22.27 0.22 -2.35 15 21 O -0.27 -15.79 10.93 -18.66 -0.20 -16.00 15 22 H 0.30 14.33 8.29 -92.71 -0.77 13.56 15 23 H 0.09 3.20 8.08 -2.39 -0.02 3.18 15 24 H 0.09 3.19 8.08 -2.39 -0.02 3.17 15 25 H 0.13 2.79 8.06 -2.91 -0.02 2.76 15 26 H 0.15 1.80 8.06 -2.91 -0.02 1.78 15 27 H 0.15 1.41 8.06 -2.91 -0.02 1.38 15 28 H 0.15 1.80 8.06 -2.91 -0.02 1.78 15 29 H 0.13 2.79 8.06 -2.92 -0.02 2.76 15 Total: -1.00 -73.22 282.10 2.07 -71.15 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.17 Total: 13.33 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 3.85 Total: -19.22 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -3.51 Total: -87.42 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.20 Total: -16.00 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -1.26 Total: 0.23 kcal Total: -73.22 2.07 -71.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321905.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.924 kcal (2) G-P(sol) polarization free energy of solvation -73.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds